Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47226 * 2 1 4 4 C 1.53000 * 110.53380 * 177.87241 * 3 2 1 5 5 C 1.53000 * 109.46823 * 187.12764 * 4 3 2 6 6 N 1.47308 * 110.59638 * 54.87261 * 3 2 1 7 7 C 1.34529 * 106.61738 * 241.47323 * 6 3 2 8 8 O 1.21539 * 123.77211 * 180.02562 * 7 6 3 9 9 N 1.33794 * 112.45850 * 359.74942 * 7 6 3 10 10 C 1.46500 * 124.18087 * 180.30583 * 9 7 6 11 11 C 1.50699 * 109.47196 * 270.15069 * 10 9 7 12 12 O 1.21286 * 119.99901 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00173 * 179.97438 * 11 10 9 14 14 C 1.39242 * 120.00057 * 175.70621 * 13 11 10 15 15 C 1.39476 * 119.83097 * 215.01082 * 14 13 11 16 16 C 1.36382 * 120.16519 * 179.71580 * 15 14 13 17 17 C 1.40865 * 119.82579 * 0.58299 * 16 15 14 18 18 C 1.41152 * 120.16344 * 179.67583 * 17 16 15 19 19 H 1.07999 * 120.00065 * 214.80461 * 18 17 16 20 20 C 1.39909 * 120.00174 * 34.79941 * 18 17 16 21 21 N 1.30876 * 119.99721 * 355.55871 * 20 18 17 22 22 Si 1.86801 * 119.99968 * 175.56237 * 20 18 17 23 23 H 1.48497 * 109.47136 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47102 * 120.00206 * 22 20 18 25 25 H 1.48497 * 109.46756 * 239.99866 * 22 20 18 26 26 C 1.40868 * 119.67759 * 359.69753 * 17 16 15 27 27 C 1.36378 * 119.82411 * 359.97438 * 26 17 16 28 28 C 1.34765 * 111.64181 * 0.44096 * 9 7 6 29 29 O 1.21235 * 127.15516 * 179.85751 * 28 9 7 30 30 H 1.08999 * 109.46848 * 300.00451 * 1 2 3 31 31 H 1.09000 * 109.46588 * 60.00360 * 1 2 3 32 32 H 1.09005 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47309 * 239.99819 * 2 1 3 34 34 H 1.09002 * 109.46951 * 120.00322 * 2 1 3 35 35 H 1.09005 * 109.47040 * 307.12443 * 4 3 2 36 36 H 1.08995 * 109.47426 * 67.12747 * 4 3 2 37 37 H 1.09001 * 109.47207 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.47306 * 300.00044 * 5 4 3 39 39 H 1.09004 * 109.47105 * 59.99953 * 5 4 3 40 40 H 0.96994 * 126.69616 * 61.50016 * 6 3 2 41 41 H 1.09001 * 109.46841 * 30.14871 * 10 9 7 42 42 H 1.08998 * 109.47165 * 150.14761 * 10 9 7 43 43 H 0.97004 * 119.99930 * 355.70727 * 13 11 10 44 44 H 1.08002 * 119.91903 * 0.02562 * 15 14 13 45 45 H 1.08004 * 120.08272 * 180.25675 * 16 15 14 46 46 H 0.96999 * 119.99934 * 179.97438 * 21 20 18 47 47 H 1.07993 * 120.09077 * 179.97438 * 26 17 16 48 48 H 1.08005 * 119.91533 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5689 1.4712 0.0532 5 6 4.0460 2.9140 0.2311 6 7 1.4648 2.1956 1.1278 7 6 0.7508 3.2028 0.5935 8 8 0.1408 4.0222 1.2521 9 7 0.7920 3.2053 -0.7438 10 6 0.1111 4.1916 -1.5864 11 6 -1.2775 3.7033 -1.9093 12 8 -1.6605 2.6362 -1.4785 13 7 -2.0937 4.4523 -2.6769 14 6 -3.3427 3.9622 -3.0494 15 6 -3.8650 4.2758 -4.3041 16 6 -5.0851 3.7947 -4.6782 17 6 -5.8234 2.9894 -3.7890 18 6 -7.0899 2.4934 -4.1662 19 1 -7.8708 2.3889 -3.4276 20 6 -7.3337 2.1371 -5.4971 21 7 -6.4175 2.3448 -6.4083 22 14 -8.9667 1.3653 -5.9732 23 1 -9.8247 1.2390 -4.7678 24 1 -9.6464 2.2241 -6.9762 25 1 -8.7275 0.0199 -6.5545 26 6 -5.2918 2.6819 -2.5212 27 6 -4.0675 3.1647 -2.1638 28 6 1.5348 2.1867 -1.2201 29 8 1.7571 1.9236 -2.3824 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.9146 0.8680 0.8928 36 1 3.9724 1.0670 -0.8751 37 1 5.1351 2.9344 0.2695 38 1 3.7002 3.5172 -0.6083 39 1 3.6424 3.3182 1.1596 40 1 1.5788 2.0031 2.0716 41 1 0.0479 5.1413 -1.0552 42 1 0.6722 4.3289 -2.5107 43 1 -1.8111 5.3328 -2.9698 44 1 -3.2997 4.8970 -4.9830 45 1 -5.4864 4.0349 -5.6517 46 1 -6.5863 2.0975 -7.3310 47 1 -5.8523 2.0655 -1.8341 48 1 -3.6583 2.9295 -1.1923 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007062486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = -55.666729 kcal Electronic energy + Delta-G solvation = -32749.199788 eV Core-core repulsion = 28383.879883 eV Total energy + Delta-G solvation = -4365.319906 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.92264 -39.67973 -38.76457 -37.49237 -36.99548 -35.46485 -34.44044 -32.99506 -32.69348 -32.54865 -29.78254 -29.45840 -28.25435 -27.10427 -24.92523 -23.94007 -22.47386 -22.43813 -21.47332 -20.84438 -20.42652 -19.71609 -18.12278 -17.72068 -17.28228 -16.86849 -16.32306 -16.22002 -15.98347 -15.51358 -15.12610 -14.89575 -14.82893 -14.55783 -14.20351 -14.00491 -13.92578 -13.69532 -13.54478 -13.18114 -13.14726 -12.67515 -12.35485 -12.14244 -12.09159 -11.86657 -11.72088 -11.68689 -11.44968 -11.38062 -11.25234 -11.16567 -10.96691 -10.89146 -10.74468 -10.42314 -10.25946 -9.94031 -9.67002 -9.48308 -9.43974 -9.09235 -8.88527 -7.54774 -6.87595 -6.61979 -4.34486 1.50743 1.93304 2.49116 2.84028 2.90910 2.97550 3.08920 3.10306 3.15639 3.29912 3.62072 3.73239 3.98349 4.00527 4.33091 4.68078 4.70957 4.75484 4.88078 4.90984 4.97260 5.02023 5.03595 5.25392 5.29779 5.41230 5.43198 5.45629 5.57440 5.65508 5.74657 5.77604 5.89765 6.18973 6.27807 6.44288 6.57306 6.72716 6.86847 6.90026 7.06305 7.19005 7.22880 7.29218 7.63760 7.71286 7.84251 7.98125 8.06234 8.22365 8.31155 8.59678 8.68545 8.92832 8.99179 10.29114 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.002285 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.974484 B =12249.649530 C =12595.644410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C 0.124 3.876 4 C -0.117 4.117 5 C -0.158 4.158 6 N -0.717 5.717 7 C 0.713 3.287 8 O -0.541 6.541 9 N -0.558 5.558 10 C 0.099 3.901 11 C 0.486 3.514 12 O -0.518 6.518 13 N -0.645 5.645 14 C 0.003 3.997 15 C -0.119 4.119 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.811 5.811 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.206 4.206 27 C -0.083 4.083 28 C 0.540 3.460 29 O -0.461 6.461 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.438 0.562 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.397 0.603 44 H 0.092 0.908 45 H 0.133 0.867 46 H 0.277 0.723 47 H 0.095 0.905 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.720 0.436 10.641 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.154 4.154 3 C 0.033 3.967 4 C -0.156 4.156 5 C -0.215 4.215 6 N -0.381 5.381 7 C 0.413 3.587 8 O -0.414 6.414 9 N -0.304 5.304 10 C -0.027 4.027 11 C 0.270 3.730 12 O -0.394 6.394 13 N -0.288 5.288 14 C -0.089 4.089 15 C -0.139 4.139 16 C -0.162 4.162 17 C 0.098 3.902 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.740 3.260 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.226 4.226 27 C -0.103 4.103 28 C 0.327 3.673 29 O -0.329 6.329 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.282 0.718 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.231 0.769 44 H 0.110 0.890 45 H 0.150 0.850 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.249 -0.004 10.328 22.730 hybrid contribution -0.537 -0.088 -0.152 0.565 sum 19.712 -0.092 10.176 22.183 Atomic orbital electron populations 1.21856 0.93625 1.02764 1.03638 1.21778 0.97899 0.91602 1.04126 1.21620 0.96026 0.94418 0.84612 1.21773 0.90276 0.99003 1.04534 1.21823 1.01799 0.95581 1.02311 1.45502 1.53590 1.30044 1.08940 1.15692 0.79429 0.82183 0.81353 1.91019 1.46148 1.41269 1.63001 1.45801 1.47494 1.29317 1.07753 1.21478 0.92360 0.92127 0.96709 1.20592 0.86541 0.85476 0.80358 1.90694 1.75260 1.22238 1.51179 1.42849 1.16128 1.18791 1.51065 1.17237 0.86306 1.09667 0.95712 1.20311 0.97762 1.02648 0.93149 1.21195 0.94709 0.98757 1.01515 1.17736 0.93141 0.88648 0.90674 1.19539 0.97919 1.37772 0.93832 0.90557 1.25890 0.98025 0.94544 0.96146 1.69772 1.33351 1.38047 1.02671 0.86145 0.81565 0.79080 0.79182 1.18588 1.19987 1.19985 1.20804 0.96271 1.06115 0.99392 1.20383 0.94054 0.98067 0.97764 1.20667 0.76926 0.79630 0.90126 1.90804 1.57022 1.67246 1.17875 0.92246 0.91283 0.91771 0.89406 0.89859 0.89547 0.89209 0.91520 0.92966 0.91935 0.71784 0.85849 0.85979 0.76921 0.88997 0.84987 0.91189 0.88634 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.38 37.16 0.35 -1.60 16 2 C -0.12 -0.98 5.35 -26.73 -0.14 -1.13 16 3 C 0.12 1.11 0.86 -132.09 -0.11 0.99 16 4 C -0.12 -0.71 5.34 -26.73 -0.14 -0.85 16 5 C -0.16 -1.00 9.37 37.16 0.35 -0.65 16 6 N -0.72 -6.49 3.96 -52.94 -0.21 -6.70 16 7 C 0.71 9.35 8.41 -88.02 -0.74 8.61 16 8 O -0.54 -8.86 17.48 5.33 0.09 -8.76 16 9 N -0.56 -7.33 2.09 -122.02 -0.26 -7.59 16 10 C 0.10 1.24 6.18 -5.19 -0.03 1.21 16 11 C 0.49 8.49 7.73 -10.99 -0.08 8.40 16 12 O -0.52 -11.06 13.16 5.55 0.07 -10.99 16 13 N -0.64 -11.20 5.30 -9.74 -0.05 -11.25 16 14 C 0.00 0.06 6.31 -83.57 -0.53 -0.46 16 15 C -0.12 -2.71 9.90 -39.79 -0.39 -3.10 16 16 C -0.14 -3.67 8.61 -39.26 -0.34 -4.00 16 17 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 18 C -0.46 -12.38 9.02 -37.85 -0.34 -12.72 16 19 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 20 C 0.07 1.76 5.42 -17.33 -0.09 1.66 16 21 N -0.81 -21.25 10.60 55.55 0.59 -20.66 16 22 Si 0.92 19.18 29.56 -169.99 -5.03 14.15 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 27 C -0.08 -2.01 8.61 -39.79 -0.34 -2.36 16 28 C 0.54 6.87 4.79 -10.56 -0.05 6.82 16 29 O -0.46 -7.02 17.76 5.60 0.10 -6.92 16 30 H 0.06 0.74 7.53 -51.93 -0.39 0.35 16 31 H 0.07 1.11 6.56 -51.93 -0.34 0.77 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 0.41 7.42 -51.93 -0.39 0.02 16 39 H 0.06 0.40 7.43 -51.93 -0.39 0.02 16 40 H 0.44 2.80 8.96 -40.82 -0.37 2.43 16 41 H 0.12 1.27 7.86 -51.93 -0.41 0.86 16 42 H 0.12 1.24 8.00 -51.93 -0.42 0.82 16 43 H 0.40 5.18 8.82 -40.82 -0.36 4.82 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.13 3.52 6.13 -52.48 -0.32 3.20 16 46 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 47 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 48 H 0.11 2.59 6.22 -52.48 -0.33 2.27 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -34.70 397.86 -8.94 -43.64 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.63 Total: 11.80 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.62 Total: -2.73 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.07 Total: -46.20 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.27 Total: -26.67 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.70 -8.94 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007062486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.022 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds