Wall clock time and date at job start Tue Mar 31 2020 07:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30828 * 122.21209 * 2 1 4 4 C 1.30682 * 117.15699 * 179.97438 * 3 2 1 5 5 C 1.46966 * 125.38088 * 179.97438 * 4 3 2 6 6 C 1.36233 * 125.33717 * 359.74179 * 5 4 3 7 7 C 1.37729 * 114.42965 * 179.83061 * 6 5 4 8 8 C 1.33723 * 115.19733 * 0.46141 * 7 6 5 9 9 S 1.75825 * 109.96693 * 359.74562 * 8 7 6 10 10 S 1.76148 * 109.23499 * 359.75240 * 4 3 2 11 11 C 1.35295 * 122.20595 * 179.97438 * 2 1 3 12 12 C 1.47479 * 125.93813 * 359.97438 * 11 2 1 13 13 C 1.40287 * 120.11252 * 179.97438 * 12 11 2 14 14 C 1.37122 * 118.08597 * 180.02562 * 13 12 11 15 15 C 1.39843 * 118.16172 * 359.97438 * 14 13 12 16 16 S 1.76195 * 120.01291 * 180.02562 * 15 14 13 17 17 C 1.76202 * 99.99702 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00223 * 359.97438 * 17 16 15 19 19 C 1.38678 * 119.99592 * 179.97438 * 17 16 15 20 20 N 1.31635 * 120.00451 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46953 * 90.00226 * 21 19 17 23 23 H 1.48497 * 109.46850 * 209.99753 * 21 19 17 24 24 H 1.48497 * 109.47056 * 330.00074 * 21 19 17 25 25 N 1.32652 * 119.97231 * 359.97438 * 15 14 13 26 26 N 1.28403 * 122.06348 * 0.02562 * 25 15 14 27 27 H 1.08998 * 109.46685 * 270.02025 * 1 2 3 28 28 H 1.08994 * 109.47088 * 30.01775 * 1 2 3 29 29 H 1.09001 * 109.47306 * 150.02284 * 1 2 3 30 30 H 1.07998 * 122.78708 * 0.02562 * 6 5 4 31 31 H 1.08002 * 122.40043 * 180.20744 * 7 6 5 32 32 H 1.08001 * 125.01539 * 179.75290 * 8 7 6 33 33 H 1.08005 * 120.95500 * 0.04181 * 13 12 11 34 34 H 1.08003 * 120.92236 * 180.02562 * 14 13 12 35 35 H 0.97000 * 120.00199 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2044 1.1069 0.0000 4 6 3.5061 0.9918 0.0005 5 6 4.4594 2.1104 0.0001 6 6 4.1246 3.4309 -0.0059 7 6 5.2001 4.2912 -0.0013 8 6 6.4005 3.7020 -0.0014 9 16 6.2113 1.9540 -0.0003 10 16 3.9376 -0.7160 0.0083 11 6 2.2281 -1.1448 0.0005 12 6 1.6791 -2.5136 0.0017 13 6 2.5434 -3.6186 0.0015 14 6 1.9882 -4.8724 0.0021 15 6 0.5937 -4.9767 0.0033 16 16 -0.1713 -6.5639 0.0047 17 6 -1.8673 -6.0861 0.0066 18 1 -2.1334 -5.0394 0.0071 19 6 -2.8604 -7.0540 0.0076 20 7 -2.5361 -8.3298 0.0066 21 14 -4.6584 -6.5474 0.0104 22 1 -5.1369 -6.4126 -1.3890 23 1 -5.4627 -7.5806 0.7110 24 1 -4.8050 -5.2464 0.7112 25 7 -0.1529 -3.8803 0.0044 26 7 0.3629 -2.7044 0.0039 27 1 -0.3632 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 3.1008 3.7747 -0.0106 31 1 5.0824 5.3648 -0.0019 32 1 7.3465 4.2230 -0.0019 33 1 3.6152 -3.4855 0.0013 34 1 2.6107 -5.7550 0.0025 35 1 -3.2307 -9.0069 0.0077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009578082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:09 Heat of formation + Delta-G solvation = 128.693344 kcal Electronic energy + Delta-G solvation = -22537.748440 eV Core-core repulsion = 19073.870839 eV Total energy + Delta-G solvation = -3463.877602 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 361.007 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33746 -39.52125 -37.86106 -33.63316 -32.95977 -32.67294 -31.34835 -29.35599 -27.67412 -25.90241 -25.68552 -24.04330 -23.49351 -22.94287 -20.34139 -18.64053 -18.56120 -18.36393 -17.47541 -16.48091 -16.19892 -16.10893 -15.30774 -15.18241 -15.09642 -14.25815 -14.10486 -13.76744 -13.46925 -13.38021 -13.22368 -12.95473 -12.84843 -12.47998 -12.21648 -12.18331 -11.63536 -11.37923 -11.29790 -11.20857 -11.15935 -10.82337 -10.47659 -10.03595 -9.97232 -9.74335 -9.59467 -9.41642 -9.35622 -9.10581 -8.87848 -8.79515 -8.08663 -6.98377 -6.67312 -4.36298 -0.27479 0.79559 0.96080 1.19442 1.33770 1.40901 1.65263 1.74710 2.39367 2.73856 2.96727 3.10251 3.14341 3.22852 3.84787 3.92339 4.10343 4.50843 4.67564 4.73253 4.79023 4.80246 4.95143 5.09055 5.11178 5.24841 5.29095 5.46650 5.50561 5.69027 5.85715 5.95677 6.00625 6.06105 6.09954 6.13782 6.39853 6.50151 6.76310 7.39136 7.66365 8.22697 8.85158 9.31485 10.39259 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.027094 B = 0.002036 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.182767 B =13747.914950 C =14765.945610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.093 3.907 3 N -0.445 5.445 4 C 0.121 3.879 5 C -0.128 4.128 6 C -0.086 4.086 7 C -0.134 4.134 8 C -0.206 4.206 9 S 0.138 5.862 10 S 0.102 5.898 11 C -0.139 4.139 12 C 0.067 3.933 13 C -0.095 4.095 14 C -0.121 4.121 15 C 0.029 3.971 16 S 0.162 5.838 17 C -0.540 4.540 18 H 0.114 0.886 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.933 3.067 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.263 1.263 25 N -0.246 5.246 26 N -0.202 5.202 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.170 0.830 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.331 18.225 -0.075 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 N -0.160 5.160 4 C -0.154 4.154 5 C -0.249 4.249 6 C -0.121 4.121 7 C -0.165 4.165 8 C -0.343 4.343 9 S 0.402 5.598 10 S 0.359 5.641 11 C -0.262 4.262 12 C -0.086 4.086 13 C -0.125 4.125 14 C -0.157 4.157 15 C -0.224 4.224 16 S 0.415 5.585 17 C -0.688 4.688 18 H 0.132 0.868 19 C -0.135 4.135 20 N -0.500 5.500 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.187 1.187 25 N -0.098 5.098 26 N -0.049 5.049 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.187 0.813 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.792 15.855 -0.058 23.831 hybrid contribution -1.729 1.938 0.020 2.598 sum 16.062 17.793 -0.038 23.971 Atomic orbital electron populations 1.20700 0.85777 1.04452 1.03502 1.20440 0.98805 0.84760 1.00377 1.66367 1.03387 1.31055 1.15146 1.24343 0.91753 0.93202 1.06122 1.21986 0.95024 0.94224 1.13641 1.20730 1.01309 0.90198 0.99898 1.20096 0.91139 1.01484 1.03754 1.25844 1.02521 0.96201 1.09752 1.84258 0.98602 1.05113 1.71789 1.84579 1.06017 1.02864 1.70631 1.23508 0.93922 0.96302 1.12496 1.19648 0.92349 0.89729 1.06922 1.21667 1.00079 0.92538 0.98230 1.21522 0.94392 0.98158 1.01614 1.25899 0.94844 1.03800 0.97841 1.83482 1.04076 0.94122 1.76803 1.23580 0.89448 0.98377 1.57387 0.86841 1.25216 1.01171 0.94251 0.92893 1.69955 1.35298 0.99955 1.44778 0.85896 0.80383 0.78992 0.78941 1.19707 1.20537 1.18722 1.73723 1.28821 0.92817 1.14460 1.73084 1.09323 1.16380 1.06130 0.90652 0.91528 0.87355 0.83041 0.83550 0.81283 0.84793 0.83696 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.58 36.01 0.35 -0.95 16 2 C 0.09 1.49 6.73 -84.07 -0.57 0.93 16 3 N -0.45 -6.79 10.45 -7.48 -0.08 -6.87 16 4 C 0.12 1.64 7.44 -14.51 -0.11 1.53 16 5 C -0.13 -1.43 6.46 -36.77 -0.24 -1.67 16 6 C -0.09 -0.83 10.10 -40.49 -0.41 -1.24 16 7 C -0.13 -0.98 10.15 -41.35 -0.42 -1.40 16 8 C -0.21 -1.38 11.21 29.15 0.33 -1.05 16 9 S 0.14 1.18 23.12 -107.50 -2.49 -1.31 16 10 S 0.10 1.32 22.27 -107.50 -2.39 -1.08 16 11 C -0.14 -2.24 6.43 -36.87 -0.24 -2.48 16 12 C 0.07 1.20 6.81 -82.83 -0.56 0.63 16 13 C -0.09 -1.52 9.69 -39.22 -0.38 -1.90 16 14 C -0.12 -2.10 9.90 -39.39 -0.39 -2.49 16 15 C 0.03 0.62 7.04 -16.60 -0.12 0.50 16 16 S 0.16 3.82 21.65 -107.50 -2.33 1.49 16 17 C -0.54 -14.31 9.26 30.90 0.29 -14.03 16 18 H 0.11 3.08 6.55 -52.49 -0.34 2.73 16 19 C 0.08 1.96 5.49 -17.47 -0.10 1.86 16 20 N -0.87 -23.15 13.22 55.48 0.73 -22.42 16 21 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 25 N -0.25 -5.63 9.63 31.57 0.30 -5.33 16 26 N -0.20 -4.16 8.28 33.31 0.28 -3.89 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 1.84 5.66 -51.93 -0.29 1.55 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.13 1.69 7.41 -52.48 -0.39 1.30 16 34 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 35 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -29.39 352.22 -10.95 -40.34 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -2.70 Total: 0.16 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -2.57 Total: -21.76 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 1.24 Total: -38.50 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -7.21 Total: -0.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.39 -10.95 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009578082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.031 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds