Wall clock time and date at job start Tue Mar 31 2020 07:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00345 * 2 1 4 4 C 1.50692 * 109.47209 * 270.00438 * 3 2 1 5 5 H 1.08003 * 120.00492 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00182 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99769 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00388 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46952 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46990 * 119.99528 * 8 6 4 11 11 H 1.48490 * 109.47100 * 239.99649 * 8 6 4 12 12 C 1.39128 * 120.00085 * 180.02562 * 2 1 3 13 13 C 1.39249 * 119.89970 * 359.97438 * 12 2 1 14 14 C 1.37096 * 120.09293 * 179.74397 * 13 12 2 15 15 C 1.40046 * 119.90371 * 0.25470 * 14 13 12 16 16 C 1.46903 * 120.09388 * 179.97438 * 15 14 13 17 17 C 1.35099 * 119.99574 * 180.02562 * 16 15 14 18 18 C 1.46302 * 119.99962 * 179.97438 * 17 16 15 19 19 O 1.21945 * 119.99749 * 0.02562 * 18 17 16 20 20 C 1.46591 * 120.00565 * 180.02562 * 18 17 16 21 21 C 1.36803 * 125.45395 * 179.72588 * 20 18 17 22 22 C 1.37380 * 113.30182 * 179.80318 * 21 20 18 23 23 C 1.34076 * 115.06954 * 0.48572 * 22 21 20 24 24 Cl 1.73598 * 124.52505 * 179.75100 * 23 22 21 25 25 S 1.70610 * 110.94905 * 359.73089 * 23 22 21 26 26 C 1.40048 * 119.81244 * 0.02562 * 15 14 13 27 27 C 1.37098 * 119.89965 * 359.97438 * 26 15 14 28 28 H 1.09004 * 109.46878 * 269.99882 * 1 2 3 29 29 H 1.08997 * 109.47093 * 29.99927 * 1 2 3 30 30 H 1.09001 * 109.47115 * 149.99926 * 1 2 3 31 31 H 1.09010 * 109.46895 * 30.00209 * 3 2 1 32 32 H 1.08999 * 109.47238 * 149.99497 * 3 2 1 33 33 H 0.97008 * 119.99944 * 180.02562 * 7 6 4 34 34 H 1.08002 * 119.95640 * 0.02658 * 13 12 2 35 35 H 1.08007 * 120.05005 * 180.23356 * 14 13 12 36 36 H 1.07995 * 120.00209 * 0.02562 * 16 15 14 37 37 H 1.08000 * 120.00681 * 359.97438 * 17 16 15 38 38 H 1.08005 * 123.34916 * 359.96802 * 21 20 18 39 39 H 1.08001 * 122.46446 * 180.19667 * 22 21 20 40 40 H 1.08000 * 120.05260 * 179.97438 * 26 15 14 41 41 H 1.07993 * 119.95287 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5544 3.6175 -0.6730 8 14 3.4389 3.4164 -3.4338 9 1 2.8617 2.4160 -4.3673 10 1 2.8018 4.7373 -3.6674 11 1 4.9015 3.5241 -3.6668 12 6 2.1607 -1.2049 -0.0005 13 6 1.4623 -2.4096 -0.0005 14 6 2.1438 -3.5992 -0.0064 15 6 3.5443 -3.6015 -0.0069 16 6 4.2787 -4.8738 -0.0126 17 6 5.6297 -4.8737 -0.0126 18 6 6.3613 -6.1407 -0.0177 19 8 5.7515 -7.1968 -0.0224 20 6 7.8272 -6.1408 -0.0171 21 6 8.6206 -7.2553 -0.0162 22 6 9.9636 -6.9662 -0.0202 23 6 10.2635 -5.6594 -0.0140 24 17 11.8775 -5.0203 -0.0109 25 16 8.8469 -4.7085 -0.0100 26 6 4.2426 -2.3876 -0.0010 27 6 3.5531 -1.2026 0.0048 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5139 32 1 3.1499 1.1383 0.5139 33 1 4.0313 4.4434 -0.8503 34 1 0.3823 -2.4069 -0.0006 35 1 1.6014 -4.5332 -0.0102 36 1 3.7387 -5.8090 -0.0168 37 1 6.1698 -3.9385 -0.0089 38 1 8.2300 -8.2622 -0.0153 39 1 10.7221 -7.7350 -0.0232 40 1 5.3226 -2.3849 -0.0010 41 1 4.0907 -0.2660 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012420986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:05 Heat of formation + Delta-G solvation = 27.484765 kcal Electronic energy + Delta-G solvation = -24993.306208 eV Core-core repulsion = 21183.783639 eV Total energy + Delta-G solvation = -3809.522569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.73224 -40.32712 -38.78640 -37.66437 -37.49276 -35.00731 -34.07869 -32.12183 -31.28745 -30.07067 -29.43250 -27.24060 -26.27897 -24.98036 -23.63189 -23.18289 -21.64885 -20.48926 -20.20579 -18.96710 -18.65784 -18.19367 -17.15210 -17.09767 -16.54285 -16.18237 -15.82893 -15.74825 -15.49114 -15.35935 -15.18918 -14.64099 -14.55168 -14.38556 -14.29731 -14.06479 -13.66618 -13.58159 -13.24827 -13.20763 -13.04697 -12.64103 -12.59095 -12.57833 -12.55240 -12.32988 -12.16298 -11.87950 -11.82702 -11.43674 -11.34027 -11.02356 -10.64893 -9.99089 -9.85057 -9.78090 -9.73426 -8.35312 -7.80079 -6.38411 -0.97610 -0.16667 -0.04717 0.67334 0.68577 1.00095 1.06047 1.36695 1.39419 1.48251 1.50840 2.26904 2.33480 2.54356 2.99503 3.05963 3.14411 3.86869 3.99297 4.05022 4.11819 4.23490 4.28630 4.36178 4.38530 4.54296 4.65665 4.68301 4.74136 4.81417 4.90950 4.94868 5.01215 5.11447 5.12698 5.22394 5.28422 5.34930 5.54301 5.63252 5.66934 5.86205 6.03375 6.05190 6.41136 6.47706 6.77499 6.82314 7.33320 8.82142 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.009455 B = 0.002178 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.823799 B =12849.961224 C =15250.739497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.617 5.617 3 C 0.260 3.740 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.237 3.763 13 C -0.224 4.224 14 C -0.028 4.028 15 C -0.184 4.184 16 C 0.043 3.957 17 C -0.290 4.290 18 C 0.461 3.539 19 O -0.493 6.493 20 C -0.297 4.297 21 C -0.053 4.053 22 C -0.136 4.136 23 C -0.180 4.180 24 Cl -0.004 7.004 25 S 0.287 5.713 26 C -0.040 4.040 27 C -0.222 4.222 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.014 0.986 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.134 0.866 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 -19.968 2.441 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.321 5.321 3 C 0.139 3.861 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.564 5.564 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.128 3.872 13 C -0.247 4.247 14 C -0.047 4.047 15 C -0.187 4.187 16 C 0.025 3.975 17 C -0.310 4.310 18 C 0.345 3.655 19 O -0.376 6.376 20 C -0.416 4.416 21 C -0.086 4.086 22 C -0.168 4.168 23 C -0.326 4.326 24 Cl 0.025 6.975 25 S 0.554 5.446 26 C -0.059 4.059 27 C -0.245 4.245 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.172 0.828 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.152 0.848 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.265 -18.424 2.496 20.347 hybrid contribution 0.982 -0.332 -0.781 1.298 sum 9.247 -18.757 1.715 20.982 Atomic orbital electron populations 1.21741 0.78895 1.03053 1.01532 1.47056 1.06165 1.04009 1.74839 1.18907 0.91408 0.80093 0.95711 1.21751 1.36441 1.06540 0.93176 0.93120 1.25732 0.95102 0.96355 1.01259 1.70033 1.38900 1.14819 1.32677 0.85488 0.78051 0.78164 0.79877 1.19477 1.20170 1.20318 1.18504 0.91804 0.86693 0.90171 1.20699 1.00632 0.90350 1.12995 1.21235 0.92673 0.98125 0.92658 1.18747 0.93774 0.92057 1.14112 1.22477 0.93821 0.96603 0.84621 1.23154 0.95831 0.97593 1.14378 1.19330 0.85937 0.88982 0.71228 1.90684 1.70653 1.35245 1.40982 1.25337 0.99313 0.98472 1.18528 1.20943 0.91624 1.00027 0.95991 1.20279 0.97339 0.95133 1.04056 1.25361 0.93952 0.99358 1.13933 1.98396 1.16487 1.85711 1.96910 1.83412 0.90372 1.05189 1.65588 1.21134 0.99922 0.90927 0.93869 1.20652 0.93101 0.98855 1.11888 0.92290 0.92169 0.89790 0.96832 0.96478 0.92354 0.83948 0.82755 0.84247 0.84784 0.81433 0.80773 0.84821 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.82 10.18 127.77 1.30 4.12 16 2 N -0.62 -24.80 2.98 -726.43 -2.16 -26.96 16 3 C 0.26 12.84 4.90 85.63 0.42 13.26 16 4 C -0.54 -28.88 9.39 25.60 0.24 -28.64 16 5 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 6 C 0.02 0.82 5.46 84.65 0.46 1.28 16 7 N -0.92 -52.35 13.29 21.45 0.28 -52.06 16 8 Si 0.96 42.62 29.54 68.60 2.03 44.64 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.24 8.79 6.55 38.47 0.25 9.04 16 13 C -0.22 -6.54 9.16 22.24 0.20 -6.33 16 14 C -0.03 -0.72 9.76 22.44 0.22 -0.50 16 15 C -0.18 -5.02 5.87 -20.13 -0.12 -5.13 16 16 C 0.04 1.03 9.45 23.82 0.23 1.26 16 17 C -0.29 -6.81 9.08 23.65 0.21 -6.59 16 18 C 0.46 11.23 7.05 26.55 0.19 11.42 16 19 O -0.49 -14.14 16.74 -5.14 -0.09 -14.23 16 20 C -0.30 -6.13 6.42 24.11 0.15 -5.97 16 21 C -0.05 -0.92 10.02 21.73 0.22 -0.70 16 22 C -0.14 -2.01 10.08 21.12 0.21 -1.80 16 23 C -0.18 -2.99 6.82 66.87 0.46 -2.53 16 24 Cl 0.00 -0.06 29.27 -2.72 -0.08 -0.14 16 25 S 0.29 5.11 22.08 -56.49 -1.25 3.87 16 26 C -0.04 -1.24 9.38 22.44 0.21 -1.03 16 27 C -0.22 -8.49 9.16 22.24 0.20 -8.28 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 30 H 0.08 2.15 6.17 -2.39 -0.01 2.13 16 31 H 0.01 0.71 8.07 -2.38 -0.02 0.69 16 32 H 0.02 0.91 6.16 -2.39 -0.01 0.90 16 33 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 34 H 0.14 3.44 6.11 -2.91 -0.02 3.42 16 35 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.14 2.99 7.52 -2.91 -0.02 2.97 16 37 H 0.13 2.90 5.41 -2.91 -0.02 2.89 16 38 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.13 3.59 6.16 -2.91 -0.02 3.57 16 41 H 0.11 4.64 6.10 -2.91 -0.02 4.62 16 Total: -1.00 -62.68 382.15 4.88 -57.81 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.08 Total: 14.21 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 5.06 Total: -27.14 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -1.88 Total: -79.02 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.09 Total: -14.23 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -1.25 Total: 3.87 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.08 Total: -0.14 kcal Total: -62.68 4.88 -57.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012420986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.292 kcal (2) G-P(sol) polarization free energy of solvation -62.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds