Wall clock time and date at job start Tue Mar 31 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47672 * 2 1 4 4 O 1.45201 * 109.46774 * 240.00064 * 2 1 3 5 5 C 1.34753 * 116.99670 * 90.00339 * 4 2 1 6 6 O 1.21499 * 120.00536 * 359.97438 * 5 4 2 7 7 C 1.47464 * 120.00103 * 179.97438 * 5 4 2 8 8 C 1.39843 * 120.06598 * 359.72748 * 7 5 4 9 9 C 1.37614 * 119.93282 * 179.72115 * 8 7 5 10 10 C 1.39272 * 120.06105 * 0.55051 * 9 8 7 11 11 N 1.39078 * 119.92738 * 179.69955 * 10 9 8 12 12 C 1.34778 * 120.00115 * 213.22014 * 11 10 9 13 13 O 1.21723 * 119.99808 * 4.80167 * 12 11 10 14 14 C 1.46198 * 119.99927 * 184.79894 * 12 11 10 15 15 H 1.07997 * 119.99835 * 0.02562 * 14 12 11 16 16 C 1.40122 * 119.99753 * 180.02562 * 14 12 11 17 17 N 1.30632 * 119.99997 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99888 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47041 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47314 * 119.99871 * 18 16 14 21 21 H 1.48499 * 109.47046 * 239.99711 * 18 16 14 22 22 C 1.39267 * 120.14245 * 359.72421 * 10 9 8 23 23 C 1.37607 * 120.06436 * 359.97438 * 22 10 9 24 24 C 1.50703 * 109.47272 * 120.00781 * 2 1 3 25 25 O 1.21279 * 120.00223 * 110.25908 * 24 2 1 26 26 N 1.34777 * 119.99648 * 290.25584 * 24 2 1 27 27 C 1.47024 * 125.64719 * 355.17544 * 26 24 2 28 28 C 1.54326 * 107.40159 * 180.94272 * 27 26 24 29 29 C 1.55546 * 102.75976 * 22.24478 * 28 27 26 30 30 C 1.47421 * 125.64943 * 175.13623 * 26 24 2 31 31 H 1.09000 * 109.46969 * 183.23100 * 1 2 3 32 32 H 1.08999 * 109.46718 * 303.22667 * 1 2 3 33 33 H 1.09001 * 109.47154 * 63.23087 * 1 2 3 34 34 H 1.08005 * 120.03270 * 359.96715 * 8 7 5 35 35 H 1.07996 * 119.96263 * 180.27519 * 9 8 7 36 36 H 0.97007 * 119.99835 * 33.22255 * 11 10 9 37 37 H 0.97005 * 120.00179 * 179.97438 * 17 16 14 38 38 H 1.07997 * 119.97013 * 179.97438 * 22 10 9 39 39 H 1.07997 * 120.03667 * 179.97438 * 23 22 10 40 40 H 1.09000 * 109.89000 * 300.44432 * 27 26 24 41 41 H 1.09008 * 109.87908 * 61.45491 * 27 26 24 42 42 H 1.08999 * 110.71547 * 140.63304 * 28 27 26 43 43 H 1.08998 * 110.72320 * 263.91047 * 28 27 26 44 44 H 1.08992 * 110.96940 * 206.39858 * 29 28 27 45 45 H 1.09000 * 111.02756 * 82.55246 * 29 28 27 46 46 H 1.08997 * 110.36555 * 274.74517 * 30 26 24 47 47 H 1.08997 * 110.36445 * 36.95970 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2179 0.0670 -2.2854 6 8 1.9970 1.2613 -2.2547 7 6 2.7092 -0.5602 -3.5263 8 6 2.9694 -1.9337 -3.5616 9 6 3.4223 -2.5171 -4.7227 10 6 3.6326 -1.7390 -5.8585 11 7 4.0964 -2.3305 -7.0287 12 6 4.9065 -1.6417 -7.8568 13 8 5.3028 -0.5354 -7.5393 14 6 5.3093 -2.2232 -9.1362 15 1 4.9573 -3.2045 -9.4180 16 6 6.1519 -1.5072 -9.9969 17 7 6.5772 -0.3199 -9.6562 18 14 6.6660 -2.2499 -11.6320 19 1 6.0530 -3.5943 -11.7795 20 1 6.2090 -1.3727 -12.7396 21 1 8.1452 -2.3732 -11.6763 22 6 3.3799 -0.3699 -5.8249 23 6 2.9209 0.2182 -4.6685 24 6 2.0324 -0.7106 1.2304 25 8 2.5774 -1.7891 1.1277 26 7 1.8760 -0.1474 2.4448 27 6 1.3275 1.1918 2.7040 28 6 1.3613 1.4169 4.2304 29 6 2.4542 0.4153 4.7013 30 6 2.2259 -0.7725 3.7333 31 1 -0.3633 -1.0260 0.0579 32 1 -0.3633 0.5631 0.8597 33 1 -0.3633 0.4629 -0.9175 34 1 2.8112 -2.5367 -2.6796 35 1 3.6192 -3.5786 -4.7518 36 1 3.8367 -3.2389 -7.2489 37 1 7.1608 0.1756 -10.2518 38 1 3.5442 0.2309 -6.7071 39 1 2.7255 1.2800 -4.6428 40 1 1.9367 1.9452 2.2046 41 1 0.3002 1.2477 2.3438 42 1 1.6493 2.4422 4.4627 43 1 0.3970 1.1754 4.6774 44 1 2.2877 0.1140 5.7354 45 1 3.4515 0.8364 4.5744 46 1 1.4059 -1.3976 4.0867 47 1 3.1365 -1.3631 3.6335 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007564465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:03 Heat of formation + Delta-G solvation = -149.132458 kcal Electronic energy + Delta-G solvation = -30943.718468 eV Core-core repulsion = 26476.626923 eV Total energy + Delta-G solvation = -4467.091546 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.04747 -41.14890 -40.63101 -38.83413 -38.42464 -37.49283 -35.45627 -34.59390 -33.88811 -32.14709 -31.90568 -31.03719 -29.88225 -28.48793 -26.50509 -25.27143 -24.17084 -23.56114 -22.43363 -22.06275 -21.52535 -20.58584 -19.63613 -19.30559 -18.40150 -18.15646 -17.73429 -17.56733 -17.49204 -17.17649 -16.30603 -16.14939 -15.88250 -15.71692 -15.43558 -14.94355 -14.80218 -14.65111 -14.46404 -14.37883 -14.26779 -14.10735 -13.87500 -13.64154 -13.57374 -13.33078 -13.30617 -13.13806 -12.84743 -12.82106 -12.75097 -12.22544 -12.17516 -12.15827 -11.99956 -11.98652 -11.76863 -11.58241 -11.21368 -10.98000 -10.93752 -10.15105 -9.86914 -9.81166 -8.97990 -8.40638 -6.98668 -0.33319 0.41787 1.06384 1.29897 1.35064 1.40644 1.45438 1.58636 2.05036 2.19093 2.33559 2.74498 2.85367 3.16165 3.52056 3.54729 3.62592 3.71743 3.74119 3.78124 3.87660 3.97454 4.04399 4.22828 4.32801 4.38888 4.43447 4.49668 4.55419 4.62444 4.65239 4.81564 4.88919 4.95513 4.99646 5.01710 5.05725 5.12055 5.19551 5.23526 5.25034 5.33954 5.35848 5.36441 5.64376 5.75178 6.11242 6.21469 6.23264 6.57140 6.74731 6.87767 7.23648 8.27507 8.52632 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.001602 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.190803 B =17474.392420 C =17639.422396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.068 3.932 3 H 0.113 0.887 4 O -0.335 6.335 5 C 0.525 3.475 6 O -0.532 6.532 7 C -0.187 4.187 8 C -0.022 4.022 9 C -0.177 4.177 10 C 0.212 3.788 11 N -0.685 5.685 12 C 0.525 3.475 13 O -0.602 6.602 14 C -0.560 4.560 15 H 0.097 0.903 16 C 0.029 3.971 17 N -0.811 5.811 18 Si 1.002 2.998 19 H -0.244 1.244 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.168 4.168 23 C -0.028 4.028 24 C 0.531 3.469 25 O -0.564 6.564 26 N -0.614 5.614 27 C 0.077 3.923 28 C -0.122 4.122 29 C -0.127 4.127 30 C 0.096 3.904 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.414 0.586 37 H 0.279 0.721 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 0.197 26.672 30.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.010 3.990 3 H 0.130 0.870 4 O -0.251 6.251 5 C 0.373 3.627 6 O -0.423 6.423 7 C -0.189 4.189 8 C -0.041 4.041 9 C -0.198 4.198 10 C 0.111 3.889 11 N -0.328 5.328 12 C 0.333 3.667 13 O -0.487 6.487 14 C -0.596 4.596 15 H 0.115 0.885 16 C -0.187 4.187 17 N -0.440 5.440 18 Si 0.821 3.179 19 H -0.167 1.167 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.190 4.190 23 C -0.047 4.047 24 C 0.318 3.682 25 O -0.443 6.443 26 N -0.349 5.349 27 C -0.044 4.044 28 C -0.160 4.160 29 C -0.165 4.165 30 C -0.025 4.025 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.251 0.749 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.153 0.847 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.506 0.853 26.665 29.903 hybrid contribution 0.491 -0.243 -1.097 1.226 sum -13.015 0.610 25.568 28.697 Atomic orbital electron populations 1.22186 0.89381 1.04543 1.05397 1.22632 0.97899 0.97235 0.81218 0.86968 1.86664 1.77392 1.41336 1.19680 1.21135 0.73365 0.84635 0.83571 1.90770 1.50423 1.16516 1.84589 1.18886 1.13340 0.95260 0.91432 1.21374 0.92019 0.92708 0.97995 1.21126 1.06573 1.01630 0.90437 1.18513 0.89890 0.92853 0.87615 1.43805 1.49679 1.18688 1.20645 1.18820 0.77878 0.85011 0.85014 1.90619 1.58998 1.22663 1.76460 1.21465 1.31659 1.05502 1.00928 0.88471 1.27017 0.93634 0.94287 1.03798 1.70142 1.24893 1.11843 1.37110 0.84899 0.78427 0.79553 0.75045 1.16655 1.19370 1.19422 1.21074 1.03399 0.95203 0.99278 1.20997 0.93436 0.99922 0.90336 1.19952 0.78920 0.85303 0.84007 1.90727 1.43899 1.23333 1.86304 1.48476 1.62726 1.18767 1.04910 1.22598 1.00139 0.82278 0.99393 1.22737 1.00388 1.01173 0.91674 1.22866 0.99832 0.94246 0.99532 1.22480 1.00949 0.97215 0.81895 0.90910 0.87021 0.90657 0.82420 0.82203 0.74945 0.91133 0.87013 0.84720 0.90772 0.89020 0.88041 0.88674 0.87369 0.90904 0.90093 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.44 71.98 0.68 -1.86 16 2 C 0.07 1.57 2.38 29.85 0.07 1.64 16 3 H 0.11 2.45 6.95 -2.39 -0.02 2.44 16 4 O -0.33 -9.98 8.67 -50.30 -0.44 -10.42 16 5 C 0.53 17.17 7.86 70.25 0.55 17.73 16 6 O -0.53 -18.49 15.60 19.84 0.31 -18.18 16 7 C -0.19 -6.43 5.88 -20.07 -0.12 -6.55 16 8 C -0.02 -0.69 9.60 22.51 0.22 -0.47 16 9 C -0.18 -5.72 9.94 22.37 0.22 -5.50 16 10 C 0.21 8.68 6.28 38.49 0.24 8.92 16 11 N -0.69 -29.91 5.30 -307.50 -1.63 -31.54 16 12 C 0.53 29.16 7.47 86.31 0.65 29.80 16 13 O -0.60 -38.56 12.64 -4.42 -0.06 -38.62 16 14 C -0.56 -30.00 9.54 24.80 0.24 -29.77 16 15 H 0.10 4.57 7.85 -2.91 -0.02 4.55 16 16 C 0.03 1.56 5.50 85.33 0.47 2.03 16 17 N -0.81 -47.74 11.82 21.85 0.26 -47.48 16 18 Si 1.00 38.96 29.56 68.60 2.03 40.98 16 19 H -0.24 -8.67 7.11 99.48 0.71 -7.96 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.17 -7.42 8.62 22.37 0.19 -7.23 16 23 C -0.03 -1.07 9.58 22.51 0.22 -0.85 16 24 C 0.53 12.95 7.17 87.66 0.63 13.57 16 25 O -0.56 -18.84 16.76 15.58 0.26 -18.57 16 26 N -0.61 -9.97 3.33 -811.78 -2.70 -12.67 16 27 C 0.08 0.64 6.15 86.73 0.53 1.18 16 28 C -0.12 -0.41 6.98 31.92 0.22 -0.18 16 29 C -0.13 -0.74 7.10 32.13 0.23 -0.51 16 30 C 0.10 1.24 6.93 86.86 0.60 1.84 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.04 5.70 -2.39 -0.01 1.02 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.16 4.18 7.60 -2.91 -0.02 4.16 16 35 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 36 H 0.41 14.73 8.79 -92.70 -0.81 13.91 16 37 H 0.28 14.81 8.29 -92.70 -0.77 14.04 16 38 H 0.11 5.75 6.36 -2.91 -0.02 5.73 16 39 H 0.13 4.92 7.64 -2.91 -0.02 4.90 16 40 H 0.07 0.63 8.11 -2.39 -0.02 0.61 16 41 H 0.09 0.46 5.94 -2.38 -0.01 0.45 16 42 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 47 H 0.06 1.04 7.99 -2.39 -0.02 1.02 16 Total: -1.00 -82.59 397.72 4.08 -78.50 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.21 Total: 34.21 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 5.84 Total: 23.78 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -4.07 Total: -91.69 kcal Atomic # 8 Polarization: -85.87 SS G_CDS: 0.08 Total: -85.79 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.98 kcal Total: -82.59 4.08 -78.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007564465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.630 kcal (2) G-P(sol) polarization free energy of solvation -82.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds