Wall clock time and date at job start Tue Mar 31 2020 07:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.50703 * 109.47289 * 270.00096 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46632 * 90.00476 * 8 6 4 10 10 H 1.48496 * 109.46690 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47171 * 330.00226 * 8 6 4 12 12 C 1.39109 * 120.00456 * 180.02562 * 2 1 3 13 13 C 1.39210 * 119.93674 * 179.72471 * 12 2 1 14 14 C 1.37630 * 120.07145 * 179.72535 * 13 12 2 15 15 C 1.39773 * 119.92903 * 0.57197 * 14 13 12 16 16 C 1.47694 * 120.06972 * 179.68150 * 15 14 13 17 17 O 1.21892 * 120.00367 * 180.02562 * 16 15 14 18 18 C 1.41188 * 119.99915 * 0.02562 * 16 15 14 19 19 C 1.35991 * 120.00217 * 179.97438 * 18 16 15 20 20 C 1.41271 * 119.99788 * 179.97438 * 19 18 16 21 21 C 1.37244 * 125.46441 * 179.72609 * 20 19 18 22 22 C 1.37283 * 113.22879 * 179.80362 * 21 20 19 23 23 C 1.34143 * 115.10654 * 0.48967 * 22 21 20 24 24 Cl 1.73600 * 124.49874 * 179.69120 * 23 22 21 25 25 S 1.70612 * 111.00889 * 359.72907 * 23 22 21 26 26 C 1.39774 * 119.86785 * 359.70246 * 15 14 13 27 27 C 1.37638 * 119.93280 * 0.02562 * 26 15 14 28 28 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 29 29 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 30 30 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 31 31 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 32 32 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 33 33 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 34 34 H 1.08006 * 119.96676 * 0.02562 * 13 12 2 35 35 H 1.07993 * 120.03937 * 180.25540 * 14 13 12 36 36 H 1.08001 * 119.99920 * 0.02562 * 18 16 15 37 37 H 1.08001 * 119.99863 * 0.02562 * 19 18 16 38 38 H 1.08003 * 123.38764 * 359.97438 * 21 20 19 39 39 H 1.07994 * 122.44728 * 180.19482 * 22 21 20 40 40 H 1.08004 * 120.03615 * 180.02562 * 26 15 14 41 41 H 1.07993 * 119.96502 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5531 3.6183 -0.6730 8 14 3.4378 3.4171 -3.4339 9 1 2.3076 4.2594 -3.9012 10 1 4.6977 4.2006 -3.4958 11 1 3.5560 2.2198 -4.3043 12 6 2.1606 -1.2047 -0.0005 13 6 3.5527 -1.2030 -0.0063 14 6 4.2438 -2.3932 -0.0012 15 6 3.5464 -3.6046 -0.0022 16 6 4.2849 -4.8836 -0.0038 17 8 3.6755 -5.9393 -0.0051 18 6 5.6968 -4.8836 -0.0037 19 6 6.3768 -6.0613 -0.0046 20 6 7.7895 -6.0611 -0.0051 21 6 8.5859 -7.1789 -0.0007 22 6 9.9275 -6.8878 -0.0067 23 6 10.2262 -5.5801 -0.0053 24 17 11.8399 -4.9401 -0.0042 25 16 8.8097 -4.6291 -0.0038 26 6 2.1487 -3.6030 -0.0022 27 6 1.4632 -2.4095 -0.0017 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 4.0299 4.4442 -0.8502 34 1 4.0911 -0.2667 -0.0100 35 1 5.3237 -2.3913 -0.0015 36 1 6.2367 -3.9483 -0.0021 37 1 5.8368 -6.9966 -0.0058 38 1 8.1963 -8.1862 0.0041 39 1 10.6870 -7.6556 -0.0074 40 1 1.6070 -4.5375 -0.0025 41 1 0.3832 -2.4077 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012249765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:10 Heat of formation + Delta-G solvation = 40.463580 kcal Electronic energy + Delta-G solvation = -25125.114433 eV Core-core repulsion = 21316.154668 eV Total energy + Delta-G solvation = -3808.959766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.83588 -38.70206 -38.31327 -37.05345 -35.58169 -34.17073 -32.83369 -30.81334 -30.18559 -28.82726 -27.93460 -25.96476 -25.07960 -23.69096 -22.35559 -21.73741 -20.43703 -20.25238 -18.93404 -17.84644 -17.10525 -16.64149 -16.41696 -15.60590 -15.49579 -14.82747 -14.49892 -14.47208 -14.26653 -14.14764 -13.86063 -13.79215 -13.57000 -13.16580 -12.96591 -12.73782 -12.44332 -12.32015 -12.23437 -12.00790 -11.87918 -11.61871 -11.47997 -11.35430 -11.07413 -11.00010 -10.79704 -10.43200 -10.37973 -10.05554 -9.90409 -9.54241 -9.06448 -9.05223 -8.60815 -8.51707 -8.34565 -6.68866 -6.15563 -4.28381 -0.34684 0.69103 1.08765 1.38905 1.77526 1.79119 1.98368 2.41837 3.20559 3.27992 3.31875 3.40142 3.91895 4.26217 4.31962 4.46242 4.71839 4.83799 4.91358 4.94355 5.11753 5.27631 5.35986 5.43240 5.51840 5.58613 5.63955 5.72420 5.79548 5.93987 5.97467 6.06952 6.11054 6.20327 6.23886 6.45959 6.75689 6.80786 6.94168 7.01157 7.17079 7.35166 7.69718 7.89263 7.99109 8.04795 8.22661 8.79415 9.39000 10.85500 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.002260 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.284526 B =12384.772586 C =14902.953076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.599 5.599 3 C 0.243 3.757 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.272 3.728 13 C -0.202 4.202 14 C -0.026 4.026 15 C -0.257 4.257 16 C 0.432 3.568 17 O -0.488 6.488 18 C -0.217 4.217 19 C 0.002 3.998 20 C -0.186 4.186 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.186 4.186 24 Cl -0.013 7.013 25 S 0.257 5.743 26 C -0.009 4.009 27 C -0.237 4.237 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.906 -18.338 3.312 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.301 5.301 3 C 0.124 3.876 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.160 3.840 13 C -0.224 4.224 14 C -0.046 4.046 15 C -0.260 4.260 16 C 0.318 3.682 17 O -0.371 6.371 18 C -0.239 4.239 19 C -0.018 4.018 20 C -0.305 4.305 21 C -0.129 4.129 22 C -0.161 4.161 23 C -0.331 4.331 24 Cl 0.016 6.984 25 S 0.525 5.475 26 C -0.028 4.028 27 C -0.260 4.260 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.140 0.860 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.504 -16.787 3.364 19.582 hybrid contribution 0.861 -0.806 -1.054 1.582 sum 10.366 -17.593 2.310 20.550 Atomic orbital electron populations 1.21597 0.80918 1.01550 1.01046 1.47242 1.05028 1.05019 1.72800 1.19449 0.92278 0.78419 0.97451 1.21508 1.36838 1.06660 0.92352 0.92144 1.24952 0.95242 0.96190 0.97553 1.69921 1.38090 1.14331 1.30848 0.86501 0.77787 0.78779 0.84481 1.20569 1.20988 1.19701 1.18209 0.91695 0.86081 0.88014 1.20875 0.92533 0.99024 1.09965 1.21010 0.98841 0.91199 0.93542 1.19802 0.94285 0.93519 1.18440 1.18829 0.88349 0.88606 0.72383 1.90624 1.72141 1.34070 1.40281 1.22775 0.97061 0.98349 1.05683 1.20843 0.89600 0.99926 0.91480 1.22781 0.97755 0.96820 1.13095 1.20809 0.91637 0.99346 1.01129 1.20009 0.97373 0.94703 1.04042 1.25049 0.93495 0.98791 1.15779 1.98385 1.17230 1.85760 1.97044 1.83535 0.91059 1.06236 1.66685 1.20849 0.92871 0.97233 0.91830 1.20586 0.99474 0.91096 1.14828 0.93421 0.92325 0.91560 0.94784 0.94250 0.92498 0.84303 0.86316 0.85460 0.83417 0.82624 0.83307 0.86015 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 10.22 59.85 0.61 2.11 16 2 N -0.60 -11.94 2.98 -180.99 -0.54 -12.48 16 3 C 0.24 5.73 4.94 -5.19 -0.03 5.71 16 4 C -0.53 -13.91 9.39 -34.44 -0.32 -14.24 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.27 5.15 6.55 -83.83 -0.55 4.60 16 13 C -0.20 -3.77 9.18 -39.44 -0.36 -4.13 16 14 C -0.03 -0.42 9.42 -39.23 -0.37 -0.79 16 15 C -0.26 -4.13 5.88 -104.89 -0.62 -4.74 16 16 C 0.43 6.45 6.89 -34.60 -0.24 6.21 16 17 O -0.49 -8.20 16.11 5.02 0.08 -8.12 16 18 C -0.22 -2.61 8.83 -39.27 -0.35 -2.96 16 19 C 0.00 0.02 9.36 -39.24 -0.37 -0.35 16 20 C -0.19 -1.72 6.20 -38.79 -0.24 -1.97 16 21 C -0.10 -0.76 10.25 -40.29 -0.41 -1.17 16 22 C -0.13 -1.00 10.08 -41.37 -0.42 -1.41 16 23 C -0.19 -1.64 6.82 29.29 0.20 -1.44 16 24 Cl -0.01 -0.11 29.27 -51.86 -1.52 -1.63 16 25 S 0.26 2.34 21.75 -107.50 -2.34 0.00 16 26 C -0.01 -0.14 9.58 -39.23 -0.38 -0.52 16 27 C -0.24 -3.95 9.18 -39.44 -0.36 -4.31 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.79 6.17 -51.93 -0.32 0.47 16 30 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 31 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 32 H 0.04 0.97 6.18 -51.93 -0.32 0.65 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.14 2.82 6.12 -52.48 -0.32 2.50 16 35 H 0.12 1.56 6.19 -52.49 -0.32 1.24 16 36 H 0.13 1.37 5.19 -52.49 -0.27 1.10 16 37 H 0.15 1.46 7.46 -52.49 -0.39 1.07 16 38 H 0.16 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 1.83 7.64 -52.48 -0.40 1.42 16 41 H 0.12 1.77 6.12 -52.49 -0.32 1.45 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -29.08 379.71 -11.48 -40.55 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.31 Total: 2.07 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -4.29 Total: -17.83 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.20 Total: -36.36 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.34 Total: 0.00 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.08 -11.48 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012249765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.015 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds