Wall clock time and date at job start Tue Mar 31 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42103 * 110.54389 * 2 1 4 4 O 1.42096 * 110.54382 * 223.24141 * 2 1 3 5 5 N 1.65609 * 104.44643 * 111.62023 * 2 1 3 6 6 C 1.39705 * 120.00120 * 60.18636 * 5 2 1 7 7 C 1.39034 * 120.00052 * 254.09101 * 6 5 2 8 8 C 1.38208 * 120.22107 * 179.97438 * 7 6 5 9 9 C 1.38014 * 120.23310 * 359.79016 * 8 7 6 10 10 C 1.39603 * 120.00114 * 0.46505 * 9 8 7 11 11 C 1.47807 * 120.11152 * 179.79147 * 10 9 8 12 12 O 1.21561 * 120.00365 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00167 * 359.72086 * 11 10 9 14 14 C 1.39126 * 120.00149 * 175.00901 * 13 11 10 15 15 C 1.39512 * 119.83348 * 215.74377 * 14 13 11 16 16 C 1.36364 * 120.16306 * 179.75608 * 15 14 13 17 17 C 1.40878 * 119.83073 * 0.54027 * 16 15 14 18 18 C 1.41133 * 120.16214 * 179.69529 * 17 16 15 19 19 H 1.08005 * 120.00471 * 155.30297 * 18 17 16 20 20 C 1.39911 * 120.00210 * 335.29851 * 18 17 16 21 21 N 1.30877 * 119.99849 * 333.30007 * 20 18 17 22 22 Si 1.86796 * 120.00287 * 153.29681 * 20 18 17 23 23 H 1.48496 * 109.46988 * 94.99029 * 22 20 18 24 24 H 1.48506 * 109.47095 * 214.98948 * 22 20 18 25 25 H 1.48496 * 109.47028 * 334.98947 * 22 20 18 26 26 C 1.40883 * 119.67613 * 359.71191 * 17 16 15 27 27 C 1.36358 * 119.83274 * 0.02562 * 26 17 16 28 28 C 1.38630 * 120.00261 * 74.11133 * 6 5 2 29 29 H 1.08997 * 109.47159 * 312.72913 * 1 2 3 30 30 H 1.08995 * 109.47005 * 72.72742 * 1 2 3 31 31 H 1.08997 * 109.47152 * 192.72647 * 1 2 3 32 32 H 0.97002 * 119.99598 * 240.18358 * 5 2 1 33 33 H 1.08002 * 119.88653 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.87921 * 180.02562 * 8 7 6 35 35 H 1.08003 * 120.00189 * 180.25731 * 9 8 7 36 36 H 0.96993 * 119.99912 * 355.01654 * 13 11 10 37 37 H 1.07998 * 119.91873 * 359.97438 * 15 14 13 38 38 H 1.08004 * 120.08753 * 180.22765 * 16 15 14 39 39 H 0.96991 * 120.00043 * 179.97438 * 21 20 18 40 40 H 1.08005 * 120.08373 * 179.97438 * 26 17 16 41 41 H 1.07996 * 119.91512 * 180.02562 * 27 26 17 42 42 H 1.08001 * 120.11484 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4909 6 6 1.8189 -1.8713 1.8725 7 6 0.7936 -2.0269 2.7986 8 6 0.3858 -3.2915 3.1789 9 6 0.9905 -4.4085 2.6389 10 6 2.0245 -4.2632 1.7123 11 6 2.6769 -5.4577 1.1360 12 8 3.5768 -5.3290 0.3289 13 7 2.2775 -6.6898 1.5090 14 6 2.8183 -7.8131 0.8915 15 6 2.0179 -8.9328 0.6637 16 6 2.5397 -10.0356 0.0545 17 6 3.8935 -10.0464 -0.3349 18 6 4.4424 -11.1864 -0.9602 19 1 5.3056 -11.0875 -1.6018 20 6 3.8686 -12.4448 -0.7488 21 7 3.2117 -12.6870 0.3570 22 14 4.0398 -13.7791 -2.0447 23 1 5.1999 -14.6449 -1.7134 24 1 2.8026 -14.6000 -2.0766 25 1 4.2530 -13.1533 -3.3744 26 6 4.6969 -8.9139 -0.0968 27 6 4.1598 -7.8164 0.5086 28 6 2.4364 -2.9868 1.3281 29 1 -0.3633 0.6973 0.7549 30 1 -0.3633 0.3051 -0.9813 31 1 -0.3633 -1.0024 0.2264 32 1 2.7526 -0.0479 2.0992 33 1 0.3137 -1.1567 3.2215 34 1 -0.4115 -3.4060 3.8984 35 1 0.6660 -5.3949 2.9357 36 1 1.6130 -6.7933 2.2080 37 1 0.9815 -8.9249 0.9675 38 1 1.9179 -10.9004 -0.1245 39 1 2.8135 -13.5592 0.5034 40 1 5.7357 -8.9152 -0.3922 41 1 4.7743 -6.9473 0.6914 42 1 3.2335 -2.8681 0.6092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010328789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:39 Heat of formation + Delta-G solvation = -48.369817 kcal Electronic energy + Delta-G solvation = -28239.476302 eV Core-core repulsion = 24083.673929 eV Total energy + Delta-G solvation = -4155.802373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.38546 -39.00092 -37.43637 -37.17819 -36.31268 -35.31922 -34.50834 -33.05178 -31.42973 -29.91323 -29.74623 -29.47500 -28.73798 -25.40256 -23.70492 -22.79906 -21.61527 -20.82293 -20.13863 -19.69952 -18.40806 -18.10604 -17.35604 -16.97781 -16.54925 -16.33955 -16.19874 -15.56755 -15.27938 -14.97525 -14.67533 -14.26001 -13.97080 -13.83470 -13.75822 -13.63158 -13.31356 -12.96963 -12.68513 -12.49185 -12.45356 -12.33658 -12.24705 -12.09165 -11.93081 -11.74483 -11.47386 -11.39959 -11.15320 -10.95030 -10.55388 -10.47794 -10.18153 -9.75869 -9.50583 -9.27185 -9.15688 -9.07393 -8.73325 -7.56128 -7.09349 -6.85768 -4.29372 -0.21846 0.59131 0.96006 2.21377 2.57318 2.89516 3.05256 3.07571 3.11063 3.21011 3.37376 3.60190 3.80024 3.82697 3.90270 4.30450 4.50795 4.53637 4.56305 4.58895 4.68654 4.89460 5.02096 5.15055 5.21983 5.47913 5.67163 5.70284 5.97268 6.01491 6.09690 6.16557 6.33300 6.44139 6.69220 6.74146 6.93196 7.00672 7.13892 7.26777 7.56428 7.67115 7.86382 8.01377 8.24045 8.25707 8.54642 8.70817 8.84104 8.97435 10.07261 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.001900 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.942351 B =14732.983039 C =15408.375566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.669 4.669 2 S 2.605 3.395 3 O -0.957 6.957 4 O -0.939 6.939 5 N -1.063 6.063 6 C 0.107 3.893 7 C -0.102 4.102 8 C -0.119 4.119 9 C -0.081 4.081 10 C -0.111 4.111 11 C 0.536 3.464 12 O -0.522 6.522 13 N -0.640 5.640 14 C -0.019 4.019 15 C -0.105 4.105 16 C -0.163 4.163 17 C 0.112 3.888 18 C -0.462 4.462 19 H 0.081 0.919 20 C 0.083 3.917 21 N -0.779 5.779 22 Si 0.901 3.099 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.258 1.258 26 C -0.220 4.220 27 C -0.069 4.069 28 C -0.050 4.050 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.425 0.575 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.393 0.607 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 20.472 7.689 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.698 3.302 3 O -0.947 6.947 4 O -0.929 6.929 5 N -0.818 5.818 6 C 0.013 3.987 7 C -0.123 4.123 8 C -0.138 4.138 9 C -0.100 4.100 10 C -0.115 4.115 11 C 0.323 3.677 12 O -0.399 6.399 13 N -0.282 5.282 14 C -0.111 4.111 15 C -0.125 4.125 16 C -0.183 4.183 17 C 0.110 3.890 18 C -0.490 4.490 19 H 0.099 0.901 20 C -0.138 4.138 21 N -0.403 5.403 22 Si 0.724 3.276 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.182 1.182 26 C -0.240 4.240 27 C -0.089 4.089 28 C -0.071 4.071 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.263 0.737 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.228 0.772 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.108 20.593 6.418 23.821 hybrid contribution -0.856 -0.655 0.564 1.216 sum -10.964 19.938 6.981 23.801 Atomic orbital electron populations 1.30464 1.27789 1.11948 1.11766 1.05225 0.77830 0.73951 0.73185 1.93629 1.78170 1.37485 1.85411 1.93693 1.76640 1.61240 1.61335 1.53185 1.68318 1.22266 1.38000 1.17139 0.97250 0.83854 1.00443 1.21556 0.95776 0.98256 0.96703 1.21001 1.00646 0.91567 1.00594 1.21524 0.94212 0.99661 0.94613 1.20101 0.98228 0.93981 0.99152 1.18154 0.84117 0.82993 0.82460 1.90788 1.29243 1.85952 1.33903 1.42808 1.42774 1.04595 1.38055 1.17074 0.93511 0.87785 1.12776 1.20169 0.96754 0.93977 1.01561 1.20674 0.95598 0.97113 1.04910 1.17637 0.91126 0.91933 0.88343 1.19536 1.13000 0.91053 1.25413 0.90085 1.25935 0.92959 1.00005 0.94854 1.69899 1.25378 1.23588 1.21466 0.86426 0.78664 0.80043 0.82420 1.19513 1.19952 1.18193 1.20660 0.98536 0.95734 1.09110 1.20403 0.92733 0.97326 0.98395 1.21771 0.97680 0.90135 0.97518 0.85165 0.85008 0.85074 0.73709 0.85006 0.84729 0.84943 0.77191 0.89202 0.87152 0.90707 0.88624 0.87476 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.07 10.73 101.05 1.08 -1.99 16 2 S 2.60 21.80 6.07 -107.50 -0.65 21.14 16 3 O -0.96 -10.46 18.08 -57.54 -1.04 -11.50 16 4 O -0.94 -12.44 16.94 -57.54 -0.97 -13.42 16 5 N -1.06 -7.69 5.60 32.39 0.18 -7.51 16 6 C 0.11 0.96 5.56 -83.83 -0.47 0.49 16 7 C -0.10 -0.66 9.96 -39.30 -0.39 -1.05 16 8 C -0.12 -0.80 10.02 -39.67 -0.40 -1.20 16 9 C -0.08 -0.75 9.53 -39.15 -0.37 -1.12 16 10 C -0.11 -1.46 5.87 -105.00 -0.62 -2.08 16 11 C 0.54 9.57 7.61 -12.35 -0.09 9.48 16 12 O -0.52 -11.55 13.78 5.31 0.07 -11.47 16 13 N -0.64 -11.18 5.24 -10.60 -0.06 -11.24 16 14 C -0.02 -0.43 6.30 -83.60 -0.53 -0.96 16 15 C -0.10 -2.35 9.90 -39.78 -0.39 -2.75 16 16 C -0.16 -4.14 8.68 -39.26 -0.34 -4.48 16 17 C 0.11 3.00 5.55 -106.80 -0.59 2.41 16 18 C -0.46 -12.19 8.97 -37.86 -0.34 -12.53 16 19 H 0.08 2.08 7.97 -52.48 -0.42 1.66 16 20 C 0.08 2.04 4.91 -17.33 -0.09 1.95 16 21 N -0.78 -19.61 11.55 55.55 0.64 -18.97 16 22 Si 0.90 18.28 29.63 -169.99 -5.04 13.25 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.22 -5.64 9.74 -39.26 -0.38 -6.02 16 27 C -0.07 -1.67 8.61 -39.78 -0.34 -2.01 16 28 C -0.05 -0.63 8.82 -38.96 -0.34 -0.97 16 29 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.13 0.57 8.05 -51.93 -0.42 0.15 16 32 H 0.42 2.18 8.92 -34.47 -0.31 1.88 16 33 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.98 6.41 -52.48 -0.34 0.64 16 36 H 0.39 5.26 6.86 -40.82 -0.28 4.98 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.11 2.83 6.50 -52.48 -0.34 2.49 16 39 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 40 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 41 H 0.11 2.58 6.24 -52.49 -0.33 2.25 16 42 H 0.15 2.27 7.31 -52.49 -0.38 1.89 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -36.19 374.05 -10.31 -46.50 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.48 Total: 10.40 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -4.60 Total: -22.82 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.77 Total: -37.72 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.94 Total: -36.39 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.04 Total: 13.25 kcal Atomic # 16 Polarization: 21.80 SS G_CDS: -0.65 Total: 21.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.19 -10.31 -46.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010328789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.868 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds