Wall clock time and date at job start Tue Mar 31 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99788 * 2 1 4 4 C 1.52998 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47113 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46835 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99671 * 180.02562 * 6 5 4 8 8 O 1.21652 * 120.00228 * 0.02562 * 7 6 5 9 9 C 1.47116 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.43204 * 119.99775 * 359.97438 * 9 7 6 11 11 N 7.61026 * 171.36404 * 359.97438 * 2 1 3 12 12 C 1.37858 * 120.00335 * 180.02562 * 9 7 6 13 13 C 1.46382 * 119.99994 * 187.29722 * 12 9 7 14 14 C 1.40287 * 120.10460 * 34.37817 * 13 12 9 15 15 C 1.36538 * 120.10381 * 180.02562 * 14 13 12 16 16 C 1.39139 * 120.31232 * 359.97438 * 15 14 13 17 17 O 1.35543 * 119.89892 * 179.97438 * 16 15 14 18 18 C 1.34721 * 117.00200 * 352.77575 * 17 16 15 19 19 H 1.08004 * 119.99930 * 5.15401 * 18 17 16 20 20 C 1.38762 * 120.00177 * 185.15833 * 18 17 16 21 21 N 1.31477 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47126 * 60.00108 * 22 20 18 24 24 H 1.48504 * 109.46870 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47070 * 299.99883 * 22 20 18 26 26 C 1.39742 * 120.19962 * 359.97438 * 16 15 14 27 27 O 1.35950 * 120.05390 * 180.02562 * 26 16 15 28 28 C 1.42893 * 117.00129 * 180.02562 * 27 26 16 29 29 C 1.37987 * 119.89235 * 0.27710 * 26 16 15 30 30 H 1.08998 * 109.47305 * 60.00213 * 1 2 3 31 31 H 1.09008 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47421 * 299.99929 * 1 2 3 33 33 H 1.08997 * 109.47625 * 59.99589 * 3 2 1 34 34 H 1.09004 * 109.46751 * 300.00188 * 3 2 1 35 35 H 1.09001 * 109.46937 * 60.00111 * 4 3 2 36 36 H 1.08995 * 109.47021 * 299.99953 * 4 3 2 37 37 H 1.09001 * 109.46684 * 60.00500 * 5 4 3 38 38 H 1.08997 * 109.47075 * 300.00202 * 5 4 3 39 39 H 0.96992 * 120.00084 * 0.02562 * 6 5 4 40 40 H 1.08000 * 119.99995 * 7.29042 * 12 9 7 41 41 H 1.07996 * 119.94593 * 0.02562 * 14 13 12 42 42 H 1.07997 * 119.84366 * 179.97438 * 15 14 13 43 43 H 0.97001 * 120.00198 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.47205 * 180.02562 * 28 27 26 45 45 H 1.09000 * 109.47067 * 60.00003 * 28 27 26 46 46 H 1.08998 * 109.47009 * 300.00171 * 28 27 26 47 47 H 1.08002 * 120.15564 * 179.71922 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6181 2.4668 0.0012 7 6 6.3820 3.5772 0.0015 8 8 5.8588 4.6755 0.0011 9 6 7.8485 3.4611 0.0033 10 6 8.4644 2.1683 0.0053 11 7 8.9530 1.1427 -0.0005 12 6 8.6299 4.5969 0.0040 13 6 10.0809 4.4871 -0.1552 14 6 10.6252 3.4873 -0.9751 15 6 11.9786 3.3846 -1.1232 16 6 12.8264 4.2692 -0.4639 17 8 14.1687 4.1593 -0.6164 18 6 14.6214 3.0872 -1.2951 19 1 13.9223 2.4079 -1.7603 20 6 15.9858 2.8555 -1.3964 21 7 16.8368 3.6826 -0.8304 22 14 16.6134 1.3685 -2.3368 23 1 16.1571 1.4464 -3.7477 24 1 18.0978 1.3477 -2.2965 25 1 16.0844 0.1289 -1.7131 26 6 12.2980 5.2706 0.3552 27 8 13.1291 6.1337 0.9976 28 6 12.5192 7.1317 1.8187 29 6 10.9317 5.3788 0.5149 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8465 0.8899 34 1 1.6884 1.8464 -0.8900 35 1 3.8573 0.6437 -0.8891 36 1 3.8566 0.6440 0.8908 37 1 3.8357 3.1239 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0352 1.5912 0.0019 40 1 8.1716 5.5676 0.1220 41 1 9.9726 2.7978 -1.4900 42 1 12.3931 2.6131 -1.7551 43 1 17.7906 3.5205 -0.9009 44 1 13.2927 7.7523 2.2713 45 1 11.9346 6.6499 2.6024 46 1 11.8652 7.7544 1.2083 47 1 10.5190 6.1483 1.1505 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006429028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:58 Heat of formation + Delta-G solvation = -72.510085 kcal Electronic energy + Delta-G solvation = -30162.242650 eV Core-core repulsion = 25698.473700 eV Total energy + Delta-G solvation = -4463.768950 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.06383 -39.70600 -38.41489 -37.83457 -37.26456 -35.94806 -35.59119 -33.19382 -32.53896 -32.13839 -29.89655 -29.11021 -27.55188 -26.76344 -25.87091 -25.27023 -23.71603 -22.16259 -21.90126 -21.15674 -20.87281 -18.64748 -18.36977 -17.48189 -17.02672 -16.76633 -16.59018 -15.94788 -15.54500 -15.51635 -15.31905 -15.18290 -15.03485 -14.80830 -14.36639 -14.26631 -14.13260 -13.77546 -13.71121 -13.52325 -13.16209 -12.80535 -12.73547 -12.57538 -12.36921 -12.28176 -12.19371 -11.92104 -11.76373 -11.57472 -11.54441 -11.51027 -11.24750 -11.12322 -10.83853 -10.73866 -10.61187 -10.13364 -10.07724 -9.74647 -9.46134 -9.26522 -8.95900 -8.14074 -7.09078 -6.77671 -4.24697 0.50511 2.03185 2.18901 2.75118 2.78394 2.96691 2.98907 3.01700 3.03519 3.45380 3.72677 3.76270 3.84393 4.16437 4.27828 4.48635 4.55377 4.64867 4.74262 4.84511 4.88256 4.88633 4.91761 5.00627 5.08738 5.21143 5.23718 5.30780 5.35305 5.43732 5.47914 5.49729 5.66200 5.69509 5.75571 5.79874 5.92054 6.08912 6.17627 6.22380 6.34786 6.66111 6.68181 6.80144 6.94093 7.08436 7.31017 7.33532 7.63254 7.71852 7.96975 8.11315 8.64543 9.31131 10.36737 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.001796 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.641499 B =15586.918519 C =17426.911489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.125 3.875 6 N -0.732 5.732 7 C 0.585 3.415 8 O -0.544 6.544 9 C -0.200 4.200 10 C 0.259 3.741 11 N -0.430 5.430 12 C 0.121 3.879 13 C -0.201 4.201 14 C -0.042 4.042 15 C -0.224 4.224 16 C 0.154 3.846 17 O -0.135 6.135 18 C -0.387 4.387 19 H 0.101 0.899 20 C 0.044 3.956 21 N -0.834 5.834 22 Si 0.947 3.053 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.265 1.265 26 C 0.051 3.949 27 O -0.303 6.303 28 C 0.029 3.971 29 C -0.124 4.124 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.149 0.851 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.278 0.722 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.371 -0.133 2.197 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.001 3.999 6 N -0.384 5.384 7 C 0.374 3.626 8 O -0.423 6.423 9 C -0.207 4.207 10 C -0.054 4.054 11 N -0.108 5.108 12 C 0.097 3.903 13 C -0.203 4.203 14 C -0.061 4.061 15 C -0.244 4.244 16 C 0.095 3.905 17 O -0.034 6.034 18 C -0.462 4.462 19 H 0.118 0.882 20 C -0.165 4.165 21 N -0.465 5.465 22 Si 0.770 3.230 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.190 1.190 26 C 0.006 3.994 27 O -0.217 6.217 28 C -0.066 4.066 29 C -0.144 4.144 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.236 0.764 40 H 0.167 0.833 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.180 -0.932 2.284 22.316 hybrid contribution -0.151 -0.455 -0.379 0.611 sum -22.331 -1.387 1.905 22.455 Atomic orbital electron populations 1.22755 0.80724 1.02897 1.00104 1.87870 1.19950 1.27891 1.95472 1.22375 0.93201 0.84852 1.00774 1.21703 0.93962 0.97135 1.04404 1.21150 0.79553 0.96274 1.02887 1.45800 1.06688 1.09256 1.76634 1.17559 0.85578 0.83952 0.75534 1.90799 1.74141 1.26074 1.51264 1.17794 0.91678 0.87163 1.24082 1.25456 0.93728 0.92738 0.93468 1.81286 1.06990 1.11897 1.10593 1.22999 0.91737 0.96928 0.78621 1.18122 0.91012 1.02515 1.08661 1.20786 0.94702 0.94335 0.96243 1.20538 0.92832 1.03931 1.07068 1.18950 0.85244 0.92934 0.93375 1.83932 1.15499 1.41754 1.62202 1.21617 0.92029 1.01702 1.30813 0.88210 1.25490 0.94636 0.99215 0.97172 1.70013 1.03407 1.34946 1.38096 0.85675 0.78257 0.79520 0.79550 1.19003 1.19854 1.18991 1.17976 0.88604 0.94243 0.98533 1.86237 1.33387 1.41983 1.60080 1.22939 0.99468 0.90511 0.93723 1.20822 0.90931 1.00364 1.02295 0.93939 0.89535 0.93954 0.92806 0.92790 0.90230 0.90231 0.91017 0.91002 0.76433 0.83314 0.86921 0.84468 0.91168 0.88891 0.93361 0.93284 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.32 10.70 -35.23 -0.38 -3.69 16 3 C 0.07 0.43 5.94 37.16 0.22 0.65 16 4 C -0.13 -0.94 5.70 -26.73 -0.15 -1.09 16 5 C 0.13 1.02 5.67 -4.04 -0.02 1.00 16 6 N -0.73 -7.49 5.51 -61.48 -0.34 -7.83 16 7 C 0.58 7.45 7.75 -12.66 -0.10 7.35 16 8 O -0.54 -8.08 16.31 5.23 0.09 -8.00 16 9 C -0.20 -2.66 5.82 -104.51 -0.61 -3.27 16 10 C 0.26 3.86 10.60 -22.47 -0.24 3.62 16 11 N -0.43 -7.22 18.21 41.84 0.76 -6.46 16 12 C 0.12 1.61 9.43 -36.45 -0.34 1.26 16 13 C -0.20 -3.28 5.50 -105.08 -0.58 -3.86 16 14 C -0.04 -0.76 8.23 -39.43 -0.32 -1.08 16 15 C -0.22 -4.69 9.09 -39.86 -0.36 -5.05 16 16 C 0.15 3.58 6.67 -38.68 -0.26 3.32 16 17 O -0.14 -3.70 9.52 -13.54 -0.13 -3.82 16 18 C -0.39 -10.21 9.48 30.93 0.29 -9.91 16 19 H 0.10 2.41 5.19 -52.48 -0.27 2.14 16 20 C 0.04 1.12 5.50 -17.51 -0.10 1.03 16 21 N -0.83 -23.03 13.67 55.48 0.76 -22.27 16 22 Si 0.95 19.29 29.55 -169.99 -5.02 14.27 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 C 0.05 1.05 6.70 -39.11 -0.26 0.79 16 27 O -0.30 -6.14 10.28 -34.11 -0.35 -6.49 16 28 C 0.03 0.40 9.81 101.05 0.99 1.39 16 29 C -0.12 -2.07 8.79 -38.90 -0.34 -2.41 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 3.82 7.35 -40.82 -0.30 3.52 16 40 H 0.15 1.67 7.61 -52.49 -0.40 1.27 16 41 H 0.11 1.91 5.97 -52.49 -0.31 1.60 16 42 H 0.14 2.86 5.63 -52.49 -0.30 2.56 16 43 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 46 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 47 H 0.13 1.68 6.29 -52.49 -0.33 1.35 16 LS Contribution 409.86 15.07 6.18 6.18 Total: -1.00 -32.28 409.86 -5.57 -37.86 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.07 Total: 5.24 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.07 Total: -4.97 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 1.18 Total: -36.56 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.77 Total: -22.01 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.28 -5.57 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006429028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.654 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds