Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99968 * 2 1 4 4 C 1.38081 * 119.99826 * 0.23692 * 3 2 1 5 5 C 1.39977 * 119.83250 * 180.20911 * 4 3 2 6 6 C 1.46972 * 120.07615 * 179.80711 * 5 4 3 7 7 C 1.35018 * 120.00057 * 179.72154 * 6 5 4 8 8 C 1.46260 * 120.00164 * 180.02562 * 7 6 5 9 9 O 1.21722 * 119.99515 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99759 * 179.72391 * 8 7 6 11 11 C 1.46503 * 119.99420 * 180.27941 * 10 8 7 12 12 C 1.53003 * 109.47033 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46989 * 294.99589 * 12 11 10 14 14 C 1.52995 * 109.47436 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47044 * 59.99849 * 14 13 12 16 16 C 1.52998 * 109.47469 * 300.00181 * 15 14 13 17 17 C 1.52996 * 109.47336 * 174.99939 * 12 11 10 18 18 C 1.40027 * 119.84794 * 359.53754 * 5 4 3 19 19 C 1.37651 * 119.99498 * 0.24669 * 18 5 4 20 20 C 1.39052 * 120.16446 * 359.97438 * 19 18 5 21 21 O 1.35614 * 119.92124 * 180.02562 * 20 19 18 22 22 C 1.34754 * 117.00176 * 354.37018 * 21 20 19 23 23 H 1.08002 * 119.99841 * 5.07308 * 22 21 20 24 24 C 1.38704 * 120.00315 * 185.06486 * 22 21 20 25 25 N 1.31520 * 119.99874 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99857 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47215 * 89.99933 * 26 24 22 28 28 H 1.48503 * 109.46789 * 209.99747 * 26 24 22 29 29 H 1.48499 * 109.47135 * 329.99350 * 26 24 22 30 30 H 1.08994 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47138 * 300.00216 * 1 2 3 32 32 H 1.09004 * 109.47256 * 59.99637 * 1 2 3 33 33 H 1.07996 * 120.08462 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99880 * 359.72845 * 6 5 4 35 35 H 1.08001 * 120.00068 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00487 * 0.27927 * 10 8 7 37 37 H 1.09001 * 109.47116 * 299.99452 * 11 10 8 38 38 H 1.08999 * 109.47665 * 59.99992 * 11 10 8 39 39 H 1.09000 * 109.47441 * 54.99586 * 12 11 10 40 40 H 1.08993 * 109.47431 * 300.00191 * 13 12 11 41 41 H 1.09011 * 109.47068 * 60.00103 * 13 12 11 42 42 H 1.09000 * 109.47271 * 300.00166 * 14 13 12 43 43 H 1.09001 * 109.47622 * 180.02562 * 14 13 12 44 44 H 1.09003 * 109.47330 * 179.97438 * 15 14 13 45 45 H 1.09008 * 109.47112 * 60.00590 * 15 14 13 46 46 H 1.09001 * 109.46953 * 300.00322 * 16 15 14 47 47 H 1.08998 * 109.47362 * 179.97438 * 16 15 14 48 48 H 1.09010 * 109.47265 * 299.99579 * 17 12 11 49 49 H 1.09001 * 109.47612 * 59.99712 * 17 12 11 50 50 H 1.07996 * 120.00142 * 180.23149 * 18 5 4 51 51 H 1.08001 * 119.91311 * 180.02562 * 19 18 5 52 52 H 0.97008 * 120.00009 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2942 2.3694 0.0049 5 6 1.9332 3.6148 0.0005 6 6 1.1380 4.8507 0.0014 7 6 1.7560 6.0512 0.0028 8 6 0.9646 7.2812 0.0043 9 8 -0.2512 7.2225 0.0048 10 7 1.5815 8.4794 0.0113 11 6 0.7887 9.7113 0.0190 12 6 1.7258 10.9208 0.0254 13 6 2.5209 10.9431 1.3323 14 6 3.4585 12.1521 1.3385 15 6 2.6353 13.4363 1.2204 16 6 1.8402 13.4142 -0.0866 17 6 0.9022 12.2048 -0.0923 18 6 3.3320 3.6803 0.0009 19 6 4.0752 2.5217 0.0004 20 6 3.4405 1.2845 0.0002 21 8 4.1776 0.1461 0.0003 22 6 5.5131 0.2820 -0.1171 23 1 5.9572 1.2664 -0.1233 24 6 6.3174 -0.8424 -0.2298 25 7 7.6209 -0.7098 -0.3439 26 14 5.5491 -2.5451 -0.2196 27 1 5.2186 -2.9474 -1.6102 28 1 6.5088 -3.5176 0.3622 29 1 4.3094 -2.5238 0.5976 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.2156 2.3144 0.0084 34 1 0.0592 4.7987 0.0011 35 1 2.8347 6.1032 0.0028 36 1 2.5504 8.5261 0.0113 37 1 0.1598 9.7442 -0.8706 38 1 0.1603 9.7336 0.9094 39 1 2.4138 10.8519 -0.8173 40 1 1.8331 11.0120 2.1750 41 1 3.1078 10.0282 1.4162 42 1 4.1464 12.0827 0.4958 43 1 4.0253 12.1677 2.2694 44 1 3.3032 14.2978 1.2252 45 1 1.9474 13.5058 2.0631 46 1 2.5282 13.3447 -0.9292 47 1 1.2535 14.3289 -0.1705 48 1 0.3357 12.1890 -1.0235 49 1 0.2143 12.2738 0.7503 50 1 3.8276 4.6399 0.0012 51 1 5.1539 2.5738 0.0011 52 1 8.1834 -1.4962 -0.4224 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006640573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = -85.455828 kcal Electronic energy + Delta-G solvation = -30504.942941 eV Core-core repulsion = 26241.871626 eV Total energy + Delta-G solvation = -4263.071314 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.99271 -39.78660 -38.74394 -37.86646 -36.71528 -34.93630 -33.08938 -32.43639 -31.58645 -31.09397 -29.85554 -28.91570 -26.91013 -26.17037 -25.29802 -23.37627 -22.94312 -21.91670 -21.54228 -20.84906 -20.17379 -19.27396 -18.14345 -17.93045 -17.14155 -16.43710 -15.82332 -15.79624 -15.54000 -15.36907 -15.25229 -14.66335 -14.53497 -14.48773 -14.33517 -14.05666 -13.96507 -13.81334 -13.67822 -13.27043 -12.98672 -12.60527 -12.54023 -12.48424 -12.32692 -12.12713 -11.94457 -11.92631 -11.60367 -11.53399 -11.40032 -11.10901 -10.99456 -10.89549 -10.86696 -10.74562 -10.56544 -10.45023 -10.30612 -9.83335 -9.60466 -9.48355 -9.12790 -8.88312 -8.09366 -7.06214 -6.58928 -4.18774 0.93859 1.99521 2.44761 3.16485 3.20963 3.21119 3.38378 3.52557 3.77844 4.14740 4.21044 4.29883 4.33155 4.37258 4.56516 4.72801 4.82363 4.84307 4.94860 4.96520 5.04769 5.08777 5.11179 5.15514 5.22383 5.30630 5.37406 5.41751 5.43066 5.47404 5.51381 5.58482 5.63751 5.65334 5.70354 5.73574 5.75893 5.78267 5.86344 5.87814 5.92492 6.05988 6.06946 6.31569 6.34742 6.40089 6.51315 6.75997 6.90258 7.14696 7.31117 7.49033 7.52337 7.77951 7.97649 8.31124 8.74767 9.36671 10.46780 Molecular weight = 359.19amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.001644 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.553876 B =17026.315403 C =18718.101024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.137 4.137 5 C -0.155 4.155 6 C 0.030 3.970 7 C -0.271 4.271 8 C 0.554 3.446 9 O -0.559 6.559 10 N -0.732 5.732 11 C 0.125 3.875 12 C -0.099 4.099 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.063 4.063 19 C -0.210 4.210 20 C 0.155 3.845 21 O -0.189 6.189 22 C -0.388 4.388 23 H 0.111 0.889 24 C 0.067 3.933 25 N -0.866 5.866 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.281 1.281 29 H -0.254 1.254 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.400 0.600 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.119 0.881 51 H 0.144 0.856 52 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 22.214 1.390 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.156 4.156 6 C 0.010 3.990 7 C -0.292 4.292 8 C 0.345 3.655 9 O -0.440 6.440 10 N -0.383 5.383 11 C 0.001 3.999 12 C -0.118 4.118 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.082 4.082 19 C -0.229 4.229 20 C 0.100 3.900 21 O -0.092 6.092 22 C -0.463 4.463 23 H 0.128 0.872 24 C -0.139 4.139 25 N -0.501 5.501 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.178 1.178 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.234 0.766 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.137 0.863 51 H 0.161 0.839 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.280 21.613 1.389 24.419 hybrid contribution 0.258 -0.432 -0.035 0.505 sum -11.022 21.181 1.354 23.916 Atomic orbital electron populations 1.22937 0.79877 1.03143 1.00676 1.86177 1.19879 1.26381 1.89885 1.18038 0.89253 0.84635 1.07397 1.20898 0.98723 0.90853 1.05108 1.18251 0.92839 0.91495 1.13060 1.22234 0.99189 0.90916 0.86673 1.22532 0.99932 0.91745 1.14954 1.18396 0.87644 0.83962 0.75453 1.90775 1.14271 1.87784 1.51144 1.45875 1.10234 1.05552 1.76687 1.21342 0.93722 0.82627 1.02187 1.21417 0.97375 0.94098 0.98890 1.21615 0.98330 0.98230 0.97176 1.21537 0.97823 0.94507 1.01917 1.21550 0.98819 0.97619 0.97860 1.21528 0.98329 0.97824 0.97930 1.21511 0.97739 0.93448 1.02285 1.20985 0.92427 0.97586 0.97178 1.20976 1.01246 0.90529 1.10147 1.18618 0.87708 0.87044 0.96632 1.83586 1.20442 1.27519 1.77645 1.20902 0.77169 0.97193 1.51016 0.87188 1.24518 0.94539 0.99743 0.95061 1.69625 1.03155 1.32046 1.45297 0.86164 0.79886 0.81369 0.79610 1.19637 1.20618 1.17768 0.88937 0.93258 0.93242 0.85650 0.85864 0.85685 0.76554 0.91692 0.91670 0.90463 0.91703 0.91745 0.91932 0.91933 0.92152 0.92021 0.91936 0.91963 0.91660 0.91618 0.86326 0.83874 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -6.04 10.28 -34.22 -0.35 -6.39 16 3 C 0.05 1.04 6.70 -39.12 -0.26 0.78 16 4 C -0.14 -2.32 8.77 -38.99 -0.34 -2.66 16 5 C -0.16 -2.56 5.87 -105.04 -0.62 -3.18 16 6 C 0.03 0.44 9.45 -37.19 -0.35 0.08 16 7 C -0.27 -3.59 9.41 -37.50 -0.35 -3.94 16 8 C 0.55 7.58 7.74 -13.04 -0.10 7.48 16 9 O -0.56 -9.62 16.23 5.17 0.08 -9.54 16 10 N -0.73 -7.34 5.28 -61.75 -0.33 -7.66 16 11 C 0.13 1.12 5.06 -4.04 -0.02 1.10 16 12 C -0.10 -0.64 2.22 -90.62 -0.20 -0.84 16 13 C -0.12 -0.73 5.08 -26.73 -0.14 -0.87 16 14 C -0.12 -0.69 5.92 -26.74 -0.16 -0.84 16 15 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 16 C -0.12 -0.63 5.93 -26.70 -0.16 -0.78 16 17 C -0.11 -0.65 5.21 -26.71 -0.14 -0.79 16 18 C -0.06 -1.08 9.40 -39.13 -0.37 -1.45 16 19 C -0.21 -4.25 9.14 -39.49 -0.36 -4.61 16 20 C 0.15 3.51 6.67 -38.77 -0.26 3.25 16 21 O -0.19 -4.91 8.35 -13.93 -0.12 -5.03 16 22 C -0.39 -10.49 9.94 30.90 0.31 -10.19 16 23 H 0.11 2.98 5.42 -52.49 -0.28 2.69 16 24 C 0.07 1.81 5.49 -17.51 -0.10 1.71 16 25 N -0.87 -23.92 13.96 55.48 0.77 -23.15 16 26 Si 0.90 21.23 28.62 -169.99 -4.86 16.36 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.25 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 32 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 33 H 0.13 1.77 6.28 -52.49 -0.33 1.44 16 34 H 0.12 1.78 7.52 -52.49 -0.39 1.39 16 35 H 0.13 1.43 6.06 -52.49 -0.32 1.11 16 36 H 0.40 3.08 7.63 -40.82 -0.31 2.77 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.41 7.18 -51.92 -0.37 0.04 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.12 1.67 6.15 -52.49 -0.32 1.34 16 51 H 0.14 2.97 5.62 -52.49 -0.29 2.68 16 52 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 419.11 15.07 6.32 6.32 Total: -1.00 -31.22 419.11 -9.32 -40.54 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.05 Total: 3.72 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.78 Total: -15.18 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.45 Total: -30.81 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.38 Total: -20.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.22 -9.32 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006640573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.915 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds