Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38116 * 120.03713 * 2 1 4 4 C 1.38277 * 120.07257 * 179.72407 * 3 2 1 5 5 C 1.38313 * 120.15400 * 0.27696 * 4 3 2 6 6 C 1.38066 * 120.07962 * 359.97438 * 5 4 3 7 7 C 1.38910 * 120.03723 * 180.24875 * 2 1 3 8 8 N 1.39709 * 120.08082 * 0.02562 * 7 2 1 9 9 C 1.39044 * 120.00521 * 187.03248 * 8 7 2 10 10 N 1.29601 * 125.39857 * 4.14404 * 9 8 7 11 11 N 1.37761 * 115.62179 * 179.97438 * 10 9 8 12 12 C 1.29673 * 115.60216 * 0.02562 * 11 10 9 13 13 S 1.76202 * 125.41425 * 180.02562 * 12 11 10 14 14 C 1.81403 * 102.99675 * 359.97035 * 13 12 11 15 15 C 1.53002 * 109.46885 * 180.02562 * 14 13 12 16 16 H 1.09006 * 109.47173 * 55.00389 * 15 14 13 17 17 C 1.47202 * 109.47349 * 295.00477 * 15 14 13 18 18 N 9.60671 * 112.94267 * 160.69925 * 6 1 2 19 19 C 1.52997 * 109.47192 * 175.00181 * 15 14 13 20 20 C 1.50703 * 109.47198 * 184.99864 * 19 15 14 21 21 H 1.07994 * 119.99923 * 0.02562 * 20 19 15 22 22 C 1.37881 * 119.99628 * 179.97438 * 20 19 15 23 23 N 1.31515 * 119.99454 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00357 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47319 * 89.99404 * 24 22 20 26 26 H 1.48501 * 109.47405 * 209.99286 * 24 22 20 27 27 H 1.48500 * 109.47329 * 329.99587 * 24 22 20 28 28 S 1.76035 * 125.40800 * 183.84240 * 9 8 7 29 29 H 1.09000 * 109.47401 * 90.00220 * 1 2 3 30 30 H 1.09004 * 109.47462 * 210.00235 * 1 2 3 31 31 H 1.09004 * 109.47278 * 329.99614 * 1 2 3 32 32 H 1.08003 * 119.96137 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.91841 * 180.25115 * 4 3 2 34 34 H 1.07998 * 119.95687 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.04478 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99736 * 7.03167 * 8 7 2 37 37 H 1.08996 * 109.47199 * 300.00163 * 14 13 12 38 38 H 1.09003 * 109.46552 * 60.00808 * 14 13 12 39 39 H 1.09001 * 109.47444 * 305.00077 * 19 15 14 40 40 H 1.09004 * 109.46929 * 65.00609 * 19 15 14 41 41 H 0.97000 * 119.99617 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 0.0058 5 6 4.2766 0.0010 0.0058 6 6 3.5919 -1.1979 0.0005 7 6 2.2023 -1.2025 -0.0052 8 7 1.5063 -2.4139 -0.0110 9 6 2.1959 -3.6128 0.1312 10 7 3.4682 -3.7255 0.3510 11 7 3.9422 -5.0145 0.4588 12 6 3.0549 -5.9508 0.3259 13 16 3.3749 -7.6811 0.4169 14 6 5.1614 -7.7500 0.7243 15 6 5.6047 -9.2106 0.8301 16 1 5.2967 -9.7496 -0.0659 17 6 4.9819 -9.8280 2.0124 18 7 4.5028 -10.3020 2.9287 19 6 7.1274 -9.2729 0.9646 20 6 7.5749 -10.7119 0.9454 21 1 6.8462 -11.5027 0.8467 22 6 8.9149 -11.0185 1.0528 23 7 9.3055 -12.2742 1.0356 24 14 10.1755 -9.6506 1.2228 25 1 10.3845 -9.3459 2.6612 26 1 11.4603 -10.0832 0.6168 27 1 9.6839 -8.4349 0.5258 28 16 1.4784 -5.2182 0.0487 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6583 2.1310 0.0004 33 1 4.1192 2.1330 0.0099 34 1 5.3566 0.0054 0.0099 35 1 4.1356 -2.1311 0.0010 36 1 0.5418 -2.4185 -0.1143 37 1 5.6904 -7.2688 -0.0983 38 1 5.3900 -7.2322 1.6558 39 1 7.5878 -8.7381 0.1338 40 1 7.4283 -8.8115 1.9052 41 1 10.2481 -12.4900 1.1115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007032386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = 104.194595 kcal Electronic energy + Delta-G solvation = -24705.251610 eV Core-core repulsion = 21031.110549 eV Total energy + Delta-G solvation = -3674.141062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.077 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36618 -40.06237 -38.49352 -37.08563 -35.77696 -34.23571 -33.88347 -32.06493 -30.60717 -30.10978 -27.81207 -26.41010 -25.67232 -23.82957 -23.40346 -22.96912 -21.62040 -20.55303 -19.10226 -18.80288 -18.44626 -18.24995 -17.30151 -16.80635 -16.62183 -16.45591 -15.72096 -15.49914 -15.41181 -15.03557 -15.00773 -14.77682 -14.45468 -14.39968 -14.28118 -13.89225 -13.77550 -13.63256 -13.29297 -13.24618 -13.13733 -12.80315 -12.69271 -12.56338 -12.20787 -12.06349 -11.98637 -11.94164 -11.73761 -11.39400 -11.39057 -11.26921 -10.80291 -10.73717 -10.49553 -9.67878 -9.14179 -8.62056 -8.24777 -6.30456 -0.89024 -0.55925 -0.18075 0.12591 0.41823 0.50902 0.91954 1.13390 1.44225 1.45404 1.55490 1.71727 1.84508 1.88094 2.40544 2.86259 3.00262 3.13909 3.21531 3.68973 3.83589 3.88394 3.95865 4.06395 4.22424 4.39378 4.39958 4.42395 4.58209 4.69248 4.75450 4.78953 4.84951 5.09969 5.19478 5.23086 5.33412 5.35557 5.43122 5.61180 5.61890 5.77956 5.96664 6.16567 6.23696 6.66470 6.78255 6.79048 7.33869 8.91504 Molecular weight = 360.08amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.002028 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.718303 B =13801.861458 C =15407.718323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.126 4.126 3 C -0.098 4.098 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.186 4.186 7 C 0.144 3.856 8 N -0.602 5.602 9 C 0.290 3.710 10 N -0.363 5.363 11 N -0.287 5.287 12 C 0.009 3.991 13 S 0.025 5.975 14 C -0.095 4.095 15 C 0.042 3.958 16 H 0.136 0.864 17 C 0.240 3.760 18 N -0.485 5.485 19 C 0.001 3.999 20 C -0.530 4.530 21 H 0.036 0.964 22 C 0.007 3.993 23 N -0.950 5.950 24 Si 0.941 3.059 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.224 1.224 28 S 0.148 5.852 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.156 0.844 36 H 0.439 0.561 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.942 30.665 -7.042 37.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.130 4.130 3 C -0.116 4.116 4 C -0.164 4.164 5 C -0.128 4.128 6 C -0.208 4.208 7 C 0.046 3.954 8 N -0.235 5.235 9 C -0.091 4.091 10 N -0.199 5.199 11 N -0.116 5.116 12 C -0.391 4.391 13 S 0.254 5.746 14 C -0.246 4.246 15 C 0.019 3.981 16 H 0.154 0.846 17 C -0.077 4.077 18 N -0.162 5.162 19 C -0.040 4.040 20 C -0.568 4.568 21 H 0.055 0.945 22 C -0.190 4.190 23 N -0.590 5.590 24 Si 0.764 3.236 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.147 1.147 28 S 0.382 5.618 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.173 0.827 36 H 0.282 0.718 37 H 0.156 0.844 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.830 29.114 -5.680 36.830 hybrid contribution 1.770 0.743 0.115 1.923 sum -20.060 29.858 -5.565 36.399 Atomic orbital electron populations 1.20812 0.88785 1.03973 1.03574 1.19804 0.97537 0.90673 1.04959 1.21194 0.94159 0.97608 0.98641 1.21450 0.94868 0.98444 1.01662 1.21243 1.00655 0.91994 0.98925 1.22218 0.93429 1.01599 1.03589 1.17813 0.91681 0.84172 1.01722 1.41433 1.09564 0.98707 1.73838 1.26240 0.92780 0.92473 0.97625 1.75087 1.08428 1.10111 1.26241 1.75543 1.26282 0.92766 1.17014 1.30560 0.96412 1.05675 1.06443 1.85859 1.11659 0.89374 1.87694 1.23860 0.93124 0.98545 1.09071 1.18743 0.96483 0.91856 0.91061 0.84633 1.29461 0.91443 0.92395 0.94405 1.81114 1.12366 1.10274 1.12462 1.19641 0.88723 0.96115 0.99503 1.21320 0.92859 0.92385 1.50224 0.94549 1.25946 1.01083 0.97785 0.94192 1.70068 1.16806 1.20011 1.52142 0.85800 0.78028 0.80821 0.78928 1.20363 1.21561 1.14655 1.85339 1.07453 0.93486 1.75511 0.89665 0.91479 0.89356 0.82936 0.83925 0.85233 0.82733 0.71834 0.84421 0.87804 0.91193 0.95219 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.51 71.23 0.68 0.02 16 2 C -0.13 -1.61 5.90 -19.73 -0.12 -1.73 16 3 C -0.10 -1.14 9.70 22.25 0.22 -0.93 16 4 C -0.14 -2.00 10.04 22.30 0.22 -1.78 16 5 C -0.11 -2.01 10.04 22.25 0.22 -1.78 16 6 C -0.19 -4.11 9.12 22.40 0.20 -3.90 16 7 C 0.14 2.58 6.60 38.22 0.25 2.83 16 8 N -0.60 -9.22 5.43 -186.64 -1.01 -10.23 16 9 C 0.29 5.98 8.29 179.20 1.49 7.46 16 10 N -0.36 -9.72 8.28 -56.26 -0.47 -10.18 16 11 N -0.29 -8.05 11.62 -55.46 -0.64 -8.69 16 12 C 0.01 0.21 7.82 130.56 1.02 1.23 16 13 S 0.02 0.58 21.57 -56.49 -1.22 -0.63 16 14 C -0.10 -2.41 4.96 71.98 0.36 -2.05 16 15 C 0.04 1.34 2.22 -12.60 -0.03 1.31 16 16 H 0.14 3.93 8.14 -2.38 -0.02 3.91 16 17 C 0.24 9.21 13.31 89.43 1.19 10.40 16 18 N -0.49 -20.83 18.55 20.02 0.37 -20.46 16 19 C 0.00 0.02 3.49 29.85 0.10 0.12 16 20 C -0.53 -27.73 9.15 25.60 0.23 -27.50 16 21 H 0.04 2.14 7.84 -2.91 -0.02 2.11 16 22 C 0.01 0.40 5.47 84.66 0.46 0.86 16 23 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 24 Si 0.94 41.22 27.47 68.60 1.88 43.10 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.22 -8.43 6.54 99.48 0.65 -7.78 16 28 S 0.15 2.60 23.39 -56.49 -1.32 1.27 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.28 6.67 -2.38 -0.02 0.27 16 31 H 0.09 0.30 8.09 -2.38 -0.02 0.28 16 32 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.16 4.12 4.60 -16.65 -0.08 4.04 16 36 H 0.44 3.65 6.94 -92.71 -0.64 3.01 16 37 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.07 2.43 7.20 -2.39 -0.02 2.42 16 40 H 0.03 1.15 7.57 -2.38 -0.02 1.14 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -73.21 380.59 4.73 -68.48 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.33 Total: 10.40 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 6.51 Total: -15.44 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -1.45 Total: -107.18 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.10 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.54 Total: 0.64 kcal Total: -73.21 4.73 -68.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007032386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.673 kcal (2) G-P(sol) polarization free energy of solvation -73.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds