Wall clock time and date at job start Tue Mar 31 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47338 * 2 1 4 4 H 1.09005 * 109.46963 * 304.99742 * 3 2 1 5 5 O 1.42895 * 109.47368 * 64.99984 * 3 2 1 6 6 C 1.35918 * 117.00087 * 264.76994 * 5 3 2 7 7 C 1.38728 * 120.04413 * 359.08665 * 6 5 3 8 8 C 1.38137 * 119.95802 * 179.79159 * 7 6 5 9 9 C 1.38369 * 120.04141 * 0.46405 * 8 7 6 10 10 Cl 1.73601 * 119.95615 * 179.76880 * 9 8 7 11 11 C 1.38356 * 120.08921 * 359.78911 * 9 8 7 12 12 C 1.38149 * 120.04294 * 359.97438 * 11 9 8 13 13 C 1.50705 * 109.46960 * 185.00069 * 3 2 1 14 14 O 1.21283 * 119.99755 * 244.99475 * 13 3 2 15 15 N 1.34774 * 119.99916 * 64.99822 * 13 3 2 16 16 C 1.39242 * 119.99735 * 175.28287 * 15 13 3 17 17 C 1.39474 * 119.83008 * 36.03650 * 16 15 13 18 18 C 1.36377 * 120.16749 * 179.71933 * 17 16 15 19 19 C 1.40870 * 119.82679 * 0.27542 * 18 17 16 20 20 C 1.41148 * 120.16516 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00358 * 209.59204 * 20 19 18 22 22 C 1.39899 * 120.00120 * 29.58109 * 20 19 18 23 23 N 1.30879 * 120.00245 * 10.41873 * 22 20 19 24 24 Si 1.86805 * 120.00377 * 190.41863 * 22 20 19 25 25 H 1.48494 * 109.47382 * 59.99927 * 24 22 20 26 26 H 1.48499 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46879 * 300.00020 * 24 22 20 28 28 C 1.40870 * 119.67135 * 359.97438 * 19 18 17 29 29 C 1.36370 * 119.83050 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.47421 * 59.99402 * 1 2 3 31 31 H 1.08991 * 109.47571 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46718 * 300.00481 * 1 2 3 33 33 H 1.09000 * 109.47096 * 239.99868 * 2 1 3 34 34 H 1.09004 * 109.47063 * 119.99711 * 2 1 3 35 35 H 1.07995 * 120.01609 * 0.02562 * 7 6 5 36 36 H 1.08003 * 119.98247 * 180.23143 * 8 7 6 37 37 H 1.07995 * 119.98550 * 180.02562 * 11 9 8 38 38 H 1.07994 * 120.02389 * 179.97438 * 12 11 9 39 39 H 0.96999 * 120.00370 * 355.29107 * 15 13 3 40 40 H 1.08000 * 119.91831 * 359.97438 * 17 16 15 41 41 H 1.07997 * 120.08993 * 180.29798 * 18 17 16 42 42 H 0.96999 * 120.00232 * 179.97438 * 23 22 20 43 43 H 1.08004 * 120.08086 * 180.02562 * 28 19 18 44 44 H 1.08000 * 119.91882 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 0.5177 2.8146 1.2052 7 6 -0.2157 2.9323 0.0336 8 6 -1.3808 3.6744 0.0206 9 6 -1.8113 4.3080 1.1729 10 17 -3.2726 5.2450 1.1526 11 6 -1.0785 4.1962 2.3411 12 6 0.0846 3.4509 2.3594 13 6 3.5420 1.4442 -0.1239 14 8 4.2251 1.8610 0.7875 15 7 4.1260 0.9826 -1.2474 16 6 5.5067 1.0744 -1.4025 17 6 6.3417 0.9046 -0.2983 18 6 7.6952 0.9875 -0.4434 19 6 8.2491 1.2510 -1.7116 20 6 9.6489 1.3377 -1.8700 21 1 10.0673 1.9712 -2.6382 22 6 10.4946 0.6032 -1.0319 23 7 9.9974 -0.3141 -0.2417 24 14 12.3336 0.9316 -1.0404 25 1 12.5861 2.3436 -0.6564 26 1 13.0024 0.0273 -0.0708 27 1 12.8742 0.6844 -2.4013 28 6 7.3989 1.4265 -2.8210 29 6 6.0474 1.3408 -2.6603 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.1220 2.4409 -0.8669 36 1 -1.9540 3.7632 -0.8904 37 1 -1.4163 4.6911 3.2396 38 1 0.6565 3.3642 3.2713 39 1 3.5845 0.5865 -1.9480 40 1 5.9156 0.7030 0.6734 41 1 8.3408 0.8510 0.4115 42 1 10.5838 -0.8236 0.3392 43 1 7.8165 1.6284 -3.7964 44 1 5.3943 1.4747 -3.5100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008494241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:59 Heat of formation + Delta-G solvation = -46.239574 kcal Electronic energy + Delta-G solvation = -28258.182788 eV Core-core repulsion = 24165.854994 eV Total energy + Delta-G solvation = -4092.327794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.108 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.01134 -40.86788 -39.27305 -38.52611 -37.15445 -36.24773 -35.13586 -34.35639 -32.11176 -31.49289 -31.09386 -30.74927 -28.65201 -26.56029 -24.42632 -23.54603 -23.51075 -23.11237 -22.25526 -20.98677 -19.70911 -19.25557 -18.90979 -17.77893 -17.42427 -17.16486 -16.88344 -16.85344 -15.93738 -15.80976 -15.70162 -15.34417 -14.99575 -14.86530 -14.53192 -14.48314 -14.32753 -13.96639 -13.75272 -13.62760 -13.47320 -13.28110 -13.21260 -13.04440 -12.87294 -12.78231 -12.53262 -12.42372 -12.39204 -11.95585 -11.78263 -11.68346 -11.50728 -11.42766 -11.18095 -10.83089 -10.54749 -10.13832 -9.46780 -9.14193 -8.84699 -8.57392 -6.31415 0.15657 0.21192 0.76650 1.13038 1.18468 1.37754 1.42681 1.50326 1.57068 1.71526 2.21311 2.53255 2.60637 2.76534 3.45873 3.55822 3.66740 3.71949 3.76768 3.90023 4.09011 4.22152 4.33928 4.38833 4.43355 4.47384 4.50510 4.72690 4.88338 4.90578 4.95637 5.03162 5.08982 5.11029 5.15256 5.17515 5.23067 5.29273 5.33795 5.39662 5.51738 5.67684 5.84017 6.04611 6.09924 6.23509 6.33715 6.63927 6.67974 6.92716 6.98973 7.30769 8.36925 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.001771 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.295585 B =15808.326428 C =16029.137775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.076 3.924 4 H 0.135 0.865 5 O -0.306 6.306 6 C 0.123 3.877 7 C -0.198 4.198 8 C -0.065 4.065 9 C -0.084 4.084 10 Cl -0.071 7.071 11 C -0.069 4.069 12 C -0.155 4.155 13 C 0.495 3.505 14 O -0.563 6.563 15 N -0.632 5.632 16 C 0.009 3.991 17 C -0.103 4.103 18 C -0.175 4.175 19 C 0.072 3.928 20 C -0.495 4.495 21 H 0.081 0.919 22 C 0.027 3.973 23 N -0.835 5.835 24 Si 0.986 3.014 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.255 1.255 28 C -0.218 4.218 29 C -0.096 4.096 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.138 0.862 39 H 0.421 0.579 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.285 0.715 43 H 0.113 0.887 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.213 3.126 -1.691 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.017 3.983 4 H 0.153 0.847 5 O -0.219 6.219 6 C 0.077 3.923 7 C -0.216 4.216 8 C -0.083 4.083 9 C -0.110 4.110 10 Cl -0.042 7.042 11 C -0.087 4.087 12 C -0.174 4.174 13 C 0.282 3.718 14 O -0.440 6.440 15 N -0.279 5.279 16 C -0.084 4.084 17 C -0.123 4.123 18 C -0.195 4.195 19 C 0.070 3.930 20 C -0.525 4.525 21 H 0.099 0.901 22 C -0.186 4.186 23 N -0.462 5.462 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.179 1.179 28 C -0.238 4.238 29 C -0.116 4.116 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.156 0.844 39 H 0.260 0.740 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.131 0.869 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.705 3.291 -0.712 24.934 hybrid contribution 0.889 -0.149 0.189 0.921 sum -23.816 3.141 -0.523 24.028 Atomic orbital electron populations 1.21927 0.92612 1.03581 1.02689 1.22054 0.98692 0.92014 1.04658 1.22476 0.90000 0.97177 0.88639 0.84749 1.86226 1.38903 1.62158 1.34581 1.19393 0.85911 0.91594 0.95381 1.21488 0.97162 1.04843 0.98107 1.21083 0.95348 0.94087 0.97832 1.20940 0.91897 1.01845 0.96364 1.98366 1.35201 1.71829 1.98836 1.21016 0.92744 0.96980 0.97975 1.20552 0.98287 1.00698 0.97847 1.21045 0.90699 0.77493 0.82549 1.90731 1.65935 1.47307 1.40061 1.42658 1.05544 1.59595 1.20068 1.17220 0.82144 1.14375 0.94638 1.20580 0.93514 1.00767 0.97469 1.20916 0.93434 1.07474 0.97725 1.18041 0.94238 0.89503 0.91243 1.19790 0.91661 1.24817 1.16189 0.90114 1.26816 1.06286 0.92680 0.92837 1.69893 1.39625 1.16972 1.19708 0.85198 0.75564 0.79159 0.79447 1.18697 1.19563 1.17909 1.20893 0.93410 1.11887 0.97571 1.20435 0.95093 1.00653 0.95439 0.90003 0.90621 0.93457 0.87326 0.91916 0.82026 0.82317 0.82766 0.84424 0.74045 0.88941 0.88706 0.90419 0.86877 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.46 71.98 0.61 -1.19 16 2 C -0.14 -2.25 5.61 30.59 0.17 -2.08 16 3 C 0.08 1.69 2.57 29.85 0.08 1.76 16 4 H 0.14 2.00 5.37 -2.38 -0.01 1.99 16 5 O -0.31 -8.26 9.19 -73.63 -0.68 -8.94 16 6 C 0.12 2.62 5.39 22.50 0.12 2.74 16 7 C -0.20 -3.02 7.21 22.36 0.16 -2.86 16 8 C -0.07 -0.89 9.82 22.28 0.22 -0.68 16 9 C -0.08 -1.32 6.32 22.33 0.14 -1.18 16 10 Cl -0.07 -1.05 28.95 -2.72 -0.08 -1.12 16 11 C -0.07 -1.13 9.82 22.28 0.22 -0.91 16 12 C -0.15 -3.12 9.99 22.37 0.22 -2.90 16 13 C 0.50 16.44 7.01 87.66 0.61 17.05 16 14 O -0.56 -25.61 13.96 15.95 0.22 -25.39 16 15 N -0.63 -19.47 5.23 -303.11 -1.58 -21.06 16 16 C 0.01 0.40 6.29 38.56 0.24 0.64 16 17 C -0.10 -5.28 8.61 22.13 0.19 -5.09 16 18 C -0.18 -9.85 8.60 22.48 0.19 -9.66 16 19 C 0.07 3.95 5.54 -21.28 -0.12 3.83 16 20 C -0.49 -26.90 9.04 23.39 0.21 -26.69 16 21 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 22 C 0.03 1.40 5.25 85.24 0.45 1.85 16 23 N -0.84 -45.46 10.87 21.82 0.24 -45.22 16 24 Si 0.99 39.17 29.57 68.60 2.03 41.19 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 26 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 28 C -0.22 -10.18 9.74 22.48 0.22 -9.97 16 29 C -0.10 -3.85 9.90 22.13 0.22 -3.63 16 30 H 0.08 0.61 6.80 -2.39 -0.02 0.60 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.72 6.33 -2.38 -0.02 0.70 16 33 H 0.11 1.30 7.65 -2.39 -0.02 1.29 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.16 1.66 4.50 -2.91 -0.01 1.64 16 36 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.42 8.52 8.37 -92.71 -0.78 7.75 16 40 H 0.09 4.90 6.27 -2.91 -0.02 4.88 16 41 H 0.09 5.71 6.26 -2.91 -0.02 5.69 16 42 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 43 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -73.01 378.54 4.60 -68.41 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.28 Total: 31.09 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 4.16 Total: -38.97 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -1.35 Total: -66.28 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.45 Total: -34.32 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.19 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.12 kcal Total: -73.01 4.60 -68.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008494241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.171 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds