Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.96276 * 2 1 4 4 C 1.38281 * 120.12742 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.96299 * 180.02562 * 4 3 2 6 6 C 1.38122 * 120.06730 * 359.97438 * 4 3 2 7 7 C 1.38823 * 119.93691 * 0.02562 * 6 4 3 8 8 N 1.40188 * 120.06945 * 180.02562 * 7 6 4 9 9 C 1.37866 * 126.53547 * 310.16293 * 8 7 6 10 10 C 1.34399 * 106.94592 * 180.22336 * 9 8 7 11 11 N 1.34377 * 108.40410 * 359.77487 * 10 9 8 12 12 C 1.31275 * 109.36165 * 0.02562 * 11 10 9 13 13 S 1.76198 * 125.82090 * 179.97438 * 12 11 10 14 14 C 1.81008 * 99.99946 * 0.02562 * 13 12 11 15 15 C 1.50697 * 109.46759 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00521 * 359.72922 * 15 14 13 17 17 N 1.34784 * 119.99774 * 180.02562 * 15 14 13 18 18 C 1.46499 * 119.99971 * 359.72768 * 17 15 14 19 19 C 1.46499 * 119.99893 * 179.72962 * 17 15 14 20 20 C 1.50697 * 109.47293 * 90.00297 * 19 17 15 21 21 H 1.07997 * 120.00010 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00091 * 180.02562 * 20 19 17 23 23 N 1.31517 * 120.00149 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47614 * 119.99582 * 24 22 20 27 27 H 1.48497 * 109.46911 * 239.99550 * 24 22 20 28 28 C 1.38117 * 119.97154 * 180.25385 * 2 1 3 29 29 H 1.08994 * 109.47196 * 90.00135 * 1 2 3 30 30 H 1.09004 * 109.46859 * 209.99776 * 1 2 3 31 31 H 1.09001 * 109.47337 * 329.99632 * 1 2 3 32 32 H 1.07999 * 119.93597 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.46433 * 269.97531 * 5 4 3 34 34 H 1.08993 * 109.47436 * 29.97809 * 5 4 3 35 35 H 1.09002 * 109.46959 * 149.97822 * 5 4 3 36 36 H 1.08004 * 120.03207 * 180.02562 * 6 4 3 37 37 H 1.07995 * 126.52210 * 359.97438 * 9 8 7 38 38 H 1.07999 * 125.79239 * 179.77969 * 10 9 8 39 39 H 1.09001 * 109.46816 * 60.00508 * 14 13 12 40 40 H 1.08993 * 109.47387 * 300.00147 * 14 13 12 41 41 H 1.08999 * 109.47256 * 89.99766 * 18 17 15 42 42 H 1.08998 * 109.47416 * 209.99869 * 18 17 15 43 43 H 1.09008 * 109.47058 * 330.00468 * 18 17 15 44 44 H 1.08997 * 109.46865 * 210.00034 * 19 17 15 45 45 H 1.08998 * 109.47058 * 329.99547 * 19 17 15 46 46 H 0.96995 * 120.00744 * 180.02562 * 23 22 20 47 47 H 1.08009 * 120.03263 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5804 1.2020 0.0005 5 6 4.3294 2.5098 0.0011 6 6 4.2759 0.0086 0.0016 7 6 3.5853 -1.1957 0.0016 8 7 4.2884 -2.4085 0.0032 9 6 5.3191 -2.7609 -0.8419 10 6 5.6989 -4.0038 -0.4995 11 7 4.9354 -4.4128 0.5279 12 6 4.0847 -3.4639 0.8428 13 16 2.8810 -3.5426 2.1271 14 6 3.2125 -5.2030 2.7672 15 6 2.2734 -5.4981 3.9082 16 8 1.4634 -4.6659 4.2578 17 7 2.3376 -6.6848 4.5441 18 6 3.3163 -7.6899 4.1222 19 6 1.4287 -6.9694 5.6572 20 6 0.1700 -7.6068 5.1276 21 1 0.0581 -7.7819 4.0678 22 6 -0.8392 -7.9654 5.9959 23 7 -0.7032 -7.7517 7.2864 24 14 -2.3997 -8.7547 5.3394 25 1 -2.3055 -8.8845 3.8631 26 1 -2.5667 -10.1001 5.9452 27 1 -3.5678 -7.9066 5.6878 28 6 2.1970 -1.1965 -0.0053 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6560 2.1323 0.0004 33 1 4.5106 2.8250 -1.0264 34 1 3.7373 3.2673 0.5145 35 1 5.2819 2.3827 0.5156 36 1 5.3559 0.0124 0.0024 37 1 5.7383 -2.1551 -1.6315 38 1 6.4844 -4.5764 -0.9701 39 1 4.2420 -5.2571 3.1212 40 1 3.0621 -5.9350 1.9737 41 1 4.2441 -7.5488 4.6767 42 1 2.9223 -8.6866 4.3209 43 1 3.5109 -7.5820 3.0551 44 1 1.9135 -7.6497 6.3573 45 1 1.1780 -6.0399 6.1684 46 1 -1.4129 -8.0043 7.8974 47 1 1.6570 -2.1319 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007056545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = 34.400383 kcal Electronic energy + Delta-G solvation = -28468.197641 eV Core-core repulsion = 24549.536209 eV Total energy + Delta-G solvation = -3918.661431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.15288 -40.69400 -40.46161 -36.71311 -35.56446 -34.79144 -34.59254 -31.85285 -31.21325 -30.55663 -29.21039 -28.20558 -27.78900 -27.32162 -24.87781 -24.48134 -22.77288 -22.18828 -21.48941 -20.26973 -19.13246 -18.73347 -18.01615 -17.58041 -17.22585 -17.20940 -16.83277 -16.72225 -16.07372 -15.86485 -15.32078 -15.10838 -14.90134 -14.72510 -14.65022 -14.38887 -14.29314 -14.08976 -14.01903 -13.87779 -13.61933 -13.48191 -13.39557 -13.14542 -12.98510 -12.82442 -12.75232 -12.57407 -12.54189 -12.23584 -12.17440 -11.72603 -11.68213 -11.36506 -11.16793 -10.88455 -10.65938 -10.51711 -9.70402 -9.63215 -9.53125 -8.53040 -8.24173 -6.38706 -0.15283 0.00015 0.21153 0.90317 0.97175 1.36062 1.38377 1.50035 1.60359 1.72079 1.93076 2.24286 2.40941 2.51452 3.05771 3.46786 3.66160 3.70654 3.73681 3.94271 4.00130 4.19390 4.20402 4.21783 4.28491 4.37612 4.41445 4.47400 4.59703 4.67730 4.72504 4.76223 4.83558 4.86559 4.91603 4.93434 4.96254 5.10681 5.19205 5.27389 5.28328 5.39438 5.50247 5.50766 5.61713 5.72712 5.76740 6.02644 6.07360 6.55493 6.70265 6.73511 7.16650 7.34273 8.83486 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.002425 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.855749 B =11542.402130 C =12952.677908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.114 4.114 4 C -0.066 4.066 5 C -0.112 4.112 6 C -0.123 4.123 7 C 0.101 3.899 8 N -0.401 5.401 9 C -0.035 4.035 10 C -0.029 4.029 11 N -0.506 5.506 12 C 0.165 3.835 13 S 0.030 5.970 14 C -0.115 4.115 15 C 0.514 3.486 16 O -0.579 6.579 17 N -0.600 5.600 18 C 0.075 3.925 19 C 0.259 3.741 20 C -0.543 4.543 21 H 0.053 0.947 22 C 0.008 3.992 23 N -0.927 5.927 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.268 1.268 27 H -0.281 1.281 28 C -0.136 4.136 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.214 0.786 38 H 0.205 0.795 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.002 0.998 46 H 0.268 0.732 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.827 18.157 -20.998 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.067 4.067 5 C -0.168 4.168 6 C -0.143 4.143 7 C 0.011 3.989 8 N -0.083 5.083 9 C -0.167 4.167 10 C -0.177 4.177 11 N -0.228 5.228 12 C -0.204 4.204 13 S 0.259 5.741 14 C -0.266 4.266 15 C 0.301 3.699 16 O -0.460 6.460 17 N -0.331 5.331 18 C -0.068 4.068 19 C 0.138 3.862 20 C -0.581 4.581 21 H 0.071 0.929 22 C -0.191 4.191 23 N -0.567 5.567 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.193 1.193 27 H -0.207 1.207 28 C -0.156 4.156 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.159 0.841 37 H 0.231 0.769 38 H 0.222 0.778 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.048 0.952 45 H 0.020 0.980 46 H 0.077 0.923 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.548 18.618 -19.868 29.981 hybrid contribution 0.005 -1.128 -0.581 1.269 sum 12.553 17.490 -20.449 29.693 Atomic orbital electron populations 1.20892 0.89197 1.03781 1.03574 1.20059 0.97539 0.91978 0.97312 1.21415 0.93768 0.98322 0.99710 1.20147 0.93974 0.95602 0.96971 1.20872 1.00072 0.92069 1.03808 1.21065 1.00735 0.89987 1.02480 1.17897 0.91223 0.84002 1.05785 1.43104 1.27709 1.11658 1.25793 1.23535 0.93544 0.99602 1.00049 1.22911 1.02699 0.95051 0.97031 1.70777 1.07860 1.27124 1.17071 1.25548 1.05148 0.88105 1.01588 1.86424 1.37483 1.19074 1.31088 1.23530 1.04073 0.98839 1.00183 1.20108 0.83923 0.82347 0.83536 1.90678 1.40337 1.47732 1.67254 1.48071 1.36329 1.14819 1.33856 1.22018 0.91335 0.92026 1.01371 1.18859 0.87968 0.95012 0.84356 1.21697 1.02420 1.40244 0.93774 0.92873 1.25850 1.01930 0.96306 0.95002 1.70049 1.35048 1.48372 1.03217 0.85361 0.78517 0.78277 0.78625 1.19227 1.19305 1.20653 1.21045 0.92258 0.99460 1.02875 0.89424 0.92232 0.89369 0.82604 0.89298 0.89869 0.90806 0.84071 0.76909 0.77832 0.84642 0.85040 0.90679 0.90751 0.89226 0.95171 0.97972 0.92315 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 10.01 71.24 0.71 -1.15 16 2 C -0.07 -1.32 5.88 -19.88 -0.12 -1.43 16 3 C -0.11 -1.71 9.35 22.29 0.21 -1.50 16 4 C -0.07 -0.96 5.88 -19.88 -0.12 -1.08 16 5 C -0.11 -0.88 10.01 71.24 0.71 -0.16 16 6 C -0.12 -2.21 9.35 22.38 0.21 -2.00 16 7 C 0.10 2.37 5.86 38.09 0.22 2.59 16 8 N -0.40 -10.14 2.91 -346.08 -1.01 -11.14 16 9 C -0.03 -0.68 11.32 82.87 0.94 0.26 16 10 C -0.03 -0.62 11.84 83.43 0.99 0.37 16 11 N -0.51 -14.59 10.60 -196.24 -2.08 -16.67 16 12 C 0.16 4.96 7.81 179.60 1.40 6.36 16 13 S 0.03 1.01 19.78 -56.49 -1.12 -0.11 16 14 C -0.11 -3.83 4.24 71.24 0.30 -3.53 16 15 C 0.51 22.61 7.69 87.65 0.67 23.28 16 16 O -0.58 -30.91 15.44 -3.04 -0.05 -30.95 16 17 N -0.60 -26.36 2.86 -851.13 -2.43 -28.79 16 18 C 0.07 2.33 10.24 127.77 1.31 3.64 16 19 C 0.26 14.21 5.16 85.63 0.44 14.65 16 20 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 21 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 22 C 0.01 0.48 5.46 84.65 0.46 0.94 16 23 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 24 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 C -0.14 -3.31 8.52 22.38 0.19 -3.12 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16 31 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 35 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.14 3.96 8.11 -2.39 -0.02 3.94 16 40 H 0.13 4.00 7.39 -2.40 -0.02 3.98 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 43 H 0.09 2.28 6.44 -2.38 -0.02 2.26 16 44 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 45 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 46 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.12 3.17 7.58 -2.91 -0.02 3.15 16 Total: -1.00 -79.87 411.94 5.38 -74.49 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.97 Total: 15.21 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 8.78 Total: 6.66 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -5.24 Total: -112.76 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.05 Total: -30.95 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -1.12 Total: -0.11 kcal Total: -79.87 5.38 -74.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007056545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.891 kcal (2) G-P(sol) polarization free energy of solvation -79.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds