Wall clock time and date at job start Tue Mar 31 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38300 * 119.96235 * 2 1 4 4 C 1.38257 * 120.12827 * 180.02562 * 3 2 1 5 5 C 1.38146 * 120.06825 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.03581 * 180.02562 * 5 4 3 7 7 C 1.38812 * 119.93108 * 359.97438 * 5 4 3 8 8 N 1.40200 * 120.06341 * 179.97438 * 7 5 4 9 9 C 1.37850 * 126.53578 * 244.99668 * 8 7 5 10 10 C 1.34387 * 106.95089 * 180.02562 * 9 8 7 11 11 N 1.34384 * 108.40542 * 0.02562 * 10 9 8 12 12 C 1.31277 * 109.35525 * 359.97438 * 11 10 9 13 13 S 1.76202 * 125.81941 * 179.97438 * 12 11 10 14 14 C 1.80998 * 99.99875 * 0.02562 * 13 12 11 15 15 C 1.50706 * 109.47048 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99551 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00112 * 179.97438 * 15 14 13 18 18 C 1.46505 * 120.00007 * 359.97438 * 17 15 14 19 19 C 1.46497 * 120.00160 * 180.02562 * 17 15 14 20 20 C 1.50692 * 109.47497 * 89.99704 * 19 17 15 21 21 H 1.08003 * 120.00384 * 0.02562 * 20 19 17 22 22 C 1.37881 * 120.00125 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99943 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00027 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47478 * 59.99664 * 24 22 20 26 26 H 1.48497 * 109.47141 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46841 * 299.99666 * 24 22 20 28 28 C 1.38096 * 119.96730 * 180.25530 * 2 1 3 29 29 H 1.09001 * 109.47384 * 90.00709 * 1 2 3 30 30 H 1.09005 * 109.46711 * 210.00070 * 1 2 3 31 31 H 1.08997 * 109.47296 * 329.99935 * 1 2 3 32 32 H 1.07997 * 119.94038 * 359.97157 * 3 2 1 33 33 H 1.08002 * 119.96781 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47079 * 269.97456 * 6 5 4 35 35 H 1.09004 * 109.47089 * 29.97447 * 6 5 4 36 36 H 1.09000 * 109.46945 * 149.97425 * 6 5 4 37 37 H 1.08009 * 126.52739 * 0.02562 * 9 8 7 38 38 H 1.08001 * 125.80097 * 180.26821 * 10 9 8 39 39 H 1.08999 * 109.47240 * 299.99902 * 14 13 12 40 40 H 1.09001 * 109.47618 * 59.99677 * 14 13 12 41 41 H 1.09002 * 109.46840 * 90.00068 * 18 17 15 42 42 H 1.08999 * 109.47230 * 210.00208 * 18 17 15 43 43 H 1.08996 * 109.47083 * 330.00004 * 18 17 15 44 44 H 1.08998 * 109.47037 * 210.00426 * 19 17 15 45 45 H 1.09004 * 109.46704 * 329.99395 * 19 17 15 46 46 H 0.96993 * 119.99764 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.03682 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2022 -0.0005 5 6 4.2759 0.0086 -0.0016 6 6 5.7829 0.0138 -0.0016 7 6 3.5853 -1.1955 -0.0016 8 7 4.2885 -2.4084 -0.0032 9 6 4.2939 -3.3525 -1.0077 10 6 5.0936 -4.3529 -0.6008 11 7 5.5717 -4.0454 0.6169 12 6 5.0968 -2.8796 0.9891 13 16 5.4436 -2.0633 2.5117 14 6 6.5546 -3.2736 3.2712 15 6 6.9936 -2.7732 4.6233 16 8 6.5942 -1.7040 5.0331 17 7 7.8291 -3.5145 5.3774 18 6 8.3102 -4.8070 4.8830 19 6 8.2555 -3.0285 6.6920 20 6 7.2874 -3.5073 7.7429 21 1 6.4394 -4.1134 7.4600 22 6 7.4840 -3.1715 9.0656 23 7 8.5168 -2.4337 9.4103 24 14 6.2843 -3.7656 10.3684 25 1 6.2564 -5.2503 10.3755 26 1 6.7165 -3.2728 11.7009 27 1 4.9266 -3.2465 10.0645 28 6 2.1968 -1.1963 -0.0053 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6561 2.1325 -0.0005 33 1 4.1171 2.1394 -0.0010 34 1 6.1462 0.0156 -1.0293 35 1 6.1431 0.9049 0.5126 36 1 6.1492 -0.8751 0.5118 37 1 3.7575 -3.2986 -1.9436 38 1 5.3175 -5.2498 -1.1593 39 1 6.0327 -4.2235 3.3868 40 1 7.4283 -3.4142 2.6350 41 1 9.2356 -4.6612 4.3257 42 1 8.4949 -5.4727 5.7261 43 1 7.5582 -5.2487 4.2293 44 1 9.2518 -3.4101 6.9149 45 1 8.2767 -1.9386 6.6870 46 1 8.6553 -2.1978 10.3408 47 1 1.6569 -2.1317 -0.0091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008345188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:22 Heat of formation + Delta-G solvation = 39.081899 kcal Electronic energy + Delta-G solvation = -28810.020807 eV Core-core repulsion = 24891.562381 eV Total energy + Delta-G solvation = -3918.458426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.17320 -40.68611 -40.40974 -36.70622 -35.66682 -34.78789 -34.26233 -31.80159 -30.89681 -30.40650 -30.17232 -29.18632 -27.31737 -25.98371 -24.86291 -24.42478 -23.09240 -22.20923 -21.94075 -20.25377 -19.06061 -18.72468 -18.00585 -17.49765 -17.37464 -16.91340 -16.72388 -16.64356 -16.05393 -15.66656 -15.44327 -15.33643 -14.85839 -14.77886 -14.68957 -14.43775 -14.30842 -14.12727 -13.91436 -13.87326 -13.61921 -13.54341 -13.45893 -13.15029 -12.93580 -12.81572 -12.62971 -12.55669 -12.43140 -12.22495 -12.20915 -11.75563 -11.68118 -11.35530 -11.04058 -10.87399 -10.64741 -10.39413 -9.91718 -9.52624 -9.49429 -8.49997 -8.23622 -6.38285 -0.06861 0.02477 0.22782 0.84369 0.98771 1.36627 1.40919 1.47948 1.61199 1.78319 1.96204 2.25159 2.41573 2.51751 3.06292 3.47934 3.69305 3.72303 3.75571 3.95255 3.96997 4.15353 4.20936 4.25379 4.29002 4.42072 4.48643 4.51638 4.60258 4.63734 4.68357 4.74452 4.81726 4.83208 4.92241 4.96782 5.01089 5.08611 5.19573 5.23860 5.25023 5.41199 5.48247 5.50962 5.63917 5.74325 5.77184 6.03210 6.11408 6.56327 6.70329 6.77189 7.17480 7.34773 8.83624 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002472 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.618920 B =11324.354284 C =12304.192224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.102 4.102 4 C -0.110 4.110 5 C -0.084 4.084 6 C -0.128 4.128 7 C 0.083 3.917 8 N -0.397 5.397 9 C -0.034 4.034 10 C -0.029 4.029 11 N -0.506 5.506 12 C 0.169 3.831 13 S 0.032 5.968 14 C -0.116 4.116 15 C 0.514 3.486 16 O -0.579 6.579 17 N -0.600 5.600 18 C 0.075 3.925 19 C 0.260 3.740 20 C -0.546 4.546 21 H 0.053 0.947 22 C 0.009 3.991 23 N -0.927 5.927 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.277 1.277 27 H -0.278 1.278 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.210 0.790 38 H 0.203 0.797 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.002 0.998 46 H 0.268 0.732 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 1.589 -27.403 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.129 4.129 5 C -0.085 4.085 6 C -0.185 4.185 7 C -0.007 4.007 8 N -0.079 5.079 9 C -0.167 4.167 10 C -0.178 4.178 11 N -0.229 5.229 12 C -0.200 4.200 13 S 0.263 5.737 14 C -0.268 4.268 15 C 0.301 3.699 16 O -0.460 6.460 17 N -0.331 5.331 18 C -0.067 4.067 19 C 0.139 3.861 20 C -0.584 4.584 21 H 0.071 0.929 22 C -0.190 4.190 23 N -0.567 5.567 24 Si 0.791 3.209 25 H -0.185 1.185 26 H -0.202 1.202 27 H -0.204 1.204 28 C -0.129 4.129 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.219 0.781 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.048 0.952 45 H 0.020 0.980 46 H 0.077 0.923 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.823 2.820 -26.116 29.230 hybrid contribution -0.176 -1.077 0.068 1.093 sum -12.998 1.743 -26.048 29.163 Atomic orbital electron populations 1.20852 0.88478 1.03882 1.03637 1.20129 0.97875 0.91869 0.98664 1.21558 0.93901 0.98905 0.97627 1.21294 0.94796 0.97351 0.99420 1.20123 0.96965 0.92155 0.99263 1.21033 0.90593 1.04106 1.02811 1.17740 0.91357 0.83313 1.08259 1.42937 1.35363 1.15406 1.14186 1.23485 1.06840 0.90366 0.95962 1.22855 1.00207 1.01552 0.93173 1.70783 1.26032 1.10941 1.15157 1.25458 1.00223 0.96458 0.97868 1.86476 1.58805 1.22943 1.05525 1.23536 1.04121 1.02813 0.96294 1.20112 0.79230 0.84575 0.85991 1.90678 1.56919 1.24400 1.74014 1.48068 1.45717 1.20894 1.18401 1.22017 1.00644 0.83466 1.00616 1.18844 0.94778 0.94089 0.78406 1.21655 1.10864 1.33182 0.92730 0.92882 1.25841 0.97373 0.94954 1.00811 1.70037 1.30003 1.37864 1.18747 0.85482 0.78586 0.79242 0.77611 1.18471 1.20183 1.20365 1.21129 0.91283 0.99731 1.00785 0.89421 0.91349 0.89897 0.82475 0.83020 0.90226 0.89886 0.92122 0.77361 0.78062 0.85211 0.84496 0.90627 0.90812 0.89241 0.95181 0.97960 0.92299 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.36 16 2 C -0.08 -1.30 5.88 -19.88 -0.12 -1.42 16 3 C -0.10 -1.46 9.70 22.29 0.22 -1.24 16 4 C -0.11 -1.88 9.70 22.25 0.22 -1.66 16 5 C -0.08 -1.82 5.74 -19.75 -0.11 -1.93 16 6 C -0.13 -2.82 9.54 71.24 0.68 -2.14 16 7 C 0.08 1.90 5.47 38.09 0.21 2.11 16 8 N -0.40 -9.76 2.45 -346.07 -0.85 -10.61 16 9 C -0.03 -0.65 11.50 82.87 0.95 0.30 16 10 C -0.03 -0.62 11.84 83.42 0.99 0.36 16 11 N -0.51 -14.31 10.60 -196.23 -2.08 -16.39 16 12 C 0.17 4.93 6.47 179.60 1.16 6.09 16 13 S 0.03 1.09 19.06 -56.49 -1.08 0.01 16 14 C -0.12 -3.83 4.23 71.24 0.30 -3.53 16 15 C 0.51 22.46 7.69 87.66 0.67 23.13 16 16 O -0.58 -30.80 15.44 -3.02 -0.05 -30.84 16 17 N -0.60 -26.23 2.86 -851.14 -2.43 -28.66 16 18 C 0.07 2.32 10.24 127.77 1.31 3.63 16 19 C 0.26 14.22 5.16 85.63 0.44 14.66 16 20 C -0.55 -31.89 9.39 25.60 0.24 -31.65 16 21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 22 C 0.01 0.55 5.46 84.65 0.46 1.01 16 23 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 24 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 C -0.11 -2.12 9.57 22.38 0.21 -1.90 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 31 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 32 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 36 H 0.06 1.62 4.26 -2.39 -0.01 1.61 16 37 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.13 3.94 7.40 -2.40 -0.02 3.92 16 40 H 0.14 3.91 8.11 -2.39 -0.02 3.89 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 43 H 0.09 2.26 6.44 -2.39 -0.02 2.24 16 44 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 45 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -79.07 407.01 5.35 -73.72 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.98 Total: 16.04 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 8.55 Total: 5.46 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -5.07 Total: -111.80 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.08 Total: 0.01 kcal Total: -79.07 5.35 -73.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008345188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.798 kcal (2) G-P(sol) polarization free energy of solvation -79.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds