Wall clock time and date at job start Tue Mar 31 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47226 * 2 1 4 4 C 1.53000 * 110.53380 * 177.87241 * 3 2 1 5 5 C 1.53000 * 109.46823 * 187.12764 * 4 3 2 6 6 N 1.47308 * 110.59638 * 54.87261 * 3 2 1 7 7 C 1.34529 * 106.61738 * 241.47323 * 6 3 2 8 8 O 1.21539 * 123.77211 * 180.02562 * 7 6 3 9 9 N 1.33794 * 112.45850 * 359.74942 * 7 6 3 10 10 C 1.46500 * 124.18087 * 180.30583 * 9 7 6 11 11 C 1.50699 * 109.47196 * 270.15069 * 10 9 7 12 12 O 1.21286 * 119.99901 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00173 * 179.97438 * 11 10 9 14 14 C 1.39242 * 120.00057 * 175.70621 * 13 11 10 15 15 C 1.39476 * 119.83097 * 215.01082 * 14 13 11 16 16 C 1.36382 * 120.16519 * 179.71580 * 15 14 13 17 17 C 1.40865 * 119.82579 * 0.58299 * 16 15 14 18 18 C 1.41152 * 120.16344 * 179.67583 * 17 16 15 19 19 H 1.07999 * 120.00065 * 214.80461 * 18 17 16 20 20 C 1.39909 * 120.00174 * 34.79941 * 18 17 16 21 21 N 1.30876 * 119.99721 * 355.55871 * 20 18 17 22 22 Si 1.86801 * 119.99968 * 175.56237 * 20 18 17 23 23 H 1.48497 * 109.47136 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47102 * 120.00206 * 22 20 18 25 25 H 1.48497 * 109.46756 * 239.99866 * 22 20 18 26 26 C 1.40868 * 119.67759 * 359.69753 * 17 16 15 27 27 C 1.36378 * 119.82411 * 359.97438 * 26 17 16 28 28 C 1.34765 * 111.64181 * 0.44096 * 9 7 6 29 29 O 1.21235 * 127.15516 * 179.85751 * 28 9 7 30 30 H 1.08999 * 109.46848 * 300.00451 * 1 2 3 31 31 H 1.09000 * 109.46588 * 60.00360 * 1 2 3 32 32 H 1.09005 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47309 * 239.99819 * 2 1 3 34 34 H 1.09002 * 109.46951 * 120.00322 * 2 1 3 35 35 H 1.09005 * 109.47040 * 307.12443 * 4 3 2 36 36 H 1.08995 * 109.47426 * 67.12747 * 4 3 2 37 37 H 1.09001 * 109.47207 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.47306 * 300.00044 * 5 4 3 39 39 H 1.09004 * 109.47105 * 59.99953 * 5 4 3 40 40 H 0.96994 * 126.69616 * 61.50016 * 6 3 2 41 41 H 1.09001 * 109.46841 * 30.14871 * 10 9 7 42 42 H 1.08998 * 109.47165 * 150.14761 * 10 9 7 43 43 H 0.97004 * 119.99930 * 355.70727 * 13 11 10 44 44 H 1.08002 * 119.91903 * 0.02562 * 15 14 13 45 45 H 1.08004 * 120.08272 * 180.25675 * 16 15 14 46 46 H 0.96999 * 119.99934 * 179.97438 * 21 20 18 47 47 H 1.07993 * 120.09077 * 179.97438 * 26 17 16 48 48 H 1.08005 * 119.91533 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5689 1.4712 0.0532 5 6 4.0460 2.9140 0.2311 6 7 1.4648 2.1956 1.1278 7 6 0.7508 3.2028 0.5935 8 8 0.1408 4.0222 1.2521 9 7 0.7920 3.2053 -0.7438 10 6 0.1111 4.1916 -1.5864 11 6 -1.2775 3.7033 -1.9093 12 8 -1.6605 2.6362 -1.4785 13 7 -2.0937 4.4523 -2.6769 14 6 -3.3427 3.9622 -3.0494 15 6 -3.8650 4.2758 -4.3041 16 6 -5.0851 3.7947 -4.6782 17 6 -5.8234 2.9894 -3.7890 18 6 -7.0899 2.4934 -4.1662 19 1 -7.8708 2.3889 -3.4276 20 6 -7.3337 2.1371 -5.4971 21 7 -6.4175 2.3448 -6.4083 22 14 -8.9667 1.3653 -5.9732 23 1 -9.8247 1.2390 -4.7678 24 1 -9.6464 2.2241 -6.9762 25 1 -8.7275 0.0199 -6.5545 26 6 -5.2918 2.6819 -2.5212 27 6 -4.0675 3.1647 -2.1638 28 6 1.5348 2.1867 -1.2201 29 8 1.7571 1.9236 -2.3824 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.9146 0.8680 0.8928 36 1 3.9724 1.0670 -0.8751 37 1 5.1351 2.9344 0.2695 38 1 3.7002 3.5172 -0.6083 39 1 3.6424 3.3182 1.1596 40 1 1.5788 2.0031 2.0716 41 1 0.0479 5.1413 -1.0552 42 1 0.6722 4.3289 -2.5107 43 1 -1.8111 5.3328 -2.9698 44 1 -3.2997 4.8970 -4.9830 45 1 -5.4864 4.0349 -5.6517 46 1 -6.5863 2.0975 -7.3310 47 1 -5.8523 2.0655 -1.8341 48 1 -3.6583 2.9295 -1.1923 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007062486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:34 Heat of formation + Delta-G solvation = -78.716887 kcal Electronic energy + Delta-G solvation = -32750.199318 eV Core-core repulsion = 28383.879883 eV Total energy + Delta-G solvation = -4366.319435 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.86335 -41.21894 -39.81645 -39.16438 -38.06140 -36.59318 -36.12426 -34.78163 -33.46139 -33.30438 -31.56705 -31.19747 -29.69401 -27.91876 -26.71288 -24.89608 -23.84386 -23.13272 -23.07679 -22.37372 -21.52654 -21.12416 -19.34304 -19.12561 -18.82642 -18.26560 -17.48721 -17.32190 -17.08515 -16.89255 -16.56442 -16.33407 -15.73483 -15.68266 -15.50922 -15.06506 -15.00021 -14.84875 -14.74824 -14.54613 -14.45225 -14.06914 -13.82191 -13.67050 -13.42710 -13.28572 -12.88300 -12.76417 -12.74413 -12.67434 -12.51723 -12.48095 -12.18070 -11.93343 -11.87502 -11.83124 -11.53241 -11.41054 -11.24537 -11.20454 -10.78754 -10.60124 -10.40885 -9.50418 -8.77717 -8.53223 -6.36225 0.53317 0.72933 0.98626 1.09991 1.37944 1.39716 1.52965 1.66566 1.81534 2.10137 2.22293 2.35611 2.77424 2.82117 3.31601 3.59019 3.65932 3.69109 3.81424 4.07057 4.18072 4.22950 4.27772 4.29650 4.37188 4.37910 4.47981 4.53196 4.68328 4.76319 4.89113 4.92603 5.00216 5.03387 5.08828 5.09627 5.11237 5.27273 5.29423 5.30226 5.39614 5.65962 5.78350 5.86022 5.92223 5.97785 6.09773 6.28407 6.35368 6.59238 6.65422 6.93764 6.95887 7.05171 7.26448 8.39813 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.002285 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.974484 B =12249.649530 C =12595.644410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 C 0.130 3.870 4 C -0.110 4.110 5 C -0.158 4.158 6 N -0.695 5.695 7 C 0.708 3.292 8 O -0.579 6.579 9 N -0.565 5.565 10 C 0.103 3.897 11 C 0.481 3.519 12 O -0.559 6.559 13 N -0.637 5.637 14 C 0.020 3.980 15 C -0.115 4.115 16 C -0.159 4.159 17 C 0.069 3.931 18 C -0.497 4.497 19 H 0.072 0.928 20 C 0.027 3.973 21 N -0.840 5.840 22 Si 0.989 3.011 23 H -0.261 1.261 24 H -0.261 1.261 25 H -0.269 1.269 26 C -0.223 4.223 27 C -0.094 4.094 28 C 0.531 3.469 29 O -0.492 6.492 30 H 0.050 0.950 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.452 0.548 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.421 0.579 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.285 0.715 47 H 0.093 0.907 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.254 0.139 11.235 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.148 4.148 3 C 0.040 3.960 4 C -0.148 4.148 5 C -0.216 4.216 6 N -0.360 5.360 7 C 0.409 3.591 8 O -0.455 6.455 9 N -0.310 5.310 10 C -0.022 4.022 11 C 0.268 3.732 12 O -0.438 6.438 13 N -0.283 5.283 14 C -0.073 4.073 15 C -0.135 4.135 16 C -0.179 4.179 17 C 0.066 3.934 18 C -0.527 4.527 19 H 0.090 0.910 20 C -0.185 4.185 21 N -0.468 5.468 22 Si 0.810 3.190 23 H -0.185 1.185 24 H -0.186 1.186 25 H -0.194 1.194 26 C -0.243 4.243 27 C -0.114 4.114 28 C 0.320 3.680 29 O -0.363 6.363 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.300 0.700 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.259 0.741 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.096 0.904 47 H 0.111 0.889 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 22.847 -0.283 10.948 25.337 hybrid contribution -1.188 0.027 -0.273 1.220 sum 21.659 -0.256 10.675 24.148 Atomic orbital electron populations 1.21803 0.96581 1.02377 1.00892 1.21831 0.94966 0.91536 1.06429 1.21793 0.98036 0.93809 0.82396 1.21840 0.87256 0.99488 1.06246 1.21839 1.02950 0.95399 1.01384 1.45431 1.52160 1.28546 1.09821 1.15868 0.79469 0.82571 0.81235 1.90991 1.47934 1.42957 1.63650 1.45961 1.47338 1.29669 1.07997 1.21604 0.89271 0.92837 0.98528 1.21519 0.88117 0.84745 0.78863 1.90689 1.76447 1.24155 1.52474 1.42754 1.14456 1.20032 1.51071 1.17284 0.87598 1.07592 0.94857 1.20574 0.96966 1.02270 0.93715 1.21195 0.96080 0.99569 1.01095 1.18040 0.94076 0.89772 0.91473 1.19743 0.98194 1.39825 0.94963 0.91024 1.26756 1.01767 0.94482 0.95481 1.69828 1.35133 1.38595 1.03228 0.85047 0.76800 0.78244 0.78891 1.18470 1.18579 1.19384 1.20910 0.97105 1.06851 0.99404 1.20451 0.93898 0.98939 0.98150 1.21376 0.76323 0.79458 0.90863 1.90778 1.58204 1.67943 1.19360 0.93053 0.95853 0.91065 0.88919 0.85655 0.86016 0.88887 0.89777 0.94884 0.92046 0.70042 0.83143 0.83123 0.74069 0.85410 0.86146 0.90416 0.88868 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.38 71.98 0.68 -3.10 16 2 C -0.11 -1.58 5.35 30.60 0.16 -1.42 16 3 C 0.13 2.02 0.86 2.99 0.00 2.02 16 4 C -0.11 -0.94 5.34 30.59 0.16 -0.77 16 5 C -0.16 -1.55 9.37 71.98 0.67 -0.88 16 6 N -0.69 -11.21 3.96 -439.81 -1.74 -12.95 16 7 C 0.71 17.93 8.41 179.44 1.51 19.44 16 8 O -0.58 -18.70 17.48 -3.84 -0.07 -18.77 16 9 N -0.57 -14.35 2.09 -777.22 -1.63 -15.97 16 10 C 0.10 2.44 6.18 85.63 0.53 2.97 16 11 C 0.48 16.60 7.73 87.66 0.68 17.27 16 12 O -0.56 -24.46 13.16 -3.05 -0.04 -24.50 16 13 N -0.64 -21.44 5.30 -303.11 -1.61 -23.05 16 14 C 0.02 0.90 6.31 38.56 0.24 1.14 16 15 C -0.12 -5.24 9.90 22.14 0.22 -5.02 16 16 C -0.16 -8.47 8.61 22.48 0.19 -8.27 16 17 C 0.07 3.89 5.55 -21.28 -0.12 3.77 16 18 C -0.50 -27.89 9.02 23.39 0.21 -27.68 16 19 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 20 C 0.03 1.41 5.42 85.24 0.46 1.87 16 21 N -0.84 -44.96 10.60 21.82 0.23 -44.73 16 22 Si 0.99 39.85 29.56 68.60 2.03 41.87 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 26 C -0.22 -12.04 9.74 22.48 0.22 -11.82 16 27 C -0.09 -4.74 8.61 22.14 0.19 -4.55 16 28 C 0.53 13.00 4.79 87.94 0.42 13.42 16 29 O -0.49 -14.72 17.76 -2.89 -0.05 -14.77 16 30 H 0.05 1.26 7.53 -2.39 -0.02 1.25 16 31 H 0.02 0.76 6.56 -2.39 -0.02 0.74 16 32 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.03 0.45 7.42 -2.39 -0.02 0.43 16 39 H 0.06 0.62 7.43 -2.38 -0.02 0.60 16 40 H 0.45 4.58 8.96 -92.71 -0.83 3.75 16 41 H 0.15 2.78 7.86 -2.39 -0.02 2.76 16 42 H 0.15 2.73 8.00 -2.39 -0.02 2.71 16 43 H 0.42 10.04 8.82 -92.71 -0.82 9.22 16 44 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 45 H 0.12 6.63 6.13 -2.91 -0.02 6.61 16 46 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 47 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 48 H 0.10 5.17 6.22 -2.91 -0.02 5.15 16 Total: -1.00 -81.02 397.86 2.94 -78.09 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.63 Total: 36.38 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.44 Total: -1.60 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -4.74 Total: -96.70 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.16 Total: -58.04 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.87 kcal Total: -81.02 2.94 -78.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007062486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.631 kcal (2) G-P(sol) polarization free energy of solvation -81.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds