Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38238 * 119.99678 * 2 1 4 4 C 1.38234 * 119.99353 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00486 * 359.97438 * 4 3 2 6 6 S 1.76195 * 120.00048 * 179.97438 * 5 4 3 7 7 O 1.42104 * 106.40530 * 336.45758 * 6 5 4 8 8 O 1.42103 * 106.40440 * 203.53942 * 6 5 4 9 9 N 1.65598 * 107.21790 * 89.99978 * 6 5 4 10 10 N 1.40100 * 120.00095 * 60.00026 * 9 6 5 11 11 C 1.29812 * 119.99843 * 180.02562 * 10 9 6 12 12 C 1.47391 * 119.99687 * 180.02562 * 11 10 9 13 13 C 1.39798 * 120.08154 * 179.97438 * 12 11 10 14 14 C 1.37735 * 119.90644 * 179.97438 * 13 12 11 15 15 C 1.39070 * 120.08947 * 359.97438 * 14 13 12 16 16 O 1.35670 * 119.91119 * 180.02562 * 15 14 13 17 17 C 1.34813 * 117.00020 * 354.44576 * 16 15 14 18 18 H 1.07999 * 120.00226 * 5.06249 * 17 16 15 19 19 C 1.38615 * 119.99995 * 185.05734 * 17 16 15 20 20 N 1.31580 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00340 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46980 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47542 * 119.99947 * 21 19 17 24 24 H 1.48506 * 109.47017 * 240.00324 * 21 19 17 25 25 C 1.39065 * 120.17448 * 0.02562 * 15 14 13 26 26 C 1.37737 * 120.08549 * 0.02562 * 25 15 14 27 27 C 1.38239 * 119.99903 * 0.25120 * 5 4 3 28 28 C 1.38228 * 120.00111 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47243 * 90.00494 * 1 2 3 30 30 H 1.08997 * 109.47294 * 210.00113 * 1 2 3 31 31 H 1.08997 * 109.47323 * 330.00646 * 1 2 3 32 32 H 1.07994 * 120.00337 * 359.97131 * 3 2 1 33 33 H 1.08000 * 119.99499 * 179.97438 * 4 3 2 34 34 H 0.97004 * 120.00089 * 239.99373 * 9 6 5 35 35 H 1.08001 * 120.00258 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.04453 * 0.24984 * 13 12 11 37 37 H 1.08001 * 119.95213 * 180.02562 * 14 13 12 38 38 H 0.97002 * 120.00568 * 179.97438 * 20 19 17 39 39 H 1.07996 * 119.95267 * 179.97438 * 25 15 14 40 40 H 1.08002 * 120.04216 * 180.02562 * 26 25 15 41 41 H 1.07996 * 119.99887 * 179.72780 * 27 5 4 42 42 H 1.08006 * 119.99953 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0336 0.0000 0.0016 7 8 6.4350 1.2493 -0.5440 8 8 6.4350 -1.2502 -0.5417 9 7 6.5238 0.0015 1.5834 10 7 6.1517 -1.0485 2.4330 11 6 6.5356 -1.0471 3.6731 12 6 6.1446 -2.1520 4.5668 13 6 6.5575 -2.1525 5.9024 14 6 6.1896 -3.1867 6.7345 15 6 5.4081 -4.2290 6.2477 16 8 5.0474 -5.2455 7.0707 17 6 5.5730 -5.2438 8.3121 18 1 6.1826 -4.4146 8.6393 19 6 5.3308 -6.3064 9.1687 20 7 4.5884 -7.3169 8.7699 21 14 6.0585 -6.3039 10.8891 22 1 6.8492 -5.0630 11.0903 23 1 4.9631 -6.3612 11.8900 24 1 6.9424 -7.4857 11.0544 25 6 4.9954 -4.2320 4.9197 26 6 5.3600 -3.2021 4.0810 27 6 3.5805 -1.1972 -0.0031 28 6 2.1982 -1.1971 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6582 2.1325 -0.0005 33 1 4.1204 2.1325 0.0001 34 1 7.0687 0.7293 1.9217 35 1 7.1421 -0.2367 4.0497 36 1 7.1603 -1.3410 6.2823 37 1 6.5078 -3.1876 7.7666 38 1 4.4192 -8.0607 9.3691 39 1 4.3890 -5.0434 4.5454 40 1 5.0388 -3.2049 3.0499 41 1 4.1205 -2.1324 -0.0067 42 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008079428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -39.154030 kcal Electronic energy + Delta-G solvation = -27859.918870 eV Core-core repulsion = 23704.516123 eV Total energy + Delta-G solvation = -4155.402747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.77525 -40.31006 -38.79880 -38.46561 -37.41946 -37.12987 -34.35975 -34.00807 -32.90991 -32.06468 -31.87084 -29.64670 -28.23736 -27.44760 -24.36302 -23.88614 -23.53910 -22.94667 -21.67473 -20.74095 -19.91111 -19.23083 -19.04890 -18.51474 -17.96161 -16.91070 -16.54241 -16.39074 -16.26810 -15.96130 -15.85974 -15.55908 -15.44912 -15.11207 -14.78544 -14.55044 -14.47272 -14.37984 -14.07120 -13.65618 -13.52020 -13.40668 -13.31309 -13.25496 -13.16804 -13.13853 -13.04092 -12.61396 -12.59812 -12.39845 -12.13216 -12.06430 -11.83608 -11.40279 -11.11173 -10.95765 -10.44140 -10.10893 -10.06026 -9.80982 -8.73707 -8.47637 -6.14534 -0.86283 -0.22969 0.07371 0.29766 0.65176 1.39124 1.41298 1.54813 1.57170 1.64891 2.18586 2.37285 2.67805 2.89500 3.12270 3.22448 3.47871 3.54911 3.78899 3.84185 3.89388 3.91623 4.19755 4.21982 4.31054 4.33307 4.55917 4.64857 4.66569 4.68990 4.77728 4.81444 4.97623 4.99779 5.03264 5.06047 5.09011 5.21076 5.22831 5.31364 5.46810 5.60033 5.69046 5.70947 5.86178 6.02629 6.14765 6.89194 6.97220 7.75529 8.75122 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002074 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.147660 B =13496.527341 C =14776.003426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.149 4.149 4 C -0.029 4.029 5 C -0.686 4.686 6 S 2.738 3.262 7 O -0.970 6.970 8 O -0.980 6.980 9 N -0.963 5.963 10 N -0.276 5.276 11 C 0.164 3.836 12 C -0.152 4.152 13 C -0.020 4.020 14 C -0.247 4.247 15 C 0.134 3.866 16 O -0.225 6.225 17 C -0.411 4.411 18 H 0.111 0.889 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.246 1.246 23 H -0.271 1.271 24 H -0.272 1.272 25 C -0.212 4.212 26 C -0.029 4.029 27 C -0.022 4.022 28 C -0.154 4.154 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.412 0.588 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.273 0.727 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 20.372 -13.946 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.032 4.032 3 C -0.168 4.168 4 C -0.048 4.048 5 C -0.776 4.776 6 S 2.830 3.170 7 O -0.959 6.959 8 O -0.969 6.969 9 N -0.807 5.807 10 N -0.085 5.085 11 C -0.047 4.047 12 C -0.156 4.156 13 C -0.040 4.040 14 C -0.266 4.266 15 C 0.081 3.919 16 O -0.130 6.130 17 C -0.487 4.487 18 H 0.128 0.872 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.839 3.161 22 H -0.169 1.169 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.232 4.232 26 C -0.049 4.049 27 C -0.041 4.041 28 C -0.173 4.173 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.250 0.750 35 H 0.177 0.823 36 H 0.182 0.818 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.875 19.526 -15.560 25.132 hybrid contribution 0.223 0.107 1.627 1.646 sum -2.652 19.634 -13.932 24.220 Atomic orbital electron populations 1.21022 0.88449 1.04473 1.04005 1.20700 0.98154 0.92969 0.91374 1.21524 0.93785 0.99236 1.02220 1.21187 0.95683 0.96412 0.91529 1.30449 1.25404 1.00433 1.21316 1.00426 0.73839 0.72297 0.70480 1.93596 1.82773 1.44369 1.75164 1.93548 1.81607 1.45424 1.76364 1.57064 1.65141 1.29995 1.28490 1.74621 1.20360 1.07714 1.05776 1.24494 0.94343 0.96504 0.89330 1.18176 1.07075 0.96615 0.93691 1.21214 0.95234 0.96549 0.91028 1.21226 1.06480 0.96981 1.01928 1.20114 0.92450 0.88393 0.90893 1.83931 1.62199 1.42608 1.24215 1.21960 1.32086 1.07645 0.87037 0.87199 1.26625 0.96988 0.93770 1.04666 1.70201 1.37636 1.09161 1.38618 0.84512 0.78009 0.79540 0.74082 1.16889 1.19568 1.19694 1.20339 1.08799 1.02662 0.91376 1.21099 0.93795 0.91205 0.98840 1.21078 0.95579 0.96689 0.90785 1.21500 0.93809 0.99469 1.02505 0.89017 0.90413 0.89629 0.82318 0.82939 0.74958 0.82263 0.81823 0.85173 0.91784 0.86878 0.84364 0.84525 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.03 -0.50 5.88 -19.87 -0.12 -0.62 16 3 C -0.15 -2.28 9.70 22.27 0.22 -2.07 16 4 C -0.03 -0.53 9.52 22.27 0.21 -0.31 16 5 C -0.69 -15.15 5.97 22.27 0.13 -15.02 16 6 S 2.74 64.46 5.93 -56.49 -0.33 64.13 16 7 O -0.97 -24.38 17.28 -128.00 -2.21 -26.59 16 8 O -0.98 -30.14 17.28 -128.00 -2.21 -32.36 16 9 N -0.96 -19.41 6.77 37.02 0.25 -19.16 16 10 N -0.28 -6.69 10.59 -52.21 -0.55 -7.25 16 11 C 0.16 3.54 10.75 87.40 0.94 4.48 16 12 C -0.15 -4.31 5.87 -20.12 -0.12 -4.42 16 13 C -0.02 -0.57 9.78 22.53 0.22 -0.35 16 14 C -0.25 -9.46 9.15 22.35 0.20 -9.25 16 15 C 0.13 6.22 6.65 22.67 0.15 6.37 16 16 O -0.22 -12.83 9.75 -21.69 -0.21 -13.04 16 17 C -0.41 -22.55 9.48 67.91 0.64 -21.91 16 18 H 0.11 5.38 5.19 -2.91 -0.02 5.37 16 19 C -0.02 -1.22 5.49 84.82 0.47 -0.75 16 20 N -0.92 -54.62 13.67 21.61 0.30 -54.33 16 21 Si 1.02 40.66 29.55 68.60 2.03 42.69 16 22 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 23 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 25 C -0.21 -8.67 9.97 22.35 0.22 -8.45 16 26 C -0.03 -0.98 9.57 22.53 0.22 -0.76 16 27 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16 28 C -0.15 -2.91 9.70 22.27 0.22 -2.69 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 32 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.15 2.20 7.62 -2.91 -0.02 2.18 16 34 H 0.41 5.58 8.79 -217.35 -1.91 3.67 16 35 H 0.16 2.02 8.02 -2.91 -0.02 2.00 16 36 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.13 4.97 5.62 -2.91 -0.02 4.96 16 38 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.14 4.17 7.55 -2.91 -0.02 4.15 16 41 H 0.14 3.15 7.61 -2.91 -0.02 3.13 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -78.14 384.41 0.75 -77.39 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.83 Total: 25.03 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 4.53 Total: -56.50 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -0.01 Total: -80.74 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: -4.64 Total: -71.99 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 64.46 SS G_CDS: -0.33 Total: 64.13 kcal Total: -78.14 0.75 -77.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008079428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.233 kcal (2) G-P(sol) polarization free energy of solvation -78.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds