Wall clock time and date at job start Tue Mar 31 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42103 * 110.54389 * 2 1 4 4 O 1.42096 * 110.54382 * 223.24141 * 2 1 3 5 5 N 1.65609 * 104.44643 * 111.62023 * 2 1 3 6 6 C 1.39705 * 120.00120 * 60.18636 * 5 2 1 7 7 C 1.39034 * 120.00052 * 254.09101 * 6 5 2 8 8 C 1.38208 * 120.22107 * 179.97438 * 7 6 5 9 9 C 1.38014 * 120.23310 * 359.79016 * 8 7 6 10 10 C 1.39603 * 120.00114 * 0.46505 * 9 8 7 11 11 C 1.47807 * 120.11152 * 179.79147 * 10 9 8 12 12 O 1.21561 * 120.00365 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00167 * 359.72086 * 11 10 9 14 14 C 1.39126 * 120.00149 * 175.00901 * 13 11 10 15 15 C 1.39512 * 119.83348 * 215.74377 * 14 13 11 16 16 C 1.36364 * 120.16306 * 179.75608 * 15 14 13 17 17 C 1.40878 * 119.83073 * 0.54027 * 16 15 14 18 18 C 1.41133 * 120.16214 * 179.69529 * 17 16 15 19 19 H 1.08005 * 120.00471 * 155.30297 * 18 17 16 20 20 C 1.39911 * 120.00210 * 335.29851 * 18 17 16 21 21 N 1.30877 * 119.99849 * 333.30007 * 20 18 17 22 22 Si 1.86796 * 120.00287 * 153.29681 * 20 18 17 23 23 H 1.48496 * 109.46988 * 94.99029 * 22 20 18 24 24 H 1.48506 * 109.47095 * 214.98948 * 22 20 18 25 25 H 1.48496 * 109.47028 * 334.98947 * 22 20 18 26 26 C 1.40883 * 119.67613 * 359.71191 * 17 16 15 27 27 C 1.36358 * 119.83274 * 0.02562 * 26 17 16 28 28 C 1.38630 * 120.00261 * 74.11133 * 6 5 2 29 29 H 1.08997 * 109.47159 * 312.72913 * 1 2 3 30 30 H 1.08995 * 109.47005 * 72.72742 * 1 2 3 31 31 H 1.08997 * 109.47152 * 192.72647 * 1 2 3 32 32 H 0.97002 * 119.99598 * 240.18358 * 5 2 1 33 33 H 1.08002 * 119.88653 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.87921 * 180.02562 * 8 7 6 35 35 H 1.08003 * 120.00189 * 180.25731 * 9 8 7 36 36 H 0.96993 * 119.99912 * 355.01654 * 13 11 10 37 37 H 1.07998 * 119.91873 * 359.97438 * 15 14 13 38 38 H 1.08004 * 120.08753 * 180.22765 * 16 15 14 39 39 H 0.96991 * 120.00043 * 179.97438 * 21 20 18 40 40 H 1.08005 * 120.08373 * 179.97438 * 26 17 16 41 41 H 1.07996 * 119.91512 * 180.02562 * 27 26 17 42 42 H 1.08001 * 120.11484 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4909 6 6 1.8189 -1.8713 1.8725 7 6 0.7936 -2.0269 2.7986 8 6 0.3858 -3.2915 3.1789 9 6 0.9905 -4.4085 2.6389 10 6 2.0245 -4.2632 1.7123 11 6 2.6769 -5.4577 1.1360 12 8 3.5768 -5.3290 0.3289 13 7 2.2775 -6.6898 1.5090 14 6 2.8183 -7.8131 0.8915 15 6 2.0179 -8.9328 0.6637 16 6 2.5397 -10.0356 0.0545 17 6 3.8935 -10.0464 -0.3349 18 6 4.4424 -11.1864 -0.9602 19 1 5.3056 -11.0875 -1.6018 20 6 3.8686 -12.4448 -0.7488 21 7 3.2117 -12.6870 0.3570 22 14 4.0398 -13.7791 -2.0447 23 1 5.1999 -14.6449 -1.7134 24 1 2.8026 -14.6000 -2.0766 25 1 4.2530 -13.1533 -3.3744 26 6 4.6969 -8.9139 -0.0968 27 6 4.1598 -7.8164 0.5086 28 6 2.4364 -2.9868 1.3281 29 1 -0.3633 0.6973 0.7549 30 1 -0.3633 0.3051 -0.9813 31 1 -0.3633 -1.0024 0.2264 32 1 2.7526 -0.0479 2.0992 33 1 0.3137 -1.1567 3.2215 34 1 -0.4115 -3.4060 3.8984 35 1 0.6660 -5.3949 2.9357 36 1 1.6130 -6.7933 2.2080 37 1 0.9815 -8.9249 0.9675 38 1 1.9179 -10.9004 -0.1245 39 1 2.8135 -13.5592 0.5034 40 1 5.7357 -8.9152 -0.3922 41 1 4.7743 -6.9473 0.6914 42 1 3.2335 -2.8681 0.6092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010328789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:38 Heat of formation + Delta-G solvation = -75.688891 kcal Electronic energy + Delta-G solvation = -28240.660946 eV Core-core repulsion = 24083.673929 eV Total energy + Delta-G solvation = -4156.987017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.57859 -40.15183 -38.91715 -38.21014 -37.10928 -36.28555 -36.00717 -34.77983 -32.31605 -31.50083 -30.92907 -30.32796 -29.96678 -27.05561 -24.95390 -23.54410 -23.31959 -22.49287 -21.36528 -20.56621 -19.53179 -19.21589 -18.80110 -18.20022 -17.45253 -17.27790 -17.08307 -17.02786 -16.32234 -16.20495 -15.92600 -15.75005 -15.34689 -14.95403 -14.69937 -14.44497 -14.12321 -14.05414 -13.99918 -13.87547 -13.77528 -13.43085 -13.27609 -13.17514 -13.14303 -12.92218 -12.82334 -12.67948 -12.48495 -12.36254 -12.03625 -11.92856 -11.59979 -11.27006 -11.08366 -10.81002 -10.50875 -10.03877 -9.83190 -9.49837 -8.95926 -8.70312 -6.26207 -0.83754 -0.23019 0.24158 0.85015 1.12105 1.38485 1.44631 1.55102 1.59634 1.86534 2.20881 2.27157 2.63908 2.76992 2.81221 3.23116 3.64413 3.73140 3.86100 3.94730 4.05551 4.17729 4.19013 4.28813 4.37873 4.45073 4.48517 4.78783 4.88378 4.91377 5.04199 5.09793 5.12958 5.23832 5.30292 5.34748 5.36757 5.41072 5.63540 5.74559 5.86728 6.00219 6.07124 6.10470 6.34862 6.60536 6.68908 6.88804 6.96593 7.34272 8.25293 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.001900 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.942351 B =14732.983039 C =15408.375566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.601 3.399 3 O -0.990 6.990 4 O -1.004 7.004 5 N -1.056 6.056 6 C 0.109 3.891 7 C -0.074 4.074 8 C -0.103 4.103 9 C -0.073 4.073 10 C -0.138 4.138 11 C 0.534 3.466 12 O -0.578 6.578 13 N -0.631 5.631 14 C -0.005 4.005 15 C -0.099 4.099 16 C -0.180 4.180 17 C 0.083 3.917 18 C -0.502 4.502 19 H 0.072 0.928 20 C 0.046 3.954 21 N -0.806 5.806 22 Si 0.976 3.024 23 H -0.261 1.261 24 H -0.259 1.259 25 H -0.263 1.263 26 C -0.243 4.243 27 C -0.083 4.083 28 C -0.077 4.077 29 H 0.166 0.834 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.434 0.566 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.154 0.846 36 H 0.417 0.583 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.294 0.706 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 21.815 10.251 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.700 3.300 3 O -0.980 6.980 4 O -0.994 6.994 5 N -0.812 5.812 6 C 0.014 3.986 7 C -0.095 4.095 8 C -0.121 4.121 9 C -0.093 4.093 10 C -0.142 4.142 11 C 0.324 3.676 12 O -0.458 6.458 13 N -0.276 5.276 14 C -0.098 4.098 15 C -0.119 4.119 16 C -0.200 4.200 17 C 0.080 3.920 18 C -0.530 4.530 19 H 0.090 0.910 20 C -0.172 4.172 21 N -0.431 5.431 22 Si 0.796 3.204 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.187 1.187 26 C -0.263 4.263 27 C -0.103 4.103 28 C -0.099 4.099 29 H 0.184 0.816 30 H 0.166 0.834 31 H 0.162 0.838 32 H 0.274 0.726 33 H 0.197 0.803 34 H 0.199 0.801 35 H 0.171 0.829 36 H 0.256 0.744 37 H 0.148 0.852 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.613 21.963 9.032 27.883 hybrid contribution 0.441 -0.823 -0.100 0.939 sum -14.173 21.140 8.932 26.973 Atomic orbital electron populations 1.30240 1.21411 1.13892 1.14187 1.04999 0.80062 0.72376 0.72550 1.93580 1.80259 1.38450 1.85723 1.93629 1.79490 1.62645 1.63590 1.52919 1.69029 1.21767 1.37516 1.17175 0.97731 0.82950 1.00718 1.22070 0.93351 1.00130 0.93930 1.21525 1.00436 0.90288 0.99886 1.21787 0.92471 1.02023 0.92968 1.19698 1.00835 0.91513 1.02167 1.19007 0.83083 0.84184 0.81350 1.90757 1.31827 1.86818 1.36442 1.42662 1.43115 1.03327 1.38519 1.17146 0.92609 0.89066 1.11007 1.20466 0.98506 0.92810 1.00151 1.20719 0.95059 0.98030 1.06174 1.17950 0.92182 0.92451 0.89399 1.19717 1.14130 0.92394 1.26801 0.90958 1.26712 0.92216 1.01620 0.96604 1.69899 1.25668 1.24862 1.22623 0.85299 0.79355 0.76892 0.78830 1.18576 1.18315 1.18747 1.20768 0.98603 0.96543 1.10431 1.20498 0.94154 0.96658 0.99023 1.21634 0.98134 0.91902 0.98275 0.81569 0.83443 0.83845 0.72576 0.80263 0.80140 0.82889 0.74416 0.85192 0.87785 0.89565 0.89187 0.88161 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.25 10.73 113.37 1.22 -2.03 16 2 S 2.60 42.35 6.07 -56.49 -0.34 42.01 16 3 O -0.99 -21.58 18.08 -127.65 -2.31 -23.89 16 4 O -1.00 -28.71 16.94 -127.65 -2.16 -30.87 16 5 N -1.06 -13.85 5.60 -51.45 -0.29 -14.14 16 6 C 0.11 1.70 5.56 38.17 0.21 1.92 16 7 C -0.07 -0.53 9.96 22.45 0.22 -0.31 16 8 C -0.10 -0.73 10.02 22.21 0.22 -0.51 16 9 C -0.07 -1.08 9.53 22.55 0.21 -0.87 16 10 C -0.14 -3.59 5.87 -20.11 -0.12 -3.71 16 11 C 0.53 19.72 7.61 86.77 0.66 20.38 16 12 O -0.58 -27.62 13.78 -3.91 -0.05 -27.67 16 13 N -0.63 -21.86 5.24 -305.73 -1.60 -23.46 16 14 C 0.00 -0.22 6.30 38.60 0.24 0.02 16 15 C -0.10 -4.45 9.90 22.14 0.22 -4.23 16 16 C -0.18 -9.37 8.68 22.48 0.20 -9.17 16 17 C 0.08 4.66 5.55 -21.28 -0.12 4.55 16 18 C -0.50 -27.92 8.97 23.39 0.21 -27.71 16 19 H 0.07 3.97 7.97 -2.91 -0.02 3.94 16 20 C 0.05 2.34 4.91 85.24 0.42 2.76 16 21 N -0.81 -41.15 11.55 21.82 0.25 -40.90 16 22 Si 0.98 37.99 29.63 68.60 2.03 40.03 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 C -0.24 -13.36 9.74 22.48 0.22 -13.14 16 27 C -0.08 -4.28 8.61 22.14 0.19 -4.09 16 28 C -0.08 -2.03 8.82 22.67 0.20 -1.83 16 29 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.14 0.53 8.05 -2.39 -0.02 0.51 16 32 H 0.43 3.88 8.92 -96.74 -0.86 3.02 16 33 H 0.18 -0.27 8.06 -2.91 -0.02 -0.30 16 34 H 0.18 -0.16 8.06 -2.91 -0.02 -0.19 16 35 H 0.15 1.54 6.41 -2.91 -0.02 1.52 16 36 H 0.42 10.22 6.86 -92.71 -0.64 9.58 16 37 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.10 5.46 6.50 -2.91 -0.02 5.45 16 39 H 0.29 13.27 8.30 -92.72 -0.77 12.50 16 40 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.10 5.22 6.24 -2.91 -0.02 5.20 16 42 H 0.11 3.73 7.31 -2.91 -0.02 3.70 16 Total: -1.00 -89.18 374.05 -0.46 -89.64 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.40 Total: 27.24 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.41 Total: -37.99 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.64 Total: -78.49 kcal Atomic # 8 Polarization: -77.91 SS G_CDS: -4.52 Total: -82.44 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 42.35 SS G_CDS: -0.34 Total: 42.01 kcal Total: -89.18 -0.46 -89.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010328789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.954 kcal (2) G-P(sol) polarization free energy of solvation -89.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds