Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38238 * 119.99678 * 2 1 4 4 C 1.38234 * 119.99353 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00486 * 359.97438 * 4 3 2 6 6 S 1.76195 * 120.00048 * 179.97438 * 5 4 3 7 7 O 1.42104 * 106.40530 * 336.45758 * 6 5 4 8 8 O 1.42103 * 106.40440 * 203.53942 * 6 5 4 9 9 N 1.65598 * 107.21790 * 89.99978 * 6 5 4 10 10 N 1.40100 * 120.00095 * 60.00026 * 9 6 5 11 11 C 1.29812 * 119.99843 * 180.02562 * 10 9 6 12 12 C 1.47391 * 119.99687 * 180.02562 * 11 10 9 13 13 C 1.39798 * 120.08154 * 179.97438 * 12 11 10 14 14 C 1.37735 * 119.90644 * 179.97438 * 13 12 11 15 15 C 1.39070 * 120.08947 * 359.97438 * 14 13 12 16 16 O 1.35670 * 119.91119 * 180.02562 * 15 14 13 17 17 C 1.34813 * 117.00020 * 354.44576 * 16 15 14 18 18 H 1.07999 * 120.00226 * 5.06249 * 17 16 15 19 19 C 1.38615 * 119.99995 * 185.05734 * 17 16 15 20 20 N 1.31580 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00340 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46980 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47542 * 119.99947 * 21 19 17 24 24 H 1.48506 * 109.47017 * 240.00324 * 21 19 17 25 25 C 1.39065 * 120.17448 * 0.02562 * 15 14 13 26 26 C 1.37737 * 120.08549 * 0.02562 * 25 15 14 27 27 C 1.38239 * 119.99903 * 0.25120 * 5 4 3 28 28 C 1.38228 * 120.00111 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47243 * 90.00494 * 1 2 3 30 30 H 1.08997 * 109.47294 * 210.00113 * 1 2 3 31 31 H 1.08997 * 109.47323 * 330.00646 * 1 2 3 32 32 H 1.07994 * 120.00337 * 359.97131 * 3 2 1 33 33 H 1.08000 * 119.99499 * 179.97438 * 4 3 2 34 34 H 0.97004 * 120.00089 * 239.99373 * 9 6 5 35 35 H 1.08001 * 120.00258 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.04453 * 0.24984 * 13 12 11 37 37 H 1.08001 * 119.95213 * 180.02562 * 14 13 12 38 38 H 0.97002 * 120.00568 * 179.97438 * 20 19 17 39 39 H 1.07996 * 119.95267 * 179.97438 * 25 15 14 40 40 H 1.08002 * 120.04216 * 180.02562 * 26 25 15 41 41 H 1.07996 * 119.99887 * 179.72780 * 27 5 4 42 42 H 1.08006 * 119.99953 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0336 0.0000 0.0016 7 8 6.4350 1.2493 -0.5440 8 8 6.4350 -1.2502 -0.5417 9 7 6.5238 0.0015 1.5834 10 7 6.1517 -1.0485 2.4330 11 6 6.5356 -1.0471 3.6731 12 6 6.1446 -2.1520 4.5668 13 6 6.5575 -2.1525 5.9024 14 6 6.1896 -3.1867 6.7345 15 6 5.4081 -4.2290 6.2477 16 8 5.0474 -5.2455 7.0707 17 6 5.5730 -5.2438 8.3121 18 1 6.1826 -4.4146 8.6393 19 6 5.3308 -6.3064 9.1687 20 7 4.5884 -7.3169 8.7699 21 14 6.0585 -6.3039 10.8891 22 1 6.8492 -5.0630 11.0903 23 1 4.9631 -6.3612 11.8900 24 1 6.9424 -7.4857 11.0544 25 6 4.9954 -4.2320 4.9197 26 6 5.3600 -3.2021 4.0810 27 6 3.5805 -1.1972 -0.0031 28 6 2.1982 -1.1971 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6582 2.1325 -0.0005 33 1 4.1204 2.1325 0.0001 34 1 7.0687 0.7293 1.9217 35 1 7.1421 -0.2367 4.0497 36 1 7.1603 -1.3410 6.2823 37 1 6.5078 -3.1876 7.7666 38 1 4.4192 -8.0607 9.3691 39 1 4.3890 -5.0434 4.5454 40 1 5.0388 -3.2049 3.0499 41 1 4.1205 -2.1324 -0.0067 42 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008079428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -16.912050 kcal Electronic energy + Delta-G solvation = -27858.954385 eV Core-core repulsion = 23704.516123 eV Total energy + Delta-G solvation = -4154.438262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 5.62 seconds Orbital eigenvalues (eV) -39.56864 -39.18225 -37.49223 -37.31049 -36.09277 -36.02819 -33.31652 -32.59200 -31.63287 -31.30802 -30.38525 -28.25249 -27.59871 -25.64498 -23.16428 -22.95120 -22.19890 -22.05184 -20.33320 -19.74838 -18.35387 -18.20717 -17.73300 -17.24801 -16.67320 -16.00625 -15.64778 -15.16790 -14.97737 -14.67832 -14.61729 -14.34219 -14.18313 -13.83763 -13.80974 -13.64402 -13.24463 -12.90906 -12.68280 -12.66369 -12.57373 -12.47433 -12.38867 -12.24420 -12.14812 -11.82854 -11.56455 -11.42749 -11.20563 -11.11726 -10.92827 -10.85937 -10.53662 -10.25070 -9.54949 -9.48310 -9.35965 -9.28456 -8.87583 -8.35173 -7.20522 -6.62880 -4.19371 0.11202 0.58941 1.06722 1.37757 2.14802 2.54631 2.84124 3.04493 3.07290 3.10700 3.20239 3.59681 3.83055 4.11305 4.42785 4.45754 4.50276 4.64182 4.69617 4.89091 4.94599 4.99309 5.04274 5.12408 5.18950 5.31862 5.35895 5.49290 5.63080 5.63958 5.69528 5.81862 5.87604 5.91088 5.96117 6.09307 6.17150 6.30708 6.54098 6.58994 6.74540 6.92015 7.09026 7.16413 7.27528 7.63737 7.82171 7.92915 8.82051 9.48990 10.53950 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002074 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.147660 B =13496.527341 C =14776.003426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.030 4.030 3 C -0.147 4.147 4 C -0.019 4.019 5 C -0.674 4.674 6 S 2.722 3.278 7 O -0.960 6.960 8 O -0.943 6.943 9 N -0.972 5.972 10 N -0.267 5.267 11 C 0.166 3.834 12 C -0.177 4.177 13 C -0.032 4.032 14 C -0.241 4.241 15 C 0.170 3.830 16 O -0.165 6.165 17 C -0.392 4.392 18 H 0.097 0.903 19 C 0.041 3.959 20 N -0.853 5.853 21 Si 0.944 3.056 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.201 4.201 26 C -0.026 4.026 27 C 0.000 4.000 28 C -0.143 4.143 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.395 0.605 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 16.256 -13.403 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.030 4.030 3 C -0.166 4.166 4 C -0.038 4.038 5 C -0.763 4.763 6 S 2.812 3.188 7 O -0.949 6.949 8 O -0.933 6.933 9 N -0.814 5.814 10 N -0.076 5.076 11 C -0.043 4.043 12 C -0.181 4.181 13 C -0.053 4.053 14 C -0.261 4.261 15 C 0.113 3.887 16 O -0.066 6.066 17 C -0.468 4.468 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.487 5.487 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.220 4.220 26 C -0.046 4.046 27 C -0.019 4.019 28 C -0.161 4.161 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.230 0.770 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.545 15.342 -14.968 21.725 hybrid contribution 0.434 1.002 1.931 2.219 sum -3.111 16.344 -13.037 21.137 Atomic orbital electron populations 1.20949 0.90593 1.03609 1.02902 1.20295 0.96512 0.93356 0.92869 1.21127 0.94080 0.97963 1.03408 1.20880 0.94818 0.96389 0.91747 1.30667 1.26416 0.99666 1.19506 1.01127 0.73666 0.73371 0.70662 1.93615 1.82209 1.44272 1.74839 1.93591 1.80522 1.43816 1.75378 1.57325 1.64897 1.29983 1.29212 1.74687 1.20942 1.06865 1.05096 1.24427 0.93662 0.96333 0.89896 1.17804 1.10093 0.97081 0.93158 1.20795 0.96062 0.96688 0.91739 1.21057 1.06947 0.96786 1.01296 1.19590 0.90873 0.87975 0.90266 1.83949 1.59298 1.40018 1.23298 1.21477 1.31714 1.06956 0.86656 0.88532 1.25373 0.96569 0.94363 1.00208 1.70053 1.34236 1.07700 1.36675 0.85594 0.78748 0.78931 0.79875 1.18914 1.19993 1.19962 1.20188 1.08497 1.01766 0.91580 1.20858 0.93783 0.91478 0.98528 1.20983 0.94649 0.96821 0.89450 1.21228 0.94220 0.98106 1.02590 0.90395 0.90725 0.90987 0.85195 0.84494 0.76960 0.86963 0.86823 0.85042 0.91716 0.86082 0.85836 0.83770 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.03 -0.27 5.88 -104.62 -0.62 -0.89 16 3 C -0.15 -1.34 9.70 -39.58 -0.38 -1.73 16 4 C -0.02 -0.20 9.52 -39.58 -0.38 -0.57 16 5 C -0.67 -7.94 5.97 -39.58 -0.24 -8.17 16 6 S 2.72 34.16 5.93 -107.50 -0.64 33.52 16 7 O -0.96 -12.96 17.28 -57.17 -0.99 -13.95 16 8 O -0.94 -14.76 17.28 -57.17 -0.99 -15.75 16 9 N -0.97 -11.31 6.77 60.35 0.41 -10.90 16 10 N -0.27 -3.68 10.59 32.15 0.34 -3.34 16 11 C 0.17 2.19 10.75 -14.68 -0.16 2.03 16 12 C -0.18 -2.80 5.87 -105.01 -0.62 -3.42 16 13 C -0.03 -0.51 9.78 -39.18 -0.38 -0.90 16 14 C -0.24 -4.70 9.15 -39.46 -0.36 -5.06 16 15 C 0.17 3.79 6.65 -38.97 -0.26 3.53 16 16 O -0.17 -4.40 9.75 0.34 0.00 -4.40 16 17 C -0.39 -10.22 9.48 30.87 0.29 -9.93 16 18 H 0.10 2.29 5.19 -52.49 -0.27 2.02 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.85 -23.74 13.67 55.48 0.76 -22.98 16 21 Si 0.94 19.25 29.55 -169.99 -5.02 14.23 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 25 C -0.20 -3.97 9.97 -39.46 -0.39 -4.36 16 26 C -0.03 -0.45 9.57 -39.18 -0.37 -0.83 16 27 C 0.00 0.00 9.52 -39.58 -0.38 -0.37 16 28 C -0.14 -1.44 9.70 -39.59 -0.38 -1.82 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 1.18 7.62 -52.49 -0.40 0.78 16 34 H 0.40 3.46 8.79 -176.25 -1.55 1.91 16 35 H 0.11 1.10 8.02 -52.49 -0.42 0.68 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 2.54 5.62 -52.49 -0.29 2.24 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.12 1.94 7.55 -52.49 -0.40 1.54 16 41 H 0.14 1.63 7.61 -52.49 -0.40 1.23 16 42 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -33.25 384.41 -10.52 -43.77 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.82 Total: 5.95 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -4.36 Total: -31.95 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 1.51 Total: -37.22 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.97 Total: -34.10 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 16 Polarization: 34.16 SS G_CDS: -0.64 Total: 33.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.25 -10.52 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008079428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.856 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.62 seconds