Wall clock time and date at job start Tue Mar 31 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.96276 * 2 1 4 4 C 1.38281 * 120.12742 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.96299 * 180.02562 * 4 3 2 6 6 C 1.38122 * 120.06730 * 359.97438 * 4 3 2 7 7 C 1.38823 * 119.93691 * 0.02562 * 6 4 3 8 8 N 1.40188 * 120.06945 * 180.02562 * 7 6 4 9 9 C 1.37866 * 126.53547 * 310.16293 * 8 7 6 10 10 C 1.34399 * 106.94592 * 180.22336 * 9 8 7 11 11 N 1.34377 * 108.40410 * 359.77487 * 10 9 8 12 12 C 1.31275 * 109.36165 * 0.02562 * 11 10 9 13 13 S 1.76198 * 125.82090 * 179.97438 * 12 11 10 14 14 C 1.81008 * 99.99946 * 0.02562 * 13 12 11 15 15 C 1.50697 * 109.46759 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00521 * 359.72922 * 15 14 13 17 17 N 1.34784 * 119.99774 * 180.02562 * 15 14 13 18 18 C 1.46499 * 119.99971 * 359.72768 * 17 15 14 19 19 C 1.46499 * 119.99893 * 179.72962 * 17 15 14 20 20 C 1.50697 * 109.47293 * 90.00297 * 19 17 15 21 21 H 1.07997 * 120.00010 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00091 * 180.02562 * 20 19 17 23 23 N 1.31517 * 120.00149 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47614 * 119.99582 * 24 22 20 27 27 H 1.48497 * 109.46911 * 239.99550 * 24 22 20 28 28 C 1.38117 * 119.97154 * 180.25385 * 2 1 3 29 29 H 1.08994 * 109.47196 * 90.00135 * 1 2 3 30 30 H 1.09004 * 109.46859 * 209.99776 * 1 2 3 31 31 H 1.09001 * 109.47337 * 329.99632 * 1 2 3 32 32 H 1.07999 * 119.93597 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.46433 * 269.97531 * 5 4 3 34 34 H 1.08993 * 109.47436 * 29.97809 * 5 4 3 35 35 H 1.09002 * 109.46959 * 149.97822 * 5 4 3 36 36 H 1.08004 * 120.03207 * 180.02562 * 6 4 3 37 37 H 1.07995 * 126.52210 * 359.97438 * 9 8 7 38 38 H 1.07999 * 125.79239 * 179.77969 * 10 9 8 39 39 H 1.09001 * 109.46816 * 60.00508 * 14 13 12 40 40 H 1.08993 * 109.47387 * 300.00147 * 14 13 12 41 41 H 1.08999 * 109.47256 * 89.99766 * 18 17 15 42 42 H 1.08998 * 109.47416 * 209.99869 * 18 17 15 43 43 H 1.09008 * 109.47058 * 330.00468 * 18 17 15 44 44 H 1.08997 * 109.46865 * 210.00034 * 19 17 15 45 45 H 1.08998 * 109.47058 * 329.99547 * 19 17 15 46 46 H 0.96995 * 120.00744 * 180.02562 * 23 22 20 47 47 H 1.08009 * 120.03263 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2020 0.0005 5 6 4.3294 2.5098 0.0011 6 6 4.2759 0.0086 0.0016 7 6 3.5853 -1.1957 0.0016 8 7 4.2884 -2.4085 0.0032 9 6 5.3191 -2.7609 -0.8419 10 6 5.6989 -4.0038 -0.4995 11 7 4.9354 -4.4128 0.5279 12 6 4.0847 -3.4639 0.8428 13 16 2.8810 -3.5426 2.1271 14 6 3.2125 -5.2030 2.7672 15 6 2.2734 -5.4981 3.9082 16 8 1.4634 -4.6659 4.2578 17 7 2.3376 -6.6848 4.5441 18 6 3.3163 -7.6899 4.1222 19 6 1.4287 -6.9694 5.6572 20 6 0.1700 -7.6068 5.1276 21 1 0.0581 -7.7819 4.0678 22 6 -0.8392 -7.9654 5.9959 23 7 -0.7032 -7.7517 7.2864 24 14 -2.3997 -8.7547 5.3394 25 1 -2.3055 -8.8845 3.8631 26 1 -2.5667 -10.1001 5.9452 27 1 -3.5678 -7.9066 5.6878 28 6 2.1970 -1.1965 -0.0053 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6560 2.1323 0.0004 33 1 4.5106 2.8250 -1.0264 34 1 3.7373 3.2673 0.5145 35 1 5.2819 2.3827 0.5156 36 1 5.3559 0.0124 0.0024 37 1 5.7383 -2.1551 -1.6315 38 1 6.4844 -4.5764 -0.9701 39 1 4.2420 -5.2571 3.1212 40 1 3.0621 -5.9350 1.9737 41 1 4.2441 -7.5488 4.6767 42 1 2.9223 -8.6866 4.3209 43 1 3.5109 -7.5820 3.0551 44 1 1.9135 -7.6497 6.3573 45 1 1.1780 -6.0399 6.1684 46 1 -1.4129 -8.0043 7.8974 47 1 1.6570 -2.1319 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007056545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:18 Heat of formation + Delta-G solvation = 53.049818 kcal Electronic energy + Delta-G solvation = -28467.388941 eV Core-core repulsion = 24549.536209 eV Total energy + Delta-G solvation = -3917.852731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21947 -39.73071 -38.94820 -34.89500 -34.71226 -33.95129 -32.67492 -30.60789 -30.07548 -29.55789 -27.61306 -27.41411 -27.09907 -25.67134 -23.66582 -22.80372 -21.90019 -21.21467 -20.73622 -18.75347 -18.10478 -16.68022 -16.59369 -16.41012 -16.35842 -16.08364 -15.22289 -15.15900 -14.87957 -14.51361 -14.36257 -14.17516 -14.09584 -13.70781 -13.55427 -13.43416 -13.24603 -13.13589 -12.87167 -12.60734 -12.36340 -12.19861 -12.10443 -11.94916 -11.87962 -11.84479 -11.49984 -11.22816 -10.87627 -10.64327 -10.47026 -10.40072 -10.22119 -10.16662 -9.63026 -9.50542 -9.11830 -8.98983 -8.84151 -8.44562 -7.72402 -7.37387 -6.05252 -4.10040 0.65314 0.91378 1.19474 1.81699 2.18702 2.62156 2.88109 3.24290 3.26372 3.30074 3.37806 3.42560 3.91450 4.34444 4.37302 4.44293 4.49992 4.71536 4.85272 4.94150 4.96414 5.00836 5.08858 5.15253 5.19613 5.25846 5.29460 5.30706 5.37042 5.41949 5.49063 5.52329 5.63249 5.71642 5.73182 5.85747 5.94004 6.04922 6.10488 6.20344 6.22364 6.42198 6.49717 6.93694 6.98103 7.40203 7.47561 7.69729 7.90588 8.20922 8.29376 8.82604 8.98804 9.54965 11.02977 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.002425 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.855749 B =11542.402130 C =12952.677908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.059 4.059 3 C -0.115 4.115 4 C -0.069 4.069 5 C -0.114 4.114 6 C -0.120 4.120 7 C 0.125 3.875 8 N -0.402 5.402 9 C -0.050 4.050 10 C -0.013 4.013 11 N -0.488 5.488 12 C 0.190 3.810 13 S 0.062 5.938 14 C -0.137 4.137 15 C 0.521 3.479 16 O -0.529 6.529 17 N -0.593 5.593 18 C 0.080 3.920 19 C 0.245 3.755 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 C -0.114 4.114 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.263 0.737 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.526 17.124 -18.562 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.070 4.070 5 C -0.170 4.170 6 C -0.140 4.140 7 C 0.034 3.966 8 N -0.085 5.085 9 C -0.182 4.182 10 C -0.161 4.161 11 N -0.210 5.210 12 C -0.179 4.179 13 S 0.292 5.708 14 C -0.289 4.289 15 C 0.305 3.695 16 O -0.407 6.407 17 N -0.325 5.325 18 C -0.065 4.065 19 C 0.126 3.874 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.134 4.134 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.194 0.806 38 H 0.192 0.808 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.213 17.603 -17.416 27.183 hybrid contribution 0.324 -0.918 -1.267 1.598 sum 11.537 16.685 -18.683 27.579 Atomic orbital electron populations 1.20862 0.90091 1.03855 1.02724 1.19807 0.96684 0.91983 0.97520 1.21068 0.93400 0.97915 1.00986 1.19750 0.93763 0.94792 0.98647 1.20802 1.00092 0.93567 1.02573 1.20861 1.00029 0.90346 1.02716 1.17650 0.91074 0.83699 1.04190 1.42940 1.27574 1.11753 1.26214 1.22849 0.95144 0.99618 1.00589 1.22327 1.02147 0.94200 0.97458 1.70850 1.07518 1.26675 1.15965 1.26017 1.04477 0.86667 1.00741 1.86345 1.35754 1.19136 1.29561 1.23796 1.04826 0.98237 1.01999 1.19399 0.83941 0.83184 0.82985 1.90710 1.38119 1.46206 1.65663 1.48071 1.36154 1.13404 1.34903 1.21726 0.91832 0.93725 0.99167 1.19367 0.87329 0.97639 0.83050 1.21456 1.01199 1.39889 0.93978 0.92324 1.24938 0.98527 0.95883 0.94775 1.69939 1.33784 1.47615 1.01995 0.86431 0.83081 0.78789 0.79070 1.19766 1.20949 1.20840 1.21056 0.91890 0.99433 1.01018 0.90770 0.90532 0.90965 0.85288 0.90874 0.91038 0.91290 0.85384 0.80572 0.80751 0.86561 0.86404 0.93367 0.90424 0.92154 0.94652 0.93627 0.92728 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.06 -0.58 5.88 -104.65 -0.62 -1.19 16 3 C -0.12 -0.97 9.35 -39.55 -0.37 -1.34 16 4 C -0.07 -0.58 5.88 -104.65 -0.62 -1.19 16 5 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 6 C -0.12 -1.17 9.35 -39.41 -0.37 -1.54 16 7 C 0.12 1.48 5.86 -83.60 -0.49 0.99 16 8 N -0.40 -5.22 2.91 -60.74 -0.18 -5.40 16 9 C -0.05 -0.54 11.32 -16.19 -0.18 -0.72 16 10 C -0.01 -0.15 11.84 -17.79 -0.21 -0.36 16 11 N -0.49 -7.29 10.60 -13.38 -0.14 -7.43 16 12 C 0.19 2.86 7.81 -88.49 -0.69 2.17 16 13 S 0.06 1.02 19.78 -107.50 -2.13 -1.10 16 14 C -0.14 -2.27 4.24 36.00 0.15 -2.12 16 15 C 0.52 11.09 7.69 -10.98 -0.08 11.01 16 16 O -0.53 -13.37 15.44 5.56 0.09 -13.29 16 17 N -0.59 -12.77 2.86 -182.96 -0.52 -13.29 16 18 C 0.08 1.29 10.24 59.85 0.61 1.90 16 19 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 20 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 21 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 24 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C -0.11 -1.34 8.52 -39.41 -0.34 -1.67 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.12 1.75 8.11 -51.92 -0.42 1.33 16 40 H 0.12 1.83 7.39 -51.92 -0.38 1.44 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 43 H 0.06 0.83 6.44 -51.92 -0.33 0.49 16 44 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.14 1.70 7.58 -52.48 -0.40 1.30 16 LS Contribution 411.94 15.07 6.21 6.21 Total: -1.00 -35.07 411.94 -10.83 -45.90 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.94 Total: -0.47 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.92 Total: -2.16 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.11 Total: -52.00 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.13 Total: -1.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.07 -10.83 -45.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007056545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.951 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds