Wall clock time and date at job start Tue Mar 31 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47672 * 2 1 4 4 O 1.45201 * 109.46774 * 240.00064 * 2 1 3 5 5 C 1.34753 * 116.99670 * 90.00339 * 4 2 1 6 6 O 1.21499 * 120.00536 * 359.97438 * 5 4 2 7 7 C 1.47464 * 120.00103 * 179.97438 * 5 4 2 8 8 C 1.39843 * 120.06598 * 359.72748 * 7 5 4 9 9 C 1.37614 * 119.93282 * 179.72115 * 8 7 5 10 10 C 1.39272 * 120.06105 * 0.55051 * 9 8 7 11 11 N 1.39078 * 119.92738 * 179.69955 * 10 9 8 12 12 C 1.34778 * 120.00115 * 213.22014 * 11 10 9 13 13 O 1.21723 * 119.99808 * 4.80167 * 12 11 10 14 14 C 1.46198 * 119.99927 * 184.79894 * 12 11 10 15 15 H 1.07997 * 119.99835 * 0.02562 * 14 12 11 16 16 C 1.40122 * 119.99753 * 180.02562 * 14 12 11 17 17 N 1.30632 * 119.99997 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99888 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47041 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47314 * 119.99871 * 18 16 14 21 21 H 1.48499 * 109.47046 * 239.99711 * 18 16 14 22 22 C 1.39267 * 120.14245 * 359.72421 * 10 9 8 23 23 C 1.37607 * 120.06436 * 359.97438 * 22 10 9 24 24 C 1.50703 * 109.47272 * 120.00781 * 2 1 3 25 25 O 1.21279 * 120.00223 * 110.25908 * 24 2 1 26 26 N 1.34777 * 119.99648 * 290.25584 * 24 2 1 27 27 C 1.47024 * 125.64719 * 355.17544 * 26 24 2 28 28 C 1.54326 * 107.40159 * 180.94272 * 27 26 24 29 29 C 1.55546 * 102.75976 * 22.24478 * 28 27 26 30 30 C 1.47421 * 125.64943 * 175.13623 * 26 24 2 31 31 H 1.09000 * 109.46969 * 183.23100 * 1 2 3 32 32 H 1.08999 * 109.46718 * 303.22667 * 1 2 3 33 33 H 1.09001 * 109.47154 * 63.23087 * 1 2 3 34 34 H 1.08005 * 120.03270 * 359.96715 * 8 7 5 35 35 H 1.07996 * 119.96263 * 180.27519 * 9 8 7 36 36 H 0.97007 * 119.99835 * 33.22255 * 11 10 9 37 37 H 0.97005 * 120.00179 * 179.97438 * 17 16 14 38 38 H 1.07997 * 119.97013 * 179.97438 * 22 10 9 39 39 H 1.07997 * 120.03667 * 179.97438 * 23 22 10 40 40 H 1.09000 * 109.89000 * 300.44432 * 27 26 24 41 41 H 1.09008 * 109.87908 * 61.45491 * 27 26 24 42 42 H 1.08999 * 110.71547 * 140.63304 * 28 27 26 43 43 H 1.08998 * 110.72320 * 263.91047 * 28 27 26 44 44 H 1.08992 * 110.96940 * 206.39858 * 29 28 27 45 45 H 1.09000 * 111.02756 * 82.55246 * 29 28 27 46 46 H 1.08997 * 110.36555 * 274.74517 * 30 26 24 47 47 H 1.08997 * 110.36445 * 36.95970 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2179 0.0670 -2.2854 6 8 1.9970 1.2613 -2.2547 7 6 2.7092 -0.5602 -3.5263 8 6 2.9694 -1.9337 -3.5616 9 6 3.4223 -2.5171 -4.7227 10 6 3.6326 -1.7390 -5.8585 11 7 4.0964 -2.3305 -7.0287 12 6 4.9065 -1.6417 -7.8568 13 8 5.3028 -0.5354 -7.5393 14 6 5.3093 -2.2232 -9.1362 15 1 4.9573 -3.2045 -9.4180 16 6 6.1519 -1.5072 -9.9969 17 7 6.5772 -0.3199 -9.6562 18 14 6.6660 -2.2499 -11.6320 19 1 6.0530 -3.5943 -11.7795 20 1 6.2090 -1.3727 -12.7396 21 1 8.1452 -2.3732 -11.6763 22 6 3.3799 -0.3699 -5.8249 23 6 2.9209 0.2182 -4.6685 24 6 2.0324 -0.7106 1.2304 25 8 2.5774 -1.7891 1.1277 26 7 1.8760 -0.1474 2.4448 27 6 1.3275 1.1918 2.7040 28 6 1.3613 1.4169 4.2304 29 6 2.4542 0.4153 4.7013 30 6 2.2259 -0.7725 3.7333 31 1 -0.3633 -1.0260 0.0579 32 1 -0.3633 0.5631 0.8597 33 1 -0.3633 0.4629 -0.9175 34 1 2.8112 -2.5367 -2.6796 35 1 3.6192 -3.5786 -4.7518 36 1 3.8367 -3.2389 -7.2489 37 1 7.1608 0.1756 -10.2518 38 1 3.5442 0.2309 -6.7071 39 1 2.7255 1.2800 -4.6428 40 1 1.9367 1.9452 2.2046 41 1 0.3002 1.2477 2.3438 42 1 1.6493 2.4422 4.4627 43 1 0.3970 1.1754 4.6774 44 1 2.2877 0.1140 5.7354 45 1 3.4515 0.8364 4.5744 46 1 1.4059 -1.3976 4.0867 47 1 3.1365 -1.3631 3.6335 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007564465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:04 Heat of formation + Delta-G solvation = -126.674344 kcal Electronic energy + Delta-G solvation = -30942.744612 eV Core-core repulsion = 26476.626923 eV Total energy + Delta-G solvation = -4466.117689 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.93004 -40.04033 -39.13152 -37.76181 -36.98840 -36.22033 -33.67745 -33.02852 -32.57286 -31.34303 -30.51209 -29.58087 -29.30394 -26.58651 -25.62828 -24.04321 -22.93798 -22.33284 -21.71922 -20.85494 -19.92846 -19.73163 -18.23256 -17.71783 -17.33899 -16.91997 -16.78562 -16.23762 -16.04271 -15.58654 -15.31052 -15.03855 -14.52066 -14.27567 -14.07177 -13.96343 -13.87817 -13.58014 -13.29938 -13.18792 -13.12047 -12.79914 -12.72037 -12.61948 -12.58109 -12.14340 -11.90470 -11.85464 -11.79023 -11.70438 -11.34913 -11.27181 -11.17722 -10.93604 -10.80423 -10.67672 -10.40909 -10.37438 -9.98735 -9.50351 -9.09856 -9.00376 -8.60326 -7.88656 -7.30079 -6.44317 -4.92302 1.13055 1.88961 2.06145 2.22753 2.81666 2.98608 3.02160 3.10275 3.14660 3.86089 3.91414 4.00824 4.13608 4.25488 4.36788 4.42041 4.47310 4.53702 4.64044 4.69288 4.80580 4.84905 5.03413 5.19297 5.22392 5.28608 5.29845 5.34841 5.36532 5.40414 5.45150 5.52704 5.60384 5.70794 5.78848 5.82295 5.94279 6.09619 6.29836 6.46809 6.62400 6.84758 6.90977 6.99790 7.17329 7.22426 7.59093 7.74716 7.87812 7.90513 8.03402 8.75458 9.04842 10.25050 10.45784 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.001602 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.190803 B =17474.392420 C =17639.422396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.108 0.892 4 O -0.327 6.327 5 C 0.519 3.481 6 O -0.520 6.520 7 C -0.189 4.189 8 C -0.032 4.032 9 C -0.196 4.196 10 C 0.238 3.762 11 N -0.693 5.693 12 C 0.537 3.463 13 O -0.554 6.554 14 C -0.535 4.535 15 H 0.075 0.925 16 C 0.085 3.915 17 N -0.756 5.756 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.149 4.149 23 C -0.027 4.027 24 C 0.535 3.465 25 O -0.512 6.512 26 N -0.620 5.620 27 C 0.089 3.911 28 C -0.131 4.131 29 C -0.134 4.134 30 C 0.106 3.894 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.397 0.603 37 H 0.273 0.727 38 H 0.149 0.851 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 1.216 24.796 27.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.126 0.874 4 O -0.244 6.244 5 C 0.367 3.633 6 O -0.410 6.410 7 C -0.191 4.191 8 C -0.051 4.051 9 C -0.218 4.218 10 C 0.136 3.864 11 N -0.334 5.334 12 C 0.345 3.655 13 O -0.436 6.436 14 C -0.571 4.571 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.384 5.384 18 Si 0.739 3.261 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.170 4.170 23 C -0.046 4.046 24 C 0.322 3.678 25 O -0.386 6.386 26 N -0.357 5.357 27 C -0.033 4.033 28 C -0.169 4.169 29 C -0.172 4.172 30 C -0.016 4.016 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.167 0.833 39 H 0.149 0.851 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.020 1.875 24.705 27.538 hybrid contribution 0.153 -0.623 -0.782 1.012 sum -11.868 1.252 23.923 26.734 Atomic orbital electron populations 1.22177 0.91837 1.04028 1.04167 1.22277 0.95989 0.97500 0.82653 0.87449 1.86708 1.77491 1.41011 1.19158 1.21402 0.73640 0.84927 0.83374 1.90780 1.49967 1.16026 1.84250 1.18715 1.14346 0.94644 0.91439 1.21099 0.93418 0.93118 0.97456 1.20867 1.08598 1.00389 0.91899 1.18315 0.88356 0.92800 0.86944 1.44318 1.50167 1.18308 1.20640 1.18486 0.77589 0.85342 0.84111 1.90655 1.57044 1.20638 1.75248 1.20910 1.31161 1.04386 1.00604 0.90729 1.25764 0.94269 0.94195 0.99413 1.69983 1.23670 1.09746 1.34955 0.86191 0.78860 0.79939 0.81140 1.18565 1.19905 1.19934 1.21309 1.01455 0.94617 0.99592 1.21035 0.93539 0.99525 0.90528 1.19855 0.79206 0.85812 0.82923 1.90759 1.41232 1.21133 1.85427 1.48358 1.64247 1.17652 1.05453 1.22260 0.99423 0.84241 0.97404 1.22704 0.99938 1.00593 0.93640 1.22871 0.99679 0.95440 0.99248 1.22259 1.01461 0.95894 0.81993 0.90830 0.90206 0.90219 0.84945 0.85522 0.76871 0.91590 0.83347 0.85122 0.90895 0.90727 0.89628 0.90255 0.89519 0.90346 0.91177 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.44 37.16 0.35 -1.14 16 2 C 0.07 0.90 2.38 -27.88 -0.07 0.83 16 3 H 0.11 1.24 6.95 -51.93 -0.36 0.88 16 4 O -0.33 -5.03 8.67 -47.26 -0.41 -5.44 16 5 C 0.52 8.66 7.86 34.49 0.27 8.93 16 6 O -0.52 -9.18 15.60 -19.26 -0.30 -9.48 16 7 C -0.19 -3.29 5.88 -104.94 -0.62 -3.91 16 8 C -0.03 -0.52 9.60 -39.21 -0.38 -0.90 16 9 C -0.20 -3.32 9.94 -39.43 -0.39 -3.71 16 10 C 0.24 4.80 6.28 -83.81 -0.53 4.28 16 11 N -0.69 -14.85 5.30 -11.18 -0.06 -14.91 16 12 C 0.54 14.37 7.47 -13.06 -0.10 14.27 16 13 O -0.55 -16.77 12.64 5.17 0.07 -16.71 16 14 C -0.53 -14.11 9.54 -35.68 -0.34 -14.45 16 15 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 16 C 0.09 2.24 5.50 -17.36 -0.10 2.14 16 17 N -0.76 -21.42 11.82 55.55 0.66 -20.76 16 18 Si 0.91 19.00 29.56 -169.99 -5.02 13.98 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 C -0.15 -3.11 8.62 -39.43 -0.34 -3.45 16 23 C -0.03 -0.50 9.58 -39.21 -0.38 -0.88 16 24 C 0.53 6.69 7.17 -10.98 -0.08 6.61 16 25 O -0.51 -8.45 16.76 -13.90 -0.23 -8.69 16 26 N -0.62 -5.48 3.33 -170.52 -0.57 -6.04 16 27 C 0.09 0.49 6.15 -3.06 -0.02 0.47 16 28 C -0.13 -0.45 6.98 -24.68 -0.17 -0.62 16 29 C -0.13 -0.56 7.10 -24.37 -0.17 -0.73 16 30 C 0.11 0.75 6.93 -2.53 -0.02 0.73 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.50 5.70 -51.93 -0.30 0.20 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.13 1.93 7.60 -52.48 -0.40 1.53 16 35 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.40 7.14 8.79 -40.82 -0.36 6.78 16 37 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 38 H 0.15 3.49 6.36 -52.49 -0.33 3.16 16 39 H 0.13 2.28 7.64 -52.49 -0.40 1.88 16 40 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 41 H 0.07 0.32 5.94 -51.92 -0.31 0.01 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -35.64 397.72 -9.17 -44.81 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.22 Total: 8.77 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -3.07 Total: 8.48 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.03 Total: -41.71 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.88 Total: -40.31 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.64 -9.17 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007564465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.868 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds