Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39713 * 120.19365 * 88.88140 * 3 2 1 5 5 C 1.37822 * 119.90149 * 179.97438 * 4 3 2 6 6 C 1.38515 * 120.29578 * 0.02562 * 5 4 3 7 7 C 1.38106 * 120.39230 * 0.02562 * 6 5 4 8 8 C 1.38643 * 120.08747 * 359.95487 * 7 6 5 9 9 O 1.35708 * 120.14323 * 180.02562 * 8 7 6 10 10 C 1.42904 * 117.00392 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47575 * 180.02562 * 10 9 8 12 12 O 1.21404 * 119.99786 * 359.97438 * 11 10 9 13 13 C 1.41722 * 120.00091 * 179.97438 * 11 10 9 14 14 C 1.37865 * 126.91288 * 0.02562 * 13 11 10 15 15 N 1.34665 * 109.61956 * 180.02562 * 14 13 11 16 16 C 1.46503 * 124.64503 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47170 * 265.02232 * 16 15 14 18 18 H 1.08004 * 119.99598 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00464 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00223 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99625 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47185 * 89.99535 * 21 19 17 23 23 H 1.48502 * 109.47194 * 209.99580 * 21 19 17 24 24 H 1.48504 * 109.47357 * 329.99887 * 21 19 17 25 25 C 1.38021 * 110.71185 * 359.97438 * 15 14 13 26 26 C 1.39146 * 133.03709 * 180.02562 * 25 15 14 27 27 C 1.37769 * 119.94232 * 179.97438 * 26 25 15 28 28 C 1.38732 * 120.63941 * 0.02562 * 27 26 25 29 29 C 1.37795 * 120.26962 * 0.02562 * 28 27 26 30 30 C 1.39190 * 119.67120 * 359.65660 * 29 28 27 31 31 H 1.08009 * 120.04873 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.85110 * 180.29585 * 5 4 3 33 33 H 1.08005 * 119.80190 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.95399 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.46449 * 299.99863 * 10 9 8 36 36 H 1.09004 * 109.47236 * 59.99411 * 10 9 8 37 37 H 1.08004 * 125.18615 * 359.95693 * 14 13 11 38 38 H 1.09003 * 109.46940 * 25.02035 * 16 15 14 39 39 H 1.08994 * 109.47218 * 145.02484 * 16 15 14 40 40 H 0.97000 * 119.99666 * 180.02562 * 20 19 17 41 41 H 1.07993 * 120.02716 * 359.97438 * 26 25 15 42 42 H 1.08000 * 119.67940 * 179.97438 * 27 26 25 43 43 H 1.08004 * 119.86421 * 179.97438 * 28 27 26 44 44 H 1.08002 * 120.16151 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2706 -0.0226 -1.2074 5 6 4.6488 -0.0213 -1.2003 6 6 5.3415 0.0024 -0.0010 7 6 4.6592 0.0245 1.1995 8 6 3.2728 0.0239 1.2112 9 8 2.6013 0.0461 2.3903 10 6 3.3866 0.0700 3.5840 11 6 2.4757 0.0917 4.7843 12 8 1.2712 0.0877 4.6324 13 6 3.0251 0.1169 6.0905 14 6 4.3623 0.1250 6.4263 15 7 4.4917 0.1496 7.7665 16 6 5.7715 0.1639 8.4794 17 6 6.1517 -1.2445 8.8575 18 1 5.5046 -2.0679 8.5934 19 6 7.3257 -1.4820 9.5404 20 7 7.6573 -2.7110 9.8707 21 14 8.4446 -0.0578 9.9977 22 1 8.0624 0.4624 11.3351 23 1 9.8533 -0.5265 10.0329 24 1 8.3077 1.0232 8.9886 25 6 3.2536 0.1595 8.3764 26 6 2.8513 0.1839 9.7082 27 6 1.5096 0.1886 10.0212 28 6 0.5499 0.1687 9.0197 29 6 0.9287 0.1434 7.6950 30 6 2.2809 0.1450 7.3649 31 1 2.7346 -0.0416 -2.1448 32 1 5.1912 -0.0345 -2.1342 33 1 6.4215 0.0028 -0.0048 34 1 5.2064 0.0425 2.1304 35 1 4.0163 -0.8189 3.6223 36 1 4.0148 0.9608 3.5879 37 1 5.1809 0.1123 5.7219 38 1 6.5417 0.5877 7.8349 39 1 5.6784 0.7695 9.3809 40 1 8.4830 -2.8779 10.3514 41 1 3.5901 0.1990 10.4957 42 1 1.2021 0.2071 11.0563 43 1 -0.4985 0.1723 9.2793 44 1 0.1800 0.1275 6.9168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006822311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = 46.190731 kcal Electronic energy + Delta-G solvation = -29720.426829 eV Core-core repulsion = 25569.114052 eV Total energy + Delta-G solvation = -4151.312777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.126 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.25799 -40.64963 -38.80532 -37.42619 -36.82945 -36.40923 -33.68668 -32.22517 -31.80071 -30.76263 -30.02921 -29.70615 -28.30533 -27.11759 -24.24459 -23.72966 -22.93323 -22.48826 -21.57702 -20.47983 -19.67060 -18.73135 -17.96599 -17.38841 -16.81652 -16.47784 -16.43211 -15.98643 -15.42611 -15.24291 -15.04690 -14.80447 -14.59750 -14.42059 -14.21969 -13.92654 -13.57719 -13.41331 -13.30640 -13.27850 -13.00788 -12.82183 -12.77458 -12.43871 -12.27568 -12.23390 -11.94096 -11.73870 -11.45249 -11.34950 -11.34709 -11.12849 -10.93530 -10.56870 -10.32625 -9.88983 -9.45235 -9.40692 -9.19404 -9.01171 -8.61872 -7.92398 -7.31880 -6.48716 -4.55877 0.48118 0.98346 1.13652 1.80677 2.17047 2.63708 2.65254 2.78405 2.96897 3.02120 3.06268 3.27530 3.42824 3.61292 3.73570 4.00120 4.20206 4.28716 4.48412 4.54961 4.70678 4.78144 4.89132 4.92189 4.95487 4.99413 5.05038 5.07423 5.28298 5.37983 5.39543 5.53822 5.77484 5.80121 5.84152 5.90561 5.93911 6.02712 6.09177 6.14981 6.18340 6.26543 6.43018 6.76780 6.90928 6.93698 6.99529 7.00042 7.13938 7.47393 7.51545 7.55127 7.93008 8.03640 8.54848 9.04805 10.63076 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.002663 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.270344 B =10513.512674 C =13131.748733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.261 3.739 3 C -0.064 4.064 4 C -0.033 4.033 5 C -0.163 4.163 6 C -0.047 4.047 7 C -0.212 4.212 8 C 0.180 3.820 9 O -0.286 6.286 10 C 0.010 3.990 11 C 0.432 3.568 12 O -0.460 6.460 13 C -0.308 4.308 14 C 0.156 3.844 15 N -0.417 5.417 16 C 0.198 3.802 17 C -0.555 4.555 18 H 0.084 0.916 19 C 0.083 3.917 20 N -0.878 5.878 21 Si 0.873 3.127 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.264 1.264 25 C 0.086 3.914 26 C -0.100 4.100 27 C -0.118 4.118 28 C -0.139 4.139 29 C -0.083 4.083 30 C -0.054 4.054 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.176 0.824 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.271 0.729 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 7.714 -14.875 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.055 4.055 3 C -0.068 4.068 4 C -0.053 4.053 5 C -0.181 4.181 6 C -0.066 4.066 7 C -0.231 4.231 8 C 0.130 3.870 9 O -0.197 6.197 10 C -0.066 4.066 11 C 0.312 3.688 12 O -0.337 6.337 13 C -0.316 4.316 14 C 0.014 3.986 15 N -0.091 5.091 16 C 0.079 3.921 17 C -0.592 4.592 18 H 0.102 0.898 19 C -0.123 4.123 20 N -0.514 5.514 21 Si 0.699 3.301 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.018 4.018 26 C -0.120 4.120 27 C -0.137 4.137 28 C -0.157 4.157 29 C -0.101 4.101 30 C -0.057 4.057 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.194 0.806 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.047 7.590 -14.551 16.692 hybrid contribution 1.779 0.441 0.539 1.910 sum -1.268 8.031 -14.012 16.200 Atomic orbital electron populations 1.81215 1.11982 1.08931 1.06946 1.25310 0.92330 0.93873 0.93959 1.15316 0.84790 1.14693 0.92040 1.21030 0.94292 0.94319 0.95688 1.20996 0.93484 1.04955 0.98703 1.21224 1.00531 0.93295 0.91528 1.21307 0.92100 1.09240 1.00460 1.19066 0.90636 0.92175 0.85106 1.86210 1.34994 1.86851 1.11679 1.23406 0.95685 1.04156 0.83364 1.19479 0.88888 0.73509 0.86921 1.90567 1.16551 1.38437 1.88117 1.19265 0.92434 1.27056 0.92893 1.22507 0.96771 0.94026 0.85251 1.44192 1.07125 1.52675 1.05068 1.20317 0.78317 1.00226 0.93198 1.21122 1.07959 0.90753 1.39408 0.89822 1.24821 0.97109 0.95818 0.94521 1.69860 1.24285 1.19408 1.37863 0.86912 0.80868 0.82484 0.79877 1.19537 1.20344 1.18891 1.18283 0.83961 1.05463 0.94109 1.20195 0.96297 1.02494 0.92990 1.20744 0.91857 1.02053 0.99065 1.20900 0.99032 1.03328 0.92473 1.20520 0.93917 0.99484 0.96196 1.18742 0.92836 1.03346 0.90779 0.84389 0.84804 0.84799 0.84060 0.88190 0.88408 0.80645 0.93087 0.93772 0.91824 0.85683 0.86012 0.86310 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.59 18.54 41.84 0.78 -5.81 16 2 C 0.26 3.49 14.87 -22.47 -0.33 3.15 16 3 C -0.06 -0.66 5.75 -106.70 -0.61 -1.28 16 4 C -0.03 -0.23 9.75 -39.18 -0.38 -0.61 16 5 C -0.16 -0.90 10.02 -39.63 -0.40 -1.30 16 6 C -0.05 -0.27 10.03 -39.53 -0.40 -0.67 16 7 C -0.21 -1.62 9.03 -39.48 -0.36 -1.97 16 8 C 0.18 1.91 6.69 -38.71 -0.26 1.65 16 9 O -0.29 -3.84 9.10 -38.73 -0.35 -4.19 16 10 C 0.01 0.11 4.50 36.01 0.16 0.27 16 11 C 0.43 6.81 7.03 -32.98 -0.23 6.57 16 12 O -0.46 -8.94 16.14 -14.45 -0.23 -9.17 16 13 C -0.31 -5.09 6.11 -104.88 -0.64 -5.73 16 14 C 0.16 2.39 10.71 -16.45 -0.18 2.22 16 15 N -0.42 -7.70 2.70 -115.28 -0.31 -8.01 16 16 C 0.20 3.93 4.75 -5.19 -0.02 3.91 16 17 C -0.55 -13.62 9.94 -34.44 -0.34 -13.96 16 18 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 19 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.88 -24.08 13.96 55.43 0.77 -23.31 16 21 Si 0.87 18.08 27.47 -169.99 -4.67 13.41 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.26 -5.04 6.54 56.52 0.37 -4.67 16 25 C 0.09 1.63 6.78 -83.95 -0.57 1.06 16 26 C -0.10 -1.76 9.96 -39.42 -0.39 -2.15 16 27 C -0.12 -1.80 10.01 -39.57 -0.40 -2.19 16 28 C -0.14 -2.10 10.03 -39.56 -0.40 -2.50 16 29 C -0.08 -1.43 9.80 -39.39 -0.39 -1.81 16 30 C -0.05 -0.99 6.24 -104.93 -0.65 -1.65 16 31 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 35 H 0.10 0.89 7.66 -51.93 -0.40 0.49 16 36 H 0.10 0.79 7.66 -51.93 -0.40 0.39 16 37 H 0.18 1.87 7.91 -52.48 -0.42 1.46 16 38 H 0.05 0.93 7.16 -51.93 -0.37 0.56 16 39 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.13 2.15 7.38 -52.49 -0.39 1.76 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -33.37 392.49 -9.81 -43.18 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.82 Total: 2.99 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -6.89 Total: -15.00 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 1.24 Total: -37.13 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.59 Total: -13.36 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -4.67 Total: 13.41 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.37 -9.81 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006822311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.370 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds