Wall clock time and date at job start Tue Mar 31 2020 07:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00345 * 2 1 4 4 C 1.50692 * 109.47209 * 270.00438 * 3 2 1 5 5 H 1.08003 * 120.00492 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00182 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99769 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00388 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46952 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46990 * 119.99528 * 8 6 4 11 11 H 1.48490 * 109.47100 * 239.99649 * 8 6 4 12 12 C 1.39128 * 120.00085 * 180.02562 * 2 1 3 13 13 C 1.39249 * 119.89970 * 359.97438 * 12 2 1 14 14 C 1.37096 * 120.09293 * 179.74397 * 13 12 2 15 15 C 1.40046 * 119.90371 * 0.25470 * 14 13 12 16 16 C 1.46903 * 120.09388 * 179.97438 * 15 14 13 17 17 C 1.35099 * 119.99574 * 180.02562 * 16 15 14 18 18 C 1.46302 * 119.99962 * 179.97438 * 17 16 15 19 19 O 1.21945 * 119.99749 * 0.02562 * 18 17 16 20 20 C 1.46591 * 120.00565 * 180.02562 * 18 17 16 21 21 C 1.36803 * 125.45395 * 179.72588 * 20 18 17 22 22 C 1.37380 * 113.30182 * 179.80318 * 21 20 18 23 23 C 1.34076 * 115.06954 * 0.48572 * 22 21 20 24 24 Cl 1.73598 * 124.52505 * 179.75100 * 23 22 21 25 25 S 1.70610 * 110.94905 * 359.73089 * 23 22 21 26 26 C 1.40048 * 119.81244 * 0.02562 * 15 14 13 27 27 C 1.37098 * 119.89965 * 359.97438 * 26 15 14 28 28 H 1.09004 * 109.46878 * 269.99882 * 1 2 3 29 29 H 1.08997 * 109.47093 * 29.99927 * 1 2 3 30 30 H 1.09001 * 109.47115 * 149.99926 * 1 2 3 31 31 H 1.09010 * 109.46895 * 30.00209 * 3 2 1 32 32 H 1.08999 * 109.47238 * 149.99497 * 3 2 1 33 33 H 0.97008 * 119.99944 * 180.02562 * 7 6 4 34 34 H 1.08002 * 119.95640 * 0.02658 * 13 12 2 35 35 H 1.08007 * 120.05005 * 180.23356 * 14 13 12 36 36 H 1.07995 * 120.00209 * 0.02562 * 16 15 14 37 37 H 1.08000 * 120.00681 * 359.97438 * 17 16 15 38 38 H 1.08005 * 123.34916 * 359.96802 * 21 20 18 39 39 H 1.08001 * 122.46446 * 180.19667 * 22 21 20 40 40 H 1.08000 * 120.05260 * 179.97438 * 26 15 14 41 41 H 1.07993 * 119.95287 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5544 3.6175 -0.6730 8 14 3.4389 3.4164 -3.4338 9 1 2.8617 2.4160 -4.3673 10 1 2.8018 4.7373 -3.6674 11 1 4.9015 3.5241 -3.6668 12 6 2.1607 -1.2049 -0.0005 13 6 1.4623 -2.4096 -0.0005 14 6 2.1438 -3.5992 -0.0064 15 6 3.5443 -3.6015 -0.0069 16 6 4.2787 -4.8738 -0.0126 17 6 5.6297 -4.8737 -0.0126 18 6 6.3613 -6.1407 -0.0177 19 8 5.7515 -7.1968 -0.0224 20 6 7.8272 -6.1408 -0.0171 21 6 8.6206 -7.2553 -0.0162 22 6 9.9636 -6.9662 -0.0202 23 6 10.2635 -5.6594 -0.0140 24 17 11.8775 -5.0203 -0.0109 25 16 8.8469 -4.7085 -0.0100 26 6 4.2426 -2.3876 -0.0010 27 6 3.5531 -1.2026 0.0048 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5139 32 1 3.1499 1.1383 0.5139 33 1 4.0313 4.4434 -0.8503 34 1 0.3823 -2.4069 -0.0006 35 1 1.6014 -4.5332 -0.0102 36 1 3.7387 -5.8090 -0.0168 37 1 6.1698 -3.9385 -0.0089 38 1 8.2300 -8.2622 -0.0153 39 1 10.7221 -7.7350 -0.0232 40 1 5.3226 -2.3849 -0.0010 41 1 4.0907 -0.2660 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012420986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:06 Heat of formation + Delta-G solvation = 38.890816 kcal Electronic energy + Delta-G solvation = -24992.811604 eV Core-core repulsion = 21183.783639 eV Total energy + Delta-G solvation = -3809.027966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.64849 -39.14557 -37.98820 -36.82707 -36.22119 -33.38687 -32.58691 -30.84577 -30.35375 -28.73563 -27.95398 -26.08515 -25.05352 -23.62250 -22.39646 -21.95462 -20.39202 -19.68410 -19.13377 -18.00513 -16.96297 -16.63312 -16.31246 -15.86284 -15.16688 -14.86917 -14.80779 -14.52164 -14.33119 -14.00947 -13.91108 -13.79945 -13.63509 -13.23766 -12.95533 -12.88087 -12.40918 -12.30568 -12.15011 -11.84150 -11.66270 -11.54737 -11.38338 -11.31353 -11.10295 -11.03404 -10.82234 -10.46944 -10.36041 -10.02183 -9.98430 -9.69798 -9.04966 -8.99415 -8.65495 -8.61825 -8.59765 -6.60490 -6.15929 -4.30794 -0.11279 0.71020 0.86469 1.43414 1.79931 1.93287 1.94370 2.47119 3.18185 3.26993 3.29371 3.31630 3.89250 3.93859 4.29658 4.39457 4.77417 4.96490 4.97549 5.04578 5.09872 5.28578 5.31681 5.41968 5.43705 5.59082 5.70029 5.75269 5.84503 5.87751 5.89195 6.08039 6.19202 6.32564 6.37482 6.42662 6.74155 6.81516 6.96361 7.04385 7.17554 7.31225 7.48347 7.67439 7.96323 8.02176 8.20164 8.77318 9.36849 10.83303 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.009455 B = 0.002178 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.823799 B =12849.961224 C =15250.739497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.599 5.599 3 C 0.243 3.757 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.266 3.734 13 C -0.231 4.231 14 C -0.031 4.031 15 C -0.194 4.194 16 C 0.048 3.952 17 C -0.299 4.299 18 C 0.458 3.542 19 O -0.468 6.468 20 C -0.271 4.271 21 C -0.062 4.062 22 C -0.138 4.138 23 C -0.178 4.178 24 Cl -0.010 7.010 25 S 0.282 5.718 26 C -0.036 4.036 27 C -0.197 4.197 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.119 0.881 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 -17.489 3.112 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.300 5.300 3 C 0.123 3.877 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.154 3.846 13 C -0.254 4.254 14 C -0.050 4.050 15 C -0.196 4.196 16 C 0.030 3.970 17 C -0.318 4.318 18 C 0.341 3.659 19 O -0.349 6.349 20 C -0.391 4.391 21 C -0.094 4.094 22 C -0.171 4.171 23 C -0.324 4.324 24 Cl 0.018 6.982 25 S 0.550 5.450 26 C -0.055 4.055 27 C -0.219 4.219 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.176 0.824 39 H 0.169 0.831 40 H 0.137 0.863 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.840 -15.919 3.165 18.024 hybrid contribution 0.937 -0.913 -1.031 1.666 sum 8.777 -16.831 2.133 19.102 Atomic orbital electron populations 1.21610 0.80947 1.02469 1.00272 1.47252 1.05002 1.05023 1.72740 1.19439 0.92269 0.78477 0.97465 1.21542 1.36860 1.06681 0.92318 0.92091 1.24960 0.95225 0.96192 0.97577 1.69934 1.38027 1.14341 1.30805 0.86446 0.78171 0.78532 0.84387 1.19667 1.20866 1.20712 1.18231 0.91682 0.86132 0.88541 1.20448 0.99485 0.91227 1.14247 1.20820 0.92802 0.97153 0.94270 1.18531 0.93145 0.92069 1.15881 1.22454 0.93683 0.96913 0.83993 1.22962 0.95688 0.97153 1.16025 1.19206 0.85063 0.89454 0.72186 1.90696 1.69943 1.34603 1.39661 1.25460 1.00018 0.97289 1.16297 1.20717 0.91304 0.99873 0.97536 1.20063 0.97274 0.94835 1.04958 1.25213 0.93759 0.99038 1.14363 1.98388 1.17077 1.85746 1.96984 1.83438 0.90294 1.05674 1.65614 1.20970 0.99030 0.91254 0.94259 1.20765 0.92530 0.99153 1.09474 0.93940 0.90955 0.92233 0.94773 0.94246 0.92526 0.86204 0.86468 0.85607 0.85523 0.82406 0.83108 0.86302 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.18 59.85 0.61 2.04 16 2 N -0.60 -11.70 2.98 -180.96 -0.54 -12.24 16 3 C 0.24 5.66 4.90 -5.20 -0.03 5.64 16 4 C -0.54 -13.78 9.39 -34.44 -0.32 -14.11 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.27 4.87 6.55 -83.80 -0.55 4.33 16 13 C -0.23 -3.59 9.16 -39.62 -0.36 -3.95 16 14 C -0.03 -0.44 9.76 -39.32 -0.38 -0.83 16 15 C -0.19 -2.81 5.87 -105.03 -0.62 -3.43 16 16 C 0.05 0.63 9.45 -37.19 -0.35 0.28 16 17 C -0.30 -3.75 9.08 -37.46 -0.34 -4.09 16 18 C 0.46 5.93 7.05 -32.97 -0.23 5.70 16 19 O -0.47 -7.07 16.74 4.97 0.08 -6.99 16 20 C -0.27 -3.01 6.42 -36.73 -0.24 -3.24 16 21 C -0.06 -0.60 10.02 -40.41 -0.40 -1.01 16 22 C -0.14 -1.20 10.08 -41.36 -0.42 -1.61 16 23 C -0.18 -1.65 6.82 29.27 0.20 -1.45 16 24 Cl -0.01 -0.09 29.27 -51.86 -1.52 -1.61 16 25 S 0.28 2.71 22.08 -107.50 -2.37 0.34 16 26 C -0.04 -0.56 9.38 -39.32 -0.37 -0.93 16 27 C -0.20 -3.61 9.16 -39.62 -0.36 -3.97 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.06 0.81 6.17 -51.93 -0.32 0.49 16 31 H 0.03 0.84 8.07 -51.92 -0.42 0.42 16 32 H 0.04 0.97 6.16 -51.93 -0.32 0.65 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.12 1.63 6.11 -52.49 -0.32 1.31 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.13 1.53 7.52 -52.49 -0.39 1.14 16 37 H 0.13 1.46 5.41 -52.49 -0.28 1.17 16 38 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.60 6.16 -52.49 -0.32 1.28 16 41 H 0.14 2.78 6.10 -52.49 -0.32 2.46 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -28.40 382.15 -11.49 -39.89 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.36 Total: 2.23 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -4.26 Total: -19.08 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.20 Total: -35.97 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.08 Total: -6.99 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.37 Total: 0.34 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.40 -11.49 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012420986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.782 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds