Wall clock time and date at job start Tue Mar 31 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47173 * 2 1 4 4 H 1.09001 * 109.46766 * 55.00387 * 3 2 1 5 5 O 1.42895 * 109.46937 * 294.99812 * 3 2 1 6 6 C 1.35923 * 116.99610 * 104.31571 * 5 3 2 7 7 C 1.38727 * 120.03925 * 174.33182 * 6 5 3 8 8 C 1.38144 * 119.95199 * 179.97438 * 7 6 5 9 9 C 1.38359 * 120.04589 * 0.27595 * 8 7 6 10 10 Cl 1.73602 * 119.95844 * 179.69733 * 9 8 7 11 11 C 1.38370 * 120.08585 * 359.44819 * 9 8 7 12 12 C 1.38140 * 120.04016 * 0.55049 * 11 9 8 13 13 C 1.50702 * 109.46927 * 174.99800 * 3 2 1 14 14 O 1.21282 * 119.99811 * 120.00090 * 13 3 2 15 15 N 1.34775 * 120.00221 * 299.99789 * 13 3 2 16 16 C 1.39238 * 120.00256 * 185.58819 * 15 13 3 17 17 C 1.39474 * 119.83822 * 215.36292 * 16 15 13 18 18 C 1.36369 * 120.17317 * 179.76021 * 17 16 15 19 19 C 1.40876 * 119.82500 * 0.51233 * 18 17 16 20 20 C 1.41152 * 120.16422 * 179.71876 * 19 18 17 21 21 H 1.08002 * 120.00356 * 159.00933 * 20 19 18 22 22 C 1.39907 * 120.00025 * 339.01269 * 20 19 18 23 23 N 1.30877 * 120.00143 * 332.44962 * 22 20 19 24 24 Si 1.86806 * 120.00223 * 152.44758 * 22 20 19 25 25 H 1.48498 * 109.47146 * 94.98037 * 24 22 20 26 26 H 1.48501 * 109.47141 * 214.98522 * 24 22 20 27 27 H 1.48504 * 109.46860 * 334.98422 * 24 22 20 28 28 C 1.40866 * 119.67169 * 359.74163 * 19 18 17 29 29 C 1.36378 * 119.82892 * 359.97438 * 28 19 18 30 30 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47327 * 299.99882 * 1 2 3 32 32 H 1.09002 * 109.46822 * 60.00038 * 1 2 3 33 33 H 1.09002 * 109.47327 * 240.00118 * 2 1 3 34 34 H 1.09004 * 109.47229 * 120.00301 * 2 1 3 35 35 H 1.07993 * 120.02206 * 359.95177 * 7 6 5 36 36 H 1.08002 * 119.97278 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.98136 * 180.27593 * 11 9 8 38 38 H 1.07999 * 120.02294 * 179.70118 * 12 11 9 39 39 H 0.97005 * 120.00015 * 5.59721 * 15 13 3 40 40 H 1.08009 * 119.91187 * 0.02562 * 17 16 15 41 41 H 1.08005 * 120.09359 * 180.25060 * 18 17 16 42 42 H 0.96998 * 119.99934 * 180.02562 * 23 22 20 43 43 H 1.08003 * 120.08686 * 179.97438 * 28 19 18 44 44 H 1.07992 * 119.91359 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 0.6299 2.9639 -1.1619 7 6 0.2865 3.7070 -2.2819 8 6 -0.7631 4.6030 -2.2199 9 6 -1.4680 4.7637 -1.0402 10 17 -2.7816 5.8961 -0.9627 11 6 -1.1307 4.0193 0.0763 12 6 -0.0817 3.1222 0.0183 13 6 3.5419 1.4443 0.1239 14 8 4.2217 1.9435 -0.7477 15 7 4.1297 0.8912 1.2032 16 6 5.5076 0.9947 1.3753 17 6 6.2166 -0.0607 1.9484 18 6 7.5669 0.0315 2.1157 19 6 8.2439 1.2010 1.7178 20 6 9.6405 1.3065 1.8931 21 1 10.2063 2.0160 1.3075 22 6 10.2920 0.4918 2.8255 23 7 9.6449 0.0504 3.8739 24 14 12.0856 0.0340 2.5739 25 1 12.9481 0.9797 3.3269 26 1 12.3177 -1.3475 3.0667 27 1 12.4167 0.1060 1.1280 28 6 7.5202 2.2649 1.1446 29 6 6.1710 2.1557 0.9784 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.8396 3.5853 -3.2014 36 1 -1.0310 5.1814 -3.0918 37 1 -1.6849 4.1428 0.9950 38 1 0.1844 2.5449 0.8914 39 1 3.5929 0.4207 1.8601 40 1 5.6955 -0.9552 2.2567 41 1 8.1152 -0.7883 2.5560 42 1 10.0967 -0.5141 4.5205 43 1 8.0324 3.1648 0.8376 44 1 5.6147 2.9707 0.5395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008494234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:55 Heat of formation + Delta-G solvation = -32.848057 kcal Electronic energy + Delta-G solvation = -28204.851522 eV Core-core repulsion = 24113.104428 eV Total energy + Delta-G solvation = -4091.747095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.108 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.96415 -39.54813 -38.07646 -37.12101 -36.41806 -34.62957 -34.03602 -32.92232 -31.43370 -30.11595 -29.65591 -29.21290 -27.58340 -24.88036 -23.65631 -22.75022 -22.35056 -21.36840 -20.77347 -19.66730 -18.88619 -17.63577 -17.35875 -16.74562 -16.31067 -16.05599 -15.75991 -15.25359 -14.91689 -14.48501 -14.30440 -14.25692 -13.98454 -13.86006 -13.65643 -13.17880 -13.01305 -12.76651 -12.62215 -12.47800 -12.24271 -12.09827 -11.96495 -11.76839 -11.71023 -11.47546 -11.27592 -11.17301 -11.01020 -10.97137 -10.74105 -10.58638 -10.16526 -9.78792 -9.49804 -9.45527 -9.19113 -8.76873 -8.36390 -7.60845 -7.16000 -6.91954 -4.33036 0.87722 0.92581 1.87920 2.45265 2.62346 2.89587 3.02186 3.04658 3.08778 3.28041 3.31211 3.70972 3.85994 4.29373 4.39189 4.45572 4.52685 4.57778 4.76857 4.79290 4.90594 5.03509 5.16483 5.18976 5.36195 5.55903 5.56819 5.63959 5.67064 5.78438 5.88162 5.89985 5.97249 6.13092 6.22637 6.33730 6.69251 6.84922 6.95676 7.06153 7.09585 7.22441 7.51062 7.62234 7.82296 7.96639 8.18671 8.20234 8.50082 8.64520 8.79881 8.92943 10.00792 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.001778 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.816079 B =15747.280736 C =16281.697157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.064 3.936 4 H 0.104 0.896 5 O -0.275 6.275 6 C 0.144 3.856 7 C -0.139 4.139 8 C -0.069 4.069 9 C -0.078 4.078 10 Cl -0.076 7.076 11 C -0.067 4.067 12 C -0.204 4.204 13 C 0.494 3.506 14 O -0.510 6.510 15 N -0.643 5.643 16 C -0.020 4.020 17 C -0.103 4.103 18 C -0.166 4.166 19 C 0.110 3.890 20 C -0.458 4.458 21 H 0.081 0.919 22 C 0.082 3.918 23 N -0.776 5.776 24 Si 0.901 3.099 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.222 4.222 29 C -0.067 4.067 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.283 0.717 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.557 1.890 -4.215 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.004 3.996 4 H 0.121 0.879 5 O -0.187 6.187 6 C 0.098 3.902 7 C -0.158 4.158 8 C -0.087 4.087 9 C -0.104 4.104 10 Cl -0.048 7.048 11 C -0.085 4.085 12 C -0.223 4.223 13 C 0.278 3.722 14 O -0.384 6.384 15 N -0.287 5.287 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.186 4.186 19 C 0.108 3.892 20 C -0.486 4.486 21 H 0.099 0.901 22 C -0.138 4.138 23 N -0.399 5.399 24 Si 0.725 3.275 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.181 1.181 28 C -0.242 4.242 29 C -0.087 4.087 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.052 2.183 -4.787 21.700 hybrid contribution 0.348 -0.408 0.638 0.834 sum -20.704 1.775 -4.149 21.190 Atomic orbital electron populations 1.21869 0.94526 1.02597 1.02235 1.21965 0.97161 0.93842 1.04477 1.22524 0.94047 0.95266 0.87796 0.87890 1.86252 1.46897 1.53325 1.32177 1.19185 0.87423 0.89396 0.94186 1.20430 0.99342 0.97502 0.98495 1.20858 0.93854 0.97219 0.96799 1.20762 0.95165 0.98220 0.96291 1.98361 1.47418 1.60325 1.98647 1.20805 0.96238 0.93999 0.97493 1.21290 0.99004 1.03578 0.98385 1.20164 0.88653 0.80815 0.82542 1.90743 1.64369 1.44252 1.39039 1.42848 1.07676 1.55336 1.22886 1.17014 0.80835 0.97529 1.15786 1.20157 0.94802 0.95375 1.01957 1.20743 0.92502 0.98837 1.06487 1.17632 0.93040 0.90096 0.88481 1.19566 0.92720 1.18232 1.18109 0.90057 1.25966 1.00845 0.93758 0.93251 1.69905 1.39236 1.24488 1.06295 0.86413 0.82089 0.78634 0.80370 1.19450 1.19877 1.18140 1.20588 0.93060 0.99079 1.11436 1.20192 0.94732 0.95006 0.98803 0.91754 0.92404 0.92135 0.89798 0.89539 0.83983 0.84279 0.84684 0.84133 0.77235 0.89183 0.86758 0.90617 0.88668 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.65 37.16 0.32 -0.84 16 2 C -0.14 -1.28 5.58 -26.73 -0.15 -1.43 16 3 C 0.06 0.77 2.51 -27.88 -0.07 0.70 16 4 H 0.10 1.00 5.17 -51.93 -0.27 0.73 16 5 O -0.27 -3.74 9.03 -39.41 -0.36 -4.10 16 6 C 0.14 1.65 5.77 -39.22 -0.23 1.42 16 7 C -0.14 -1.44 9.99 -39.43 -0.39 -1.83 16 8 C -0.07 -0.62 9.82 -39.57 -0.39 -1.01 16 9 C -0.08 -0.72 6.32 -39.49 -0.25 -0.97 16 10 Cl -0.08 -0.66 28.95 -51.86 -1.50 -2.16 16 11 C -0.07 -0.58 9.82 -39.57 -0.39 -0.97 16 12 C -0.20 -1.92 7.86 -39.44 -0.31 -2.23 16 13 C 0.49 8.42 6.94 -10.99 -0.08 8.34 16 14 O -0.51 -11.20 14.33 -14.35 -0.21 -11.40 16 15 N -0.64 -10.77 5.21 -9.74 -0.05 -10.82 16 16 C -0.02 -0.43 6.24 -83.57 -0.52 -0.96 16 17 C -0.10 -2.28 9.90 -39.79 -0.39 -2.68 16 18 C -0.17 -4.16 8.70 -39.26 -0.34 -4.50 16 19 C 0.11 2.91 5.59 -106.80 -0.60 2.32 16 20 C -0.46 -11.95 8.98 -37.85 -0.34 -12.29 16 21 H 0.08 2.06 7.98 -52.49 -0.42 1.64 16 22 C 0.08 2.00 4.93 -17.33 -0.09 1.92 16 23 N -0.78 -19.21 11.35 55.55 0.63 -18.58 16 24 Si 0.90 18.02 29.64 -169.99 -5.04 12.98 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 27 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 28 C -0.22 -5.60 9.74 -39.26 -0.38 -5.98 16 29 C -0.07 -1.61 8.57 -39.79 -0.34 -1.95 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.36 7.16 -51.93 -0.37 -0.01 16 32 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.67 7.31 -51.93 -0.38 0.29 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.14 1.08 4.65 -52.49 -0.24 0.84 16 39 H 0.39 4.98 8.02 -40.82 -0.33 4.65 16 40 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.11 2.91 6.27 -52.48 -0.33 2.59 16 42 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 43 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 44 H 0.10 2.31 6.57 -52.49 -0.34 1.96 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -30.61 380.68 -10.86 -41.47 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.14 Total: 9.82 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -4.93 Total: -22.94 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.58 Total: -29.40 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.56 Total: -15.50 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.04 Total: 12.98 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.61 -10.86 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008494234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.621 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds