Wall clock time and date at job start Tue Mar 31 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99788 * 2 1 4 4 C 1.52998 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47113 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46835 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99671 * 180.02562 * 6 5 4 8 8 O 1.21652 * 120.00228 * 0.02562 * 7 6 5 9 9 C 1.47116 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.43204 * 119.99775 * 359.97438 * 9 7 6 11 11 N 7.61026 * 171.36404 * 359.97438 * 2 1 3 12 12 C 1.37858 * 120.00335 * 180.02562 * 9 7 6 13 13 C 1.46382 * 119.99994 * 187.29722 * 12 9 7 14 14 C 1.40287 * 120.10460 * 34.37817 * 13 12 9 15 15 C 1.36538 * 120.10381 * 180.02562 * 14 13 12 16 16 C 1.39139 * 120.31232 * 359.97438 * 15 14 13 17 17 O 1.35543 * 119.89892 * 179.97438 * 16 15 14 18 18 C 1.34721 * 117.00200 * 352.77575 * 17 16 15 19 19 H 1.08004 * 119.99930 * 5.15401 * 18 17 16 20 20 C 1.38762 * 120.00177 * 185.15833 * 18 17 16 21 21 N 1.31477 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47126 * 60.00108 * 22 20 18 24 24 H 1.48504 * 109.46870 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47070 * 299.99883 * 22 20 18 26 26 C 1.39742 * 120.19962 * 359.97438 * 16 15 14 27 27 O 1.35950 * 120.05390 * 180.02562 * 26 16 15 28 28 C 1.42893 * 117.00129 * 180.02562 * 27 26 16 29 29 C 1.37987 * 119.89235 * 0.27710 * 26 16 15 30 30 H 1.08998 * 109.47305 * 60.00213 * 1 2 3 31 31 H 1.09008 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47421 * 299.99929 * 1 2 3 33 33 H 1.08997 * 109.47625 * 59.99589 * 3 2 1 34 34 H 1.09004 * 109.46751 * 300.00188 * 3 2 1 35 35 H 1.09001 * 109.46937 * 60.00111 * 4 3 2 36 36 H 1.08995 * 109.47021 * 299.99953 * 4 3 2 37 37 H 1.09001 * 109.46684 * 60.00500 * 5 4 3 38 38 H 1.08997 * 109.47075 * 300.00202 * 5 4 3 39 39 H 0.96992 * 120.00084 * 0.02562 * 6 5 4 40 40 H 1.08000 * 119.99995 * 7.29042 * 12 9 7 41 41 H 1.07996 * 119.94593 * 0.02562 * 14 13 12 42 42 H 1.07997 * 119.84366 * 179.97438 * 15 14 13 43 43 H 0.97001 * 120.00198 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.47205 * 180.02562 * 28 27 26 45 45 H 1.09000 * 109.47067 * 60.00003 * 28 27 26 46 46 H 1.08998 * 109.47009 * 300.00171 * 28 27 26 47 47 H 1.08002 * 120.15564 * 179.71922 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6181 2.4668 0.0012 7 6 6.3820 3.5772 0.0015 8 8 5.8588 4.6755 0.0011 9 6 7.8485 3.4611 0.0033 10 6 8.4644 2.1683 0.0053 11 7 8.9530 1.1427 -0.0005 12 6 8.6299 4.5969 0.0040 13 6 10.0809 4.4871 -0.1552 14 6 10.6252 3.4873 -0.9751 15 6 11.9786 3.3846 -1.1232 16 6 12.8264 4.2692 -0.4639 17 8 14.1687 4.1593 -0.6164 18 6 14.6214 3.0872 -1.2951 19 1 13.9223 2.4079 -1.7603 20 6 15.9858 2.8555 -1.3964 21 7 16.8368 3.6826 -0.8304 22 14 16.6134 1.3685 -2.3368 23 1 16.1571 1.4464 -3.7477 24 1 18.0978 1.3477 -2.2965 25 1 16.0844 0.1289 -1.7131 26 6 12.2980 5.2706 0.3552 27 8 13.1291 6.1337 0.9976 28 6 12.5192 7.1317 1.8187 29 6 10.9317 5.3788 0.5149 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8465 0.8899 34 1 1.6884 1.8464 -0.8900 35 1 3.8573 0.6437 -0.8891 36 1 3.8566 0.6440 0.8908 37 1 3.8357 3.1239 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0352 1.5912 0.0019 40 1 8.1716 5.5676 0.1220 41 1 9.9726 2.7978 -1.4900 42 1 12.3931 2.6131 -1.7551 43 1 17.7906 3.5205 -0.9009 44 1 13.2927 7.7523 2.2713 45 1 11.9346 6.6499 2.6024 46 1 11.8652 7.7544 1.2083 47 1 10.5190 6.1483 1.1505 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006429028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:57 Heat of formation + Delta-G solvation = -95.106930 kcal Electronic energy + Delta-G solvation = -30163.222523 eV Core-core repulsion = 25698.473700 eV Total energy + Delta-G solvation = -4464.748823 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.49114 -40.87739 -39.39432 -38.98084 -38.62061 -37.33500 -36.46153 -34.69596 -34.09069 -32.95086 -31.41037 -30.47923 -28.30817 -27.78550 -27.47694 -26.16051 -24.91301 -23.43581 -22.76013 -22.28535 -22.25993 -20.05370 -19.87045 -18.88913 -18.18049 -17.54401 -17.31138 -17.10020 -16.76918 -16.68923 -16.48969 -16.31062 -16.22549 -15.76454 -15.70245 -15.48031 -15.36994 -15.13731 -15.06526 -14.80045 -14.38717 -14.12224 -14.03249 -13.71695 -13.43554 -13.36582 -13.21723 -12.96171 -12.91327 -12.76472 -12.74872 -12.65525 -12.23944 -12.08553 -12.06775 -12.03615 -12.02036 -11.46409 -11.19464 -10.97742 -10.61700 -10.56601 -10.14012 -9.59258 -8.69372 -8.56025 -6.19322 -0.73622 0.46830 0.73548 1.32187 1.42788 1.48181 1.61007 1.61976 2.02809 2.11031 2.49130 2.52040 2.74709 2.85466 2.94818 3.02606 3.26643 3.52641 3.88724 3.95651 3.96986 4.03694 4.14330 4.19227 4.29759 4.42060 4.47846 4.49687 4.50321 4.51599 4.52249 4.59287 4.67176 4.72463 4.75028 4.79373 4.87769 4.92976 5.03326 5.09416 5.10143 5.24120 5.33031 5.35692 5.51180 5.78684 5.87366 6.22577 6.37071 6.45814 6.57762 6.86471 7.09100 7.62855 8.64648 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.001796 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.641499 B =15586.918519 C =17426.911489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.063 3.937 4 C -0.127 4.127 5 C 0.126 3.874 6 N -0.723 5.723 7 C 0.588 3.412 8 O -0.557 6.557 9 C -0.169 4.169 10 C 0.268 3.732 11 N -0.455 5.455 12 C 0.127 3.873 13 C -0.165 4.165 14 C -0.058 4.058 15 C -0.223 4.223 16 C 0.114 3.886 17 O -0.201 6.201 18 C -0.420 4.420 19 H 0.104 0.896 20 C -0.014 4.014 21 N -0.904 5.904 22 Si 1.017 2.983 23 H -0.255 1.255 24 H -0.267 1.267 25 H -0.260 1.260 26 C 0.041 3.959 27 O -0.343 6.343 28 C 0.016 3.984 29 C -0.109 4.109 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.406 0.594 40 H 0.189 0.811 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.277 0.723 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.723 0.463 2.878 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.014 4.014 4 C -0.164 4.164 5 C 0.003 3.997 6 N -0.374 5.374 7 C 0.376 3.624 8 O -0.437 6.437 9 C -0.176 4.176 10 C -0.045 4.045 11 N -0.133 5.133 12 C 0.104 3.896 13 C -0.166 4.166 14 C -0.077 4.077 15 C -0.243 4.243 16 C 0.060 3.940 17 O -0.105 6.105 18 C -0.495 4.495 19 H 0.121 0.879 20 C -0.214 4.214 21 N -0.539 5.539 22 Si 0.835 3.165 23 H -0.179 1.179 24 H -0.192 1.192 25 H -0.184 1.184 26 C -0.004 4.004 27 O -0.258 6.258 28 C -0.078 4.078 29 C -0.127 4.127 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.241 0.759 40 H 0.206 0.794 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -27.652 -0.347 2.975 27.814 hybrid contribution 0.599 -0.532 -0.385 0.889 sum -27.053 -0.879 2.590 27.191 Atomic orbital electron populations 1.22918 0.79373 1.03729 1.01016 1.87823 1.21573 1.28943 1.95677 1.22443 0.92696 0.84511 1.01782 1.21609 0.94420 0.96289 1.04122 1.21269 0.78030 0.97057 1.03375 1.45836 1.07684 1.08844 1.75014 1.17352 0.85058 0.84270 0.75754 1.90818 1.74138 1.26700 1.52081 1.18041 0.92478 0.86242 1.20878 1.25718 0.93108 0.92850 0.92835 1.81341 1.07895 1.13031 1.11008 1.23191 0.89497 0.98647 0.78264 1.18540 0.92906 0.99928 1.05259 1.20940 0.93564 0.95726 0.97451 1.20632 0.94019 1.03218 1.06382 1.19649 0.84917 0.94645 0.94740 1.83932 1.17167 1.43380 1.66022 1.21904 0.92700 1.02728 1.32161 0.87872 1.26618 0.94525 1.02117 0.98126 1.70147 1.03407 1.37975 1.42391 0.84682 0.77745 0.75648 0.78396 1.17881 1.19173 1.18434 1.18304 0.90071 0.93857 0.98177 1.86208 1.35409 1.43194 1.60955 1.23355 1.00762 0.89750 0.93896 1.21322 0.89124 1.00727 1.01574 0.93036 0.88888 0.93006 0.91764 0.91825 0.90566 0.90488 0.90427 0.90545 0.75934 0.79404 0.85580 0.85603 0.91404 0.87419 0.91254 0.90759 0.80543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.23 10.70 -148.98 -1.59 -7.82 16 3 C 0.06 0.66 5.94 71.98 0.43 1.08 16 4 C -0.13 -1.40 5.70 30.60 0.17 -1.23 16 5 C 0.13 1.58 5.67 86.38 0.49 2.07 16 6 N -0.72 -11.86 5.51 -466.65 -2.57 -14.43 16 7 C 0.59 12.09 7.75 86.57 0.67 12.76 16 8 O -0.56 -13.61 16.31 -4.20 -0.07 -13.68 16 9 C -0.17 -3.67 5.82 -19.79 -0.12 -3.78 16 10 C 0.27 7.05 10.60 88.33 0.94 7.98 16 11 N -0.46 -14.23 18.21 19.00 0.35 -13.88 16 12 C 0.13 2.64 9.43 24.30 0.23 2.87 16 13 C -0.17 -4.73 5.50 -20.16 -0.11 -4.84 16 14 C -0.06 -2.01 8.23 22.37 0.18 -1.83 16 15 C -0.22 -9.65 9.09 22.09 0.20 -9.45 16 16 C 0.11 5.60 6.67 22.85 0.15 5.75 16 17 O -0.20 -12.02 9.52 -5.47 -0.05 -12.07 16 18 C -0.42 -24.21 9.48 67.95 0.64 -23.57 16 19 H 0.10 5.47 5.19 -2.91 -0.02 5.46 16 20 C -0.01 -0.77 5.50 84.87 0.47 -0.31 16 21 N -0.90 -54.64 13.67 21.63 0.30 -54.34 16 22 Si 1.02 42.41 29.55 68.60 2.03 44.43 16 23 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 C 0.04 1.68 6.70 22.57 0.15 1.83 16 27 O -0.34 -14.05 10.28 -79.10 -0.81 -14.87 16 28 C 0.02 0.41 9.81 113.37 1.11 1.52 16 29 C -0.11 -3.22 8.79 22.71 0.20 -3.02 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.41 6.24 7.35 -92.71 -0.68 5.56 16 40 H 0.19 2.76 7.61 -2.91 -0.02 2.74 16 41 H 0.13 4.01 5.97 -2.91 -0.02 3.99 16 42 H 0.13 5.61 5.63 -2.91 -0.02 5.60 16 43 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.07 1.41 7.65 -2.39 -0.02 1.39 16 46 H 0.07 1.45 7.67 -2.39 -0.02 1.43 16 47 H 0.18 3.52 6.29 -2.91 -0.02 3.50 16 Total: -1.00 -78.76 409.86 4.98 -73.78 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.35 Total: 23.57 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 7.06 Total: -10.68 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.93 Total: -82.66 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -2.53 Total: -48.44 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -78.76 4.98 -73.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006429028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.332 kcal (2) G-P(sol) polarization free energy of solvation -78.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds