Wall clock time and date at job start Tue Mar 31 2020 06:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50701 * 109.46775 * 2 1 4 4 C 1.38147 * 120.03464 * 265.30100 * 3 2 1 5 5 C 1.38256 * 120.06430 * 180.27975 * 4 3 2 6 6 C 1.38305 * 120.13051 * 359.69782 * 5 4 3 7 7 C 1.38100 * 120.06397 * 0.02562 * 6 5 4 8 8 C 1.38798 * 120.03153 * 85.00714 * 3 2 1 9 9 N 1.40230 * 120.06482 * 0.02562 * 8 3 2 10 10 C 1.37498 * 127.21111 * 269.70206 * 9 8 3 11 11 S 1.76204 * 126.46357 * 359.96199 * 10 9 8 12 12 C 1.76198 * 99.99829 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.38545 * 119.99701 * 179.97438 * 12 11 10 15 15 N 1.31729 * 120.00190 * 359.72864 * 14 12 11 16 16 Si 1.86795 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47317 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47320 * 120.00413 * 16 14 12 19 19 H 1.48507 * 109.47345 * 239.99967 * 16 14 12 20 20 N 1.31230 * 107.07383 * 180.22416 * 10 9 8 21 21 N 1.28504 * 110.05257 * 359.62244 * 20 10 9 22 22 C 1.31248 * 110.11634 * 0.38637 * 21 20 10 23 23 N 1.38551 * 126.40964 * 179.74323 * 22 21 20 24 24 C 1.47016 * 111.00107 * 123.66161 * 23 22 21 25 25 C 1.53095 * 109.25922 * 177.60467 * 24 23 22 26 26 O 1.43014 * 109.25509 * 56.85486 * 25 24 23 27 27 C 1.43016 * 113.74140 * 301.32409 * 26 25 24 28 28 C 1.47016 * 111.00354 * 0.02847 * 23 22 21 29 29 H 1.09000 * 109.47117 * 59.99525 * 1 2 3 30 30 H 1.08994 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46592 * 299.99592 * 1 2 3 32 32 H 1.09000 * 109.46585 * 240.00879 * 2 1 3 33 33 H 1.08991 * 109.47372 * 120.00484 * 2 1 3 34 34 H 1.07997 * 119.96880 * 359.97438 * 4 3 2 35 35 H 1.07991 * 119.93958 * 179.72073 * 5 4 3 36 36 H 1.07994 * 119.97188 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.03414 * 180.02562 * 7 6 5 38 38 H 0.96990 * 119.99828 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.50552 * 297.54583 * 24 23 22 40 40 H 1.09006 * 109.50186 * 57.67663 * 24 23 22 41 41 H 1.08996 * 109.51283 * 296.91507 * 25 24 23 42 42 H 1.09006 * 109.53851 * 176.80531 * 25 24 23 43 43 H 1.09000 * 109.50372 * 298.74312 * 27 26 25 44 44 H 1.08996 * 109.54659 * 178.62833 * 27 26 25 45 45 H 1.09002 * 109.50354 * 302.32970 * 28 23 22 46 46 H 1.09003 * 109.50374 * 62.45216 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3552 2.0401 -1.1920 5 6 2.8215 3.3417 -1.1922 6 6 2.9603 4.0296 -0.0004 7 6 2.6337 3.4177 1.1937 8 6 2.1653 2.1107 1.1971 9 7 1.8330 1.4866 2.4081 10 6 0.6087 1.4845 3.0340 11 16 -0.8600 2.2738 2.4643 12 6 -1.9674 1.8324 3.7617 13 1 -1.6190 1.2300 4.5876 14 6 -3.2853 2.2581 3.7224 15 7 -3.7089 2.9973 2.7177 16 14 -4.4592 1.7908 5.0981 17 1 -3.7404 0.9685 6.1043 18 1 -4.9784 3.0223 5.7455 19 1 -5.5922 1.0106 4.5386 20 7 0.7419 0.7884 4.1385 21 7 1.9466 0.3534 4.2427 22 6 2.6605 0.7511 3.2157 23 7 4.0002 0.4787 2.9905 24 6 4.1930 -0.1767 1.6887 25 6 5.6887 -0.4048 1.4548 26 8 6.2224 -1.1768 2.5339 27 6 6.0526 -0.5678 3.8167 28 6 4.5606 -0.3412 4.0745 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.2479 1.5054 -2.1241 35 1 3.0775 3.8223 -2.1248 36 1 3.3244 5.0463 -0.0036 37 1 2.7419 3.9555 2.1240 38 1 -4.6314 3.2956 2.6904 39 1 3.6734 -1.1348 1.6831 40 1 3.7939 0.4592 0.8984 41 1 6.2004 0.5564 1.4069 42 1 5.8334 -0.9413 0.5170 43 1 6.5749 0.3888 3.8374 44 1 6.4600 -1.2217 4.5876 45 1 4.4298 0.1746 5.0258 46 1 4.0468 -1.3020 4.1070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007072857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:12 Heat of formation + Delta-G solvation = 74.506537 kcal Electronic energy + Delta-G solvation = -31281.657894 eV Core-core repulsion = 27299.309685 eV Total energy + Delta-G solvation = -3982.348209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.136 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.43006 -39.59892 -39.45722 -35.87604 -34.61479 -33.82565 -32.65887 -31.39554 -30.03117 -29.64579 -29.04619 -26.86627 -25.59781 -24.56481 -23.93198 -23.26197 -21.77875 -21.61273 -20.76494 -20.24120 -18.46917 -17.63229 -16.68215 -16.47657 -16.14763 -15.87693 -15.57768 -15.41867 -15.09303 -14.94077 -14.79843 -14.48094 -14.28456 -13.96189 -13.78074 -13.49555 -13.22384 -13.03069 -12.54698 -12.24645 -11.89026 -11.67230 -11.62175 -11.57226 -11.41048 -11.18661 -11.11227 -11.01272 -10.94226 -10.87553 -10.62918 -10.40922 -10.19348 -10.06912 -9.79639 -9.66813 -9.25387 -8.94836 -8.83677 -8.69653 -8.26495 -6.68318 -6.47589 -4.21454 1.06704 1.26111 2.16537 2.28754 3.04484 3.16999 3.23527 3.34476 3.42649 3.55090 3.63130 3.82283 4.00800 4.59349 4.65937 4.72221 4.78188 4.86832 4.93948 4.94559 4.95952 5.01843 5.11682 5.13908 5.32480 5.32686 5.40585 5.42596 5.48412 5.50822 5.55267 5.64765 5.67145 5.76184 5.85827 5.95625 6.04255 6.11306 6.16080 6.29758 6.31429 6.37034 6.47192 6.67667 6.72133 6.77698 6.89173 6.93194 7.56424 7.65095 8.36611 9.04676 9.38475 10.60385 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004041 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.568102 B = 6927.101747 C = 8416.716874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.113 4.113 5 C -0.104 4.104 6 C -0.116 4.116 7 C -0.087 4.087 8 C 0.130 3.870 9 N -0.438 5.438 10 C 0.180 3.820 11 S 0.150 5.850 12 C -0.535 4.535 13 H 0.105 0.895 14 C 0.077 3.923 15 N -0.878 5.878 16 Si 0.930 3.070 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.278 1.278 20 N -0.295 5.295 21 N -0.311 5.311 22 C 0.329 3.671 23 N -0.442 5.442 24 C 0.006 3.994 25 C 0.069 3.931 26 O -0.384 6.384 27 C 0.064 3.936 28 C 0.036 3.964 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.273 0.727 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.266 -2.004 -9.099 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.132 4.132 5 C -0.122 4.122 6 C -0.134 4.134 7 C -0.107 4.107 8 C 0.039 3.961 9 N -0.136 5.136 10 C -0.190 4.190 11 S 0.382 5.618 12 C -0.684 4.684 13 H 0.123 0.877 14 C -0.132 4.132 15 N -0.513 5.513 16 Si 0.755 3.245 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.204 1.204 20 N -0.138 5.138 21 N -0.155 5.155 22 C -0.030 4.030 23 N -0.167 5.167 24 C -0.121 4.121 25 C -0.008 4.008 26 O -0.303 6.303 27 C -0.013 4.013 28 C -0.092 4.092 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.844 -1.674 -8.801 19.079 hybrid contribution -0.767 -0.573 0.733 1.205 sum 16.078 -2.247 -8.068 18.128 Atomic orbital electron populations 1.22095 0.92921 1.02416 1.04930 1.20698 0.98068 0.91624 1.02301 1.20059 0.97488 0.96957 0.91896 1.20922 1.00117 0.95317 0.96834 1.21229 0.98352 0.94412 0.98211 1.21013 1.00656 1.00113 0.91657 1.21246 0.96949 0.93116 0.99355 1.17289 1.02958 0.92557 0.83302 1.43306 1.08934 1.43080 1.18234 1.28421 0.92456 1.04292 0.93874 1.83625 0.90798 1.58004 1.29324 1.23262 0.95793 1.39444 1.09882 0.87705 1.25037 0.97269 0.93916 0.97026 1.69993 1.17773 1.33451 1.30076 0.85909 0.79375 0.78578 0.80624 1.18845 1.20365 1.20362 1.74573 1.08876 1.14999 1.15392 1.74326 0.99486 1.21708 1.19969 1.22481 0.89381 0.99163 0.91944 1.58852 1.08254 1.45290 1.04296 1.23286 0.98738 0.98826 0.91297 1.22646 0.91122 0.96550 0.90531 1.87984 1.80032 1.47021 1.15228 1.22761 0.94125 0.98861 0.85539 1.22716 0.95184 0.96974 0.94321 0.92386 0.92610 0.89401 0.90920 0.91621 0.85212 0.85447 0.85211 0.85387 0.91711 0.92805 0.88340 0.92005 0.87992 0.92073 0.87714 0.88233 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.90 37.16 0.37 -2.32 16 2 C -0.09 -1.26 5.15 -27.88 -0.14 -1.40 16 3 C -0.06 -0.87 3.46 -104.45 -0.36 -1.24 16 4 C -0.11 -1.26 9.68 -39.61 -0.38 -1.65 16 5 C -0.10 -1.05 10.04 -39.55 -0.40 -1.45 16 6 C -0.12 -1.31 10.04 -39.61 -0.40 -1.71 16 7 C -0.09 -1.27 9.97 -39.41 -0.39 -1.66 16 8 C 0.13 2.11 4.36 -83.58 -0.36 1.74 16 9 N -0.44 -8.47 2.00 -61.02 -0.12 -8.59 16 10 C 0.18 4.18 7.15 -87.48 -0.63 3.55 16 11 S 0.15 3.73 19.46 -107.50 -2.09 1.63 16 12 C -0.54 -14.91 9.37 30.85 0.29 -14.62 16 13 H 0.10 3.03 6.93 -52.49 -0.36 2.67 16 14 C 0.08 2.08 5.49 -17.48 -0.10 1.98 16 15 N -0.88 -24.35 13.22 55.48 0.73 -23.62 16 16 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 17 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 N -0.30 -7.38 11.02 30.86 0.34 -7.04 16 21 N -0.31 -6.95 11.29 30.43 0.34 -6.60 16 22 C 0.33 6.29 6.80 -318.07 -2.16 4.13 16 23 N -0.44 -6.74 4.76 -174.02 -0.83 -7.57 16 24 C 0.01 0.08 4.25 -3.71 -0.02 0.06 16 25 C 0.07 0.71 7.01 37.21 0.26 0.97 16 26 O -0.38 -4.49 10.83 -35.23 -0.38 -4.87 16 27 C 0.06 0.67 7.01 37.21 0.26 0.93 16 28 C 0.04 0.48 5.02 -3.71 -0.02 0.46 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.76 4.60 -51.93 -0.24 1.52 16 32 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.07 1.04 5.09 -51.93 -0.26 0.77 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.05 0.75 7.41 -51.93 -0.38 0.37 16 40 H 0.10 1.28 3.85 -51.93 -0.20 1.08 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.37 8.05 -51.93 -0.42 0.96 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -32.26 379.64 -11.56 -43.83 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.07 Total: 3.08 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.18 Total: -12.22 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.47 Total: -53.42 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.38 Total: -4.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.09 Total: 1.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.26 -11.56 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007072857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.333 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds