Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38114 * 120.03997 * 2 1 4 4 C 1.38277 * 120.07626 * 180.27890 * 3 2 1 5 5 C 1.38311 * 120.15296 * 359.72412 * 4 3 2 6 6 C 1.38078 * 120.07623 * 359.97438 * 5 4 3 7 7 C 1.38917 * 120.03827 * 179.72225 * 2 1 3 8 8 N 1.39715 * 120.07473 * 0.02562 * 7 2 1 9 9 C 1.39038 * 119.99830 * 187.93079 * 8 7 2 10 10 N 1.29589 * 125.40506 * 6.90890 * 9 8 7 11 11 N 1.37765 * 115.62853 * 179.86266 * 10 9 8 12 12 C 1.29674 * 115.59820 * 0.43534 * 11 10 9 13 13 S 1.76199 * 125.41433 * 179.75446 * 12 11 10 14 14 C 1.81395 * 102.99933 * 0.02562 * 13 12 11 15 15 C 1.52997 * 109.47149 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.47077 * 305.00206 * 15 14 13 17 17 C 1.47199 * 109.47144 * 64.99693 * 15 14 13 18 18 N 9.42226 * 119.20637 * 189.08636 * 6 1 2 19 19 C 1.52998 * 109.47403 * 184.99798 * 15 14 13 20 20 C 1.50696 * 109.47297 * 174.99533 * 19 15 14 21 21 H 1.07997 * 120.00147 * 0.02562 * 20 19 15 22 22 C 1.37879 * 120.00153 * 180.02562 * 20 19 15 23 23 N 1.31517 * 119.99970 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00013 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47401 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47015 * 120.00238 * 24 22 20 27 27 H 1.48504 * 109.46799 * 239.99434 * 24 22 20 28 28 S 1.76042 * 125.40174 * 187.22023 * 9 8 7 29 29 H 1.09001 * 109.47329 * 270.27425 * 1 2 3 30 30 H 1.09005 * 109.47080 * 30.27564 * 1 2 3 31 31 H 1.08992 * 109.47341 * 150.27221 * 1 2 3 32 32 H 1.08001 * 119.96226 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.92324 * 179.74544 * 4 3 2 34 34 H 1.07999 * 119.96695 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.03520 * 179.97438 * 6 5 4 36 36 H 0.96999 * 119.99972 * 7.92338 * 8 7 2 37 37 H 1.09001 * 109.47030 * 299.99547 * 14 13 12 38 38 H 1.08993 * 109.47402 * 60.00010 * 14 13 12 39 39 H 1.08993 * 109.47108 * 295.00004 * 19 15 14 40 40 H 1.09009 * 109.46816 * 54.99764 * 19 15 14 41 41 H 0.96997 * 120.00158 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1965 -0.0058 5 6 4.2767 0.0010 -0.0059 6 6 3.5919 -1.1980 0.0004 7 6 2.2024 -1.2026 0.0058 8 7 1.5062 -2.4139 0.0112 9 6 2.1937 -3.6101 0.1831 10 7 3.4524 -3.7178 0.4720 11 7 3.9266 -5.0050 0.5994 12 6 3.0547 -5.9450 0.4052 13 16 3.3802 -7.6742 0.4966 14 6 5.1457 -7.7359 0.9084 15 6 5.5916 -9.1949 1.0247 16 1 4.9587 -9.7118 1.7461 17 6 5.4747 -9.8498 -0.2884 18 7 5.3838 -10.3570 -1.2957 19 6 7.0471 -9.2476 1.4932 20 6 7.4483 -10.6814 1.7258 21 1 6.7366 -11.4757 1.5561 22 6 8.7242 -10.9793 2.1554 23 7 9.5912 -10.0121 2.3617 24 14 9.2217 -12.7567 2.4431 25 1 8.0728 -13.6475 2.1407 26 1 10.3625 -13.1010 1.5568 27 1 9.6256 -12.9343 3.8611 28 16 1.4942 -5.2188 0.0353 29 1 -0.3634 0.0049 1.0276 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8923 -0.5096 32 1 1.6584 2.1310 -0.0004 33 1 4.1193 2.1328 -0.0100 34 1 5.3566 0.0052 -0.0100 35 1 4.1356 -2.1311 -0.0001 36 1 0.5432 -2.4203 -0.1050 37 1 5.7192 -7.2427 0.1236 38 1 5.3155 -7.2270 1.8571 39 1 7.6904 -8.8095 0.7302 40 1 7.1504 -8.6861 2.4218 41 1 10.4886 -10.2216 2.6642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007032389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = 117.725535 kcal Electronic energy + Delta-G solvation = -24636.498449 eV Core-core repulsion = 20962.944133 eV Total energy + Delta-G solvation = -3673.554316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.077 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.59646 -39.23065 -36.92513 -36.33390 -34.11996 -33.27477 -32.32644 -31.20476 -29.87061 -27.87639 -27.29392 -25.47568 -24.13403 -23.04281 -22.29177 -21.93512 -20.81996 -19.70912 -18.08014 -17.47484 -17.04188 -16.69903 -16.21599 -15.93602 -15.70411 -14.98532 -14.82426 -14.43313 -14.30754 -14.21180 -13.96442 -13.76348 -13.29616 -13.14660 -12.98167 -12.85190 -12.79553 -12.27627 -12.11984 -11.93064 -11.88288 -11.58797 -11.44387 -11.27467 -11.12894 -10.94812 -10.77340 -10.53564 -10.40153 -10.38019 -9.97780 -9.66008 -9.65216 -9.32272 -9.02848 -8.52025 -8.29449 -7.73534 -6.15442 -4.19872 0.01880 0.33547 0.73975 1.09288 1.12373 1.24063 2.04060 2.04902 2.46087 3.25619 3.34209 3.38085 3.44554 3.53312 3.53687 4.11132 4.35854 4.41337 4.48647 4.54475 4.68638 4.82978 4.91129 5.08300 5.10174 5.11267 5.22762 5.23841 5.33322 5.37781 5.63746 5.76202 5.78360 5.99445 6.09506 6.11578 6.26667 6.27092 6.50275 6.61986 6.83787 7.33089 7.40490 7.68890 7.78393 8.12302 8.26116 8.84268 9.46217 10.95183 Molecular weight = 360.08amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.001856 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.357468 B =15083.780871 C =16279.115100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.129 4.129 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.092 4.092 6 C -0.155 4.155 7 C 0.165 3.835 8 N -0.617 5.617 9 C 0.294 3.706 10 N -0.331 5.331 11 N -0.261 5.261 12 C 0.031 3.969 13 S 0.008 5.992 14 C -0.094 4.094 15 C 0.023 3.977 16 H 0.115 0.885 17 C 0.233 3.767 18 N -0.453 5.453 19 C 0.038 3.962 20 C -0.530 4.530 21 H 0.059 0.941 22 C 0.064 3.936 23 N -0.888 5.888 24 Si 0.893 3.107 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.282 1.282 28 S 0.083 5.917 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.172 0.828 36 H 0.424 0.576 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.031 0.969 40 H 0.044 0.956 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.710 21.939 -2.831 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.133 4.133 3 C -0.113 4.113 4 C -0.164 4.164 5 C -0.111 4.111 6 C -0.177 4.177 7 C 0.067 3.933 8 N -0.249 5.249 9 C -0.088 4.088 10 N -0.166 5.166 11 N -0.090 5.090 12 C -0.368 4.368 13 S 0.239 5.761 14 C -0.244 4.244 15 C -0.001 4.001 16 H 0.132 0.868 17 C -0.084 4.084 18 N -0.129 5.129 19 C -0.002 4.002 20 C -0.568 4.568 21 H 0.078 0.922 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.721 3.279 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.208 1.208 28 S 0.317 5.683 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.189 0.811 36 H 0.264 0.736 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.924 20.463 -4.361 29.590 hybrid contribution 0.834 0.366 0.707 1.153 sum -20.089 20.829 -3.654 29.168 Atomic orbital electron populations 1.20691 0.91149 1.02544 1.02452 1.19414 0.95777 0.91410 1.06743 1.20773 0.94204 0.96531 0.99791 1.21137 0.94187 0.98254 1.02788 1.21087 1.00190 0.91671 0.98118 1.22101 0.92348 1.01567 1.01726 1.17628 0.91874 0.83299 1.00547 1.41406 1.09220 0.99733 1.74564 1.25969 0.93153 0.91075 0.98559 1.75081 1.07304 1.10803 1.23411 1.75598 1.24692 0.92019 1.16651 1.30475 0.94800 1.05899 1.05617 1.85903 1.15141 0.89191 1.85899 1.24037 0.91166 1.01279 1.07958 1.19053 1.04530 0.89063 0.87427 0.86771 1.28767 0.91943 0.93310 0.94412 1.80840 1.10118 1.09268 1.12722 1.19240 0.84453 0.98753 0.97788 1.21119 0.97722 0.91763 1.46195 0.92246 1.24954 0.96445 0.97441 0.95064 1.69945 1.05440 1.31653 1.45606 0.86505 0.78711 0.84800 0.77890 1.19627 1.20926 1.20782 1.85581 1.12340 0.95544 1.74795 0.90958 0.90820 0.92461 0.85738 0.86020 0.85565 0.81114 0.73565 0.87756 0.86344 0.95073 0.93742 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.64 36.01 0.35 -0.19 16 2 C -0.13 -1.02 5.90 -104.42 -0.62 -1.64 16 3 C -0.09 -0.71 9.70 -39.61 -0.38 -1.09 16 4 C -0.14 -1.17 10.04 -39.54 -0.40 -1.57 16 5 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 6 C -0.16 -1.78 9.07 -39.38 -0.36 -2.14 16 7 C 0.16 1.63 6.59 -83.75 -0.55 1.08 16 8 N -0.62 -5.45 5.48 -10.35 -0.06 -5.51 16 9 C 0.29 3.33 8.27 -87.34 -0.72 2.61 16 10 N -0.33 -4.68 8.36 30.87 0.26 -4.42 16 11 N -0.26 -3.94 11.62 31.12 0.36 -3.57 16 12 C 0.03 0.42 7.82 51.85 0.41 0.82 16 13 S 0.01 0.11 21.57 -107.50 -2.32 -2.21 16 14 C -0.09 -1.36 4.96 37.16 0.18 -1.18 16 15 C 0.02 0.40 2.22 -93.41 -0.21 0.20 16 16 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 17 C 0.23 4.56 13.29 -20.91 -0.28 4.28 16 18 N -0.45 -9.63 18.51 41.98 0.78 -8.85 16 19 C 0.04 0.83 4.42 -27.89 -0.12 0.71 16 20 C -0.53 -13.60 8.60 -34.44 -0.30 -13.90 16 21 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 24 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 S 0.08 0.85 23.39 -107.50 -2.51 -1.67 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.06 0.21 6.45 -51.93 -0.34 -0.13 16 32 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.17 2.29 4.73 -54.61 -0.26 2.03 16 36 H 0.42 2.42 6.79 -40.82 -0.28 2.14 16 37 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 38 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -31.24 384.07 -10.11 -41.35 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.63 Total: -0.87 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.49 Total: -11.68 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 2.08 Total: -46.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -4.83 Total: -3.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.24 -10.11 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007032389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.072 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds