Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38116 * 120.03713 * 2 1 4 4 C 1.38277 * 120.07257 * 179.72407 * 3 2 1 5 5 C 1.38313 * 120.15400 * 0.27696 * 4 3 2 6 6 C 1.38066 * 120.07962 * 359.97438 * 5 4 3 7 7 C 1.38910 * 120.03723 * 180.24875 * 2 1 3 8 8 N 1.39709 * 120.08082 * 0.02562 * 7 2 1 9 9 C 1.39044 * 120.00521 * 187.03248 * 8 7 2 10 10 N 1.29601 * 125.39857 * 4.14404 * 9 8 7 11 11 N 1.37761 * 115.62179 * 179.97438 * 10 9 8 12 12 C 1.29673 * 115.60216 * 0.02562 * 11 10 9 13 13 S 1.76202 * 125.41425 * 180.02562 * 12 11 10 14 14 C 1.81403 * 102.99675 * 359.97035 * 13 12 11 15 15 C 1.53002 * 109.46885 * 180.02562 * 14 13 12 16 16 H 1.09006 * 109.47173 * 55.00389 * 15 14 13 17 17 C 1.47202 * 109.47349 * 295.00477 * 15 14 13 18 18 N 9.60671 * 112.94267 * 160.69925 * 6 1 2 19 19 C 1.52997 * 109.47192 * 175.00181 * 15 14 13 20 20 C 1.50703 * 109.47198 * 184.99864 * 19 15 14 21 21 H 1.07994 * 119.99923 * 0.02562 * 20 19 15 22 22 C 1.37881 * 119.99628 * 179.97438 * 20 19 15 23 23 N 1.31515 * 119.99454 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00357 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47319 * 89.99404 * 24 22 20 26 26 H 1.48501 * 109.47405 * 209.99286 * 24 22 20 27 27 H 1.48500 * 109.47329 * 329.99587 * 24 22 20 28 28 S 1.76035 * 125.40800 * 183.84240 * 9 8 7 29 29 H 1.09000 * 109.47401 * 90.00220 * 1 2 3 30 30 H 1.09004 * 109.47462 * 210.00235 * 1 2 3 31 31 H 1.09004 * 109.47278 * 329.99614 * 1 2 3 32 32 H 1.08003 * 119.96137 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.91841 * 180.25115 * 4 3 2 34 34 H 1.07998 * 119.95687 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.04478 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99736 * 7.03167 * 8 7 2 37 37 H 1.08996 * 109.47199 * 300.00163 * 14 13 12 38 38 H 1.09003 * 109.46552 * 60.00808 * 14 13 12 39 39 H 1.09001 * 109.47444 * 305.00077 * 19 15 14 40 40 H 1.09004 * 109.46929 * 65.00609 * 19 15 14 41 41 H 0.97000 * 119.99617 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 0.0058 5 6 4.2766 0.0010 0.0058 6 6 3.5919 -1.1979 0.0005 7 6 2.2023 -1.2025 -0.0052 8 7 1.5063 -2.4139 -0.0110 9 6 2.1959 -3.6128 0.1312 10 7 3.4682 -3.7255 0.3510 11 7 3.9422 -5.0145 0.4588 12 6 3.0549 -5.9508 0.3259 13 16 3.3749 -7.6811 0.4169 14 6 5.1614 -7.7500 0.7243 15 6 5.6047 -9.2106 0.8301 16 1 5.2967 -9.7496 -0.0659 17 6 4.9819 -9.8280 2.0124 18 7 4.5028 -10.3020 2.9287 19 6 7.1274 -9.2729 0.9646 20 6 7.5749 -10.7119 0.9454 21 1 6.8462 -11.5027 0.8467 22 6 8.9149 -11.0185 1.0528 23 7 9.3055 -12.2742 1.0356 24 14 10.1755 -9.6506 1.2228 25 1 10.3845 -9.3459 2.6612 26 1 11.4603 -10.0832 0.6168 27 1 9.6839 -8.4349 0.5258 28 16 1.4784 -5.2182 0.0487 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6583 2.1310 0.0004 33 1 4.1192 2.1330 0.0099 34 1 5.3566 0.0054 0.0099 35 1 4.1356 -2.1311 0.0010 36 1 0.5418 -2.4185 -0.1143 37 1 5.6904 -7.2688 -0.0983 38 1 5.3900 -7.2322 1.6558 39 1 7.5878 -8.7381 0.1338 40 1 7.4283 -8.8115 1.9052 41 1 10.2481 -12.4900 1.1115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007032386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = 121.739976 kcal Electronic energy + Delta-G solvation = -24704.490786 eV Core-core repulsion = 21031.110549 eV Total energy + Delta-G solvation = -3673.380237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.077 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64782 -39.28133 -36.96699 -36.38399 -34.12428 -33.31524 -32.33885 -31.25627 -29.92628 -28.45226 -27.32743 -25.53867 -24.20334 -23.08525 -22.33382 -21.64830 -20.87443 -19.75482 -18.13041 -17.51689 -17.10771 -17.01238 -16.33691 -16.05080 -15.78715 -15.04344 -14.82197 -14.50486 -14.33372 -14.29232 -13.89429 -13.80422 -13.28245 -13.23845 -13.09472 -12.86453 -12.82007 -12.60086 -12.19645 -12.05472 -11.94107 -11.71271 -11.50937 -11.48210 -11.21773 -11.04010 -10.81915 -10.47187 -10.39522 -10.04083 -9.98211 -9.90131 -9.71499 -9.42849 -9.06762 -8.67078 -8.34740 -7.79744 -6.16293 -4.18424 -0.04126 0.27672 0.68186 1.04233 1.06643 1.19729 1.95458 1.98495 2.41047 3.24986 3.32792 3.33556 3.36692 3.44719 3.49123 4.03969 4.33955 4.37623 4.43188 4.45359 4.64947 4.78248 4.87272 4.96498 5.03800 5.06719 5.18109 5.20452 5.21491 5.34324 5.60283 5.64469 5.72812 5.95068 5.96332 6.05108 6.05317 6.23034 6.47859 6.57180 6.79836 6.83510 6.97299 7.53287 7.62596 8.20102 8.33646 8.85602 9.42539 10.96318 Molecular weight = 360.08amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.002028 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.718303 B =13801.861458 C =15407.718323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.129 4.129 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.092 4.092 6 C -0.159 4.159 7 C 0.163 3.837 8 N -0.616 5.616 9 C 0.295 3.705 10 N -0.333 5.333 11 N -0.263 5.263 12 C 0.029 3.971 13 S 0.016 5.984 14 C -0.099 4.099 15 C 0.035 3.965 16 H 0.120 0.880 17 C 0.229 3.771 18 N -0.445 5.445 19 C 0.001 3.999 20 C -0.532 4.532 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.893 5.893 24 Si 0.876 3.124 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.261 1.261 28 S 0.088 5.912 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.177 0.823 36 H 0.425 0.575 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.026 0.974 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.156 26.891 -6.198 33.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.133 4.133 3 C -0.113 4.113 4 C -0.164 4.164 5 C -0.111 4.111 6 C -0.181 4.181 7 C 0.065 3.935 8 N -0.248 5.248 9 C -0.087 4.087 10 N -0.168 5.168 11 N -0.091 5.091 12 C -0.370 4.370 13 S 0.246 5.754 14 C -0.250 4.250 15 C 0.011 3.989 16 H 0.138 0.862 17 C -0.089 4.089 18 N -0.122 5.122 19 C -0.039 4.039 20 C -0.570 4.570 21 H 0.094 0.906 22 C -0.129 4.129 23 N -0.531 5.531 24 Si 0.703 3.297 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.185 1.185 28 S 0.322 5.678 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.193 0.807 36 H 0.265 0.735 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.989 25.303 -4.822 32.605 hybrid contribution 1.376 1.842 -0.123 2.303 sum -18.613 27.145 -4.946 33.283 Atomic orbital electron populations 1.20712 0.91137 1.02833 1.02385 1.19419 0.95802 0.91413 1.06660 1.20778 0.94202 0.96541 0.99778 1.21146 0.94202 0.98268 1.02750 1.21087 1.00167 0.91687 0.98184 1.22244 0.92386 1.01787 1.01676 1.17647 0.91904 0.83253 1.00662 1.41405 1.09028 0.99563 1.74767 1.25991 0.92910 0.91129 0.98645 1.75022 1.06998 1.10537 1.24242 1.75576 1.24981 0.92111 1.16475 1.30474 0.94643 1.05929 1.05960 1.85965 1.12976 0.89031 1.87397 1.24051 0.91654 1.01137 1.08201 1.18771 0.98850 0.89600 0.91681 0.86192 1.28884 0.92227 0.93356 0.94436 1.81117 1.11064 1.08855 1.11115 1.19698 0.86068 0.99728 0.98408 1.20952 0.93678 0.90220 1.52130 0.90586 1.24963 0.98438 0.95401 0.94120 1.69896 1.16423 1.17306 1.49469 0.86841 0.81170 0.82827 0.78901 1.20164 1.21142 1.18539 1.85606 1.10370 0.95338 1.76476 0.91008 0.92283 0.90754 0.85726 0.86026 0.85600 0.80693 0.73527 0.86309 0.87713 0.93809 0.95613 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 9.51 36.00 0.34 -0.18 16 2 C -0.13 -0.98 5.90 -104.42 -0.62 -1.60 16 3 C -0.09 -0.68 9.70 -39.61 -0.38 -1.07 16 4 C -0.14 -1.13 10.04 -39.54 -0.40 -1.52 16 5 C -0.09 -0.86 10.04 -39.62 -0.40 -1.26 16 6 C -0.16 -1.75 9.12 -39.38 -0.36 -2.11 16 7 C 0.16 1.56 6.60 -83.75 -0.55 1.00 16 8 N -0.62 -5.19 5.43 -10.35 -0.06 -5.25 16 9 C 0.29 3.19 8.29 -87.33 -0.72 2.47 16 10 N -0.33 -4.50 8.28 30.87 0.26 -4.24 16 11 N -0.26 -3.77 11.62 31.12 0.36 -3.41 16 12 C 0.03 0.37 7.82 51.85 0.41 0.78 16 13 S 0.02 0.20 21.57 -107.50 -2.32 -2.11 16 14 C -0.10 -1.35 4.96 37.16 0.18 -1.16 16 15 C 0.03 0.58 2.22 -93.41 -0.21 0.37 16 16 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 17 C 0.23 4.41 13.31 -20.71 -0.28 4.13 16 18 N -0.45 -9.46 18.55 42.21 0.78 -8.68 16 19 C 0.00 0.03 3.49 -27.88 -0.10 -0.07 16 20 C -0.53 -13.80 9.15 -34.44 -0.32 -14.12 16 21 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 22 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 23 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 24 Si 0.88 20.25 27.47 -169.99 -4.67 15.58 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 28 S 0.09 0.85 23.39 -107.50 -2.51 -1.66 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.22 6.67 -51.93 -0.35 -0.13 16 31 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.18 2.24 4.60 -63.01 -0.29 1.95 16 36 H 0.42 2.27 6.94 -40.82 -0.28 1.99 16 37 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 39 H 0.04 0.84 7.20 -51.93 -0.37 0.46 16 40 H 0.03 0.53 7.57 -51.93 -0.39 0.14 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -32.36 380.59 -9.78 -42.15 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.64 Total: -0.10 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.49 Total: -12.40 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 2.12 Total: -47.17 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -4.83 Total: -3.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.36 -9.78 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007032386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.885 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds