Wall clock time and date at job start Tue Mar 31 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38300 * 119.96235 * 2 1 4 4 C 1.38257 * 120.12827 * 180.02562 * 3 2 1 5 5 C 1.38146 * 120.06825 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.03581 * 180.02562 * 5 4 3 7 7 C 1.38812 * 119.93108 * 359.97438 * 5 4 3 8 8 N 1.40200 * 120.06341 * 179.97438 * 7 5 4 9 9 C 1.37850 * 126.53578 * 244.99668 * 8 7 5 10 10 C 1.34387 * 106.95089 * 180.02562 * 9 8 7 11 11 N 1.34384 * 108.40542 * 0.02562 * 10 9 8 12 12 C 1.31277 * 109.35525 * 359.97438 * 11 10 9 13 13 S 1.76202 * 125.81941 * 179.97438 * 12 11 10 14 14 C 1.80998 * 99.99875 * 0.02562 * 13 12 11 15 15 C 1.50706 * 109.47048 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99551 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00112 * 179.97438 * 15 14 13 18 18 C 1.46505 * 120.00007 * 359.97438 * 17 15 14 19 19 C 1.46497 * 120.00160 * 180.02562 * 17 15 14 20 20 C 1.50692 * 109.47497 * 89.99704 * 19 17 15 21 21 H 1.08003 * 120.00384 * 0.02562 * 20 19 17 22 22 C 1.37881 * 120.00125 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99943 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00027 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47478 * 59.99664 * 24 22 20 26 26 H 1.48497 * 109.47141 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46841 * 299.99666 * 24 22 20 28 28 C 1.38096 * 119.96730 * 180.25530 * 2 1 3 29 29 H 1.09001 * 109.47384 * 90.00709 * 1 2 3 30 30 H 1.09005 * 109.46711 * 210.00070 * 1 2 3 31 31 H 1.08997 * 109.47296 * 329.99935 * 1 2 3 32 32 H 1.07997 * 119.94038 * 359.97157 * 3 2 1 33 33 H 1.08002 * 119.96781 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47079 * 269.97456 * 6 5 4 35 35 H 1.09004 * 109.47089 * 29.97447 * 6 5 4 36 36 H 1.09000 * 109.46945 * 149.97425 * 6 5 4 37 37 H 1.08009 * 126.52739 * 0.02562 * 9 8 7 38 38 H 1.08001 * 125.80097 * 180.26821 * 10 9 8 39 39 H 1.08999 * 109.47240 * 299.99902 * 14 13 12 40 40 H 1.09001 * 109.47618 * 59.99677 * 14 13 12 41 41 H 1.09002 * 109.46840 * 90.00068 * 18 17 15 42 42 H 1.08999 * 109.47230 * 210.00208 * 18 17 15 43 43 H 1.08996 * 109.47083 * 330.00004 * 18 17 15 44 44 H 1.08998 * 109.47037 * 210.00426 * 19 17 15 45 45 H 1.09004 * 109.46704 * 329.99395 * 19 17 15 46 46 H 0.96993 * 119.99764 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.03682 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2022 -0.0005 5 6 4.2759 0.0086 -0.0016 6 6 5.7829 0.0138 -0.0016 7 6 3.5853 -1.1955 -0.0016 8 7 4.2885 -2.4084 -0.0032 9 6 4.2939 -3.3525 -1.0077 10 6 5.0936 -4.3529 -0.6008 11 7 5.5717 -4.0454 0.6169 12 6 5.0968 -2.8796 0.9891 13 16 5.4436 -2.0633 2.5117 14 6 6.5546 -3.2736 3.2712 15 6 6.9936 -2.7732 4.6233 16 8 6.5942 -1.7040 5.0331 17 7 7.8291 -3.5145 5.3774 18 6 8.3102 -4.8070 4.8830 19 6 8.2555 -3.0285 6.6920 20 6 7.2874 -3.5073 7.7429 21 1 6.4394 -4.1134 7.4600 22 6 7.4840 -3.1715 9.0656 23 7 8.5168 -2.4337 9.4103 24 14 6.2843 -3.7656 10.3684 25 1 6.2564 -5.2503 10.3755 26 1 6.7165 -3.2728 11.7009 27 1 4.9266 -3.2465 10.0645 28 6 2.1968 -1.1963 -0.0053 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6561 2.1325 -0.0005 33 1 4.1171 2.1394 -0.0010 34 1 6.1462 0.0156 -1.0293 35 1 6.1431 0.9049 0.5126 36 1 6.1492 -0.8751 0.5118 37 1 3.7575 -3.2986 -1.9436 38 1 5.3175 -5.2498 -1.1593 39 1 6.0327 -4.2235 3.3868 40 1 7.4283 -3.4142 2.6350 41 1 9.2356 -4.6612 4.3257 42 1 8.4949 -5.4727 5.7261 43 1 7.5582 -5.2487 4.2293 44 1 9.2518 -3.4101 6.9149 45 1 8.2767 -1.9386 6.6870 46 1 8.6553 -2.1978 10.3408 47 1 1.6569 -2.1317 -0.0091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008345188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:23 Heat of formation + Delta-G solvation = 57.873126 kcal Electronic energy + Delta-G solvation = -28809.205958 eV Core-core repulsion = 24891.562381 eV Total energy + Delta-G solvation = -3917.643577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.26180 -39.68491 -38.94723 -34.91610 -34.87832 -33.48620 -32.66852 -30.40090 -29.89111 -29.63300 -29.33719 -27.38783 -25.67065 -25.30272 -23.68298 -22.80863 -22.19634 -21.34443 -21.03689 -18.74767 -18.06937 -16.62395 -16.56778 -16.35976 -16.28155 -15.92739 -15.24749 -15.07963 -14.79953 -14.60184 -14.52816 -14.23359 -14.06028 -13.79553 -13.58327 -13.34255 -13.18547 -13.11805 -12.88586 -12.60570 -12.29994 -12.17619 -11.94642 -11.94094 -11.84852 -11.71381 -11.55119 -11.21125 -10.90635 -10.61128 -10.46213 -10.36423 -10.16558 -10.11202 -9.66132 -9.41971 -9.16657 -9.11461 -8.76564 -8.43233 -7.72361 -7.35485 -6.04571 -4.09466 0.69564 0.93313 1.18813 1.75880 2.18809 2.66563 2.89596 3.22013 3.26314 3.33269 3.37221 3.41655 3.91708 4.37957 4.42132 4.44972 4.53947 4.60693 4.79706 4.91456 4.99163 5.06800 5.16072 5.22331 5.25479 5.30132 5.31852 5.35146 5.40196 5.44387 5.49576 5.52322 5.66748 5.72271 5.81199 5.93883 5.96292 5.98709 6.13269 6.17394 6.22551 6.42093 6.50905 6.96450 6.98325 7.40250 7.47606 7.71706 7.91012 8.21473 8.29649 8.82842 8.98879 9.55439 11.03606 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002472 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.618920 B =11324.354284 C =12304.192224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.103 4.103 4 C -0.105 4.105 5 C -0.065 4.065 6 C -0.131 4.131 7 C 0.108 3.892 8 N -0.401 5.401 9 C -0.046 4.046 10 C -0.015 4.015 11 N -0.488 5.488 12 C 0.188 3.812 13 S 0.065 5.935 14 C -0.138 4.138 15 C 0.521 3.479 16 O -0.529 6.529 17 N -0.593 5.593 18 C 0.080 3.920 19 C 0.246 3.754 20 C -0.528 4.528 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 C -0.100 4.100 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.046 0.954 46 H 0.264 0.736 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 2.478 -25.595 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.066 4.066 6 C -0.188 4.188 7 C 0.018 3.982 8 N -0.083 5.083 9 C -0.179 4.179 10 C -0.164 4.164 11 N -0.210 5.210 12 C -0.180 4.180 13 S 0.295 5.705 14 C -0.290 4.290 15 C 0.305 3.695 16 O -0.407 6.407 17 N -0.325 5.325 18 C -0.065 4.065 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.119 4.119 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.193 0.807 38 H 0.192 0.808 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.955 3.742 -24.281 26.899 hybrid contribution -0.725 -1.396 -0.352 1.612 sum -11.680 2.346 -24.633 27.362 Atomic orbital electron populations 1.20795 0.90418 1.03320 1.02483 1.19769 0.96445 0.92282 0.99921 1.21188 0.94131 0.97812 0.98999 1.21000 0.94065 0.97264 1.00030 1.19986 0.96989 0.91500 0.98159 1.21091 0.90144 1.05013 1.02556 1.17477 0.90668 0.83473 1.06630 1.42811 1.36102 1.14950 1.14469 1.22853 1.07899 0.91530 0.95638 1.22306 1.00046 1.00181 0.93837 1.70854 1.25567 1.10910 1.13686 1.25964 0.98206 0.95892 0.97966 1.86429 1.58223 1.22144 1.03683 1.23803 1.03182 1.02817 0.99197 1.19399 0.80180 0.85347 0.84604 1.90712 1.55251 1.22186 1.72515 1.48071 1.45623 1.19019 1.19828 1.21726 0.98567 0.86060 1.00100 1.19354 0.95199 0.96676 0.76067 1.21386 1.10618 1.33009 0.91705 0.92435 1.24931 0.95612 0.94983 0.98508 1.69922 1.28393 1.36996 1.18052 0.86546 0.81477 0.78948 0.80403 1.20221 1.21152 1.20113 1.20981 0.91797 0.98787 1.00353 0.90978 0.91290 0.91050 0.85233 0.84795 0.91080 0.90290 0.89990 0.80691 0.80839 0.86443 0.86536 0.93359 0.90431 0.92160 0.94664 0.93639 0.92617 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.01 0.36 -0.32 16 2 C -0.08 -0.72 5.88 -104.65 -0.62 -1.33 16 3 C -0.10 -0.85 9.70 -39.55 -0.38 -1.23 16 4 C -0.11 -0.96 9.70 -39.61 -0.38 -1.34 16 5 C -0.06 -0.72 5.74 -104.44 -0.60 -1.32 16 6 C -0.13 -1.43 9.54 36.00 0.34 -1.08 16 7 C 0.11 1.27 5.47 -83.59 -0.46 0.81 16 8 N -0.40 -5.08 2.45 -60.74 -0.15 -5.23 16 9 C -0.05 -0.49 11.50 -16.20 -0.19 -0.68 16 10 C -0.01 -0.17 11.84 -17.79 -0.21 -0.38 16 11 N -0.49 -7.16 10.60 -13.38 -0.14 -7.31 16 12 C 0.19 2.78 6.47 -88.49 -0.57 2.21 16 13 S 0.06 1.06 19.06 -107.50 -2.05 -0.98 16 14 C -0.14 -2.28 4.23 36.01 0.15 -2.13 16 15 C 0.52 11.08 7.69 -10.98 -0.08 10.99 16 16 O -0.53 -13.40 15.44 5.56 0.09 -13.31 16 17 N -0.59 -12.76 2.86 -182.96 -0.52 -13.28 16 18 C 0.08 1.28 10.24 59.85 0.61 1.90 16 19 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 20 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 21 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 24 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.10 -1.02 9.57 -39.41 -0.38 -1.39 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.08 1.07 4.26 -51.93 -0.22 0.84 16 37 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.12 1.84 7.40 -51.92 -0.38 1.45 16 40 H 0.12 1.71 8.11 -51.92 -0.42 1.29 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 43 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 44 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -35.01 407.01 -10.55 -45.56 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.77 Total: -0.04 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.85 Total: -2.60 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.08 Total: -51.76 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.05 Total: -0.98 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.01 -10.55 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008345188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.430 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds