Wall clock time and date at job start Tue Mar 31 2020 07:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47362 * 300.00121 * 3 2 1 6 6 H 1.48503 * 109.47218 * 60.00153 * 3 2 1 7 7 C 1.38752 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 180.02562 * 7 2 1 9 9 O 1.34917 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99921 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00239 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99797 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46878 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.60700 * 54.99912 * 13 12 10 15 15 S 1.81803 * 109.60688 * 294.66343 * 13 12 10 16 16 C 1.76535 * 101.76117 * 285.28555 * 15 13 12 17 17 C 1.38591 * 119.99462 * 149.79408 * 16 15 13 18 18 C 1.38250 * 119.92527 * 179.70245 * 17 16 15 19 19 C 1.38296 * 119.89897 * 359.93750 * 18 17 16 20 20 C 1.50703 * 119.79298 * 180.15910 * 19 18 17 21 21 F 1.39898 * 109.46589 * 359.97438 * 20 19 18 22 22 F 1.39897 * 109.47260 * 119.99545 * 20 19 18 23 23 F 1.39896 * 109.46762 * 239.99374 * 20 19 18 24 24 C 1.38076 * 120.42131 * 0.17348 * 19 18 17 25 25 C 1.39159 * 120.29105 * 0.03095 * 24 19 18 26 26 N 1.39226 * 119.09542 * 178.96733 * 25 24 19 27 27 C 1.33091 * 126.27377 * 197.85006 * 26 25 24 28 28 O 1.21291 * 118.57188 * 185.53524 * 27 26 25 29 29 H 0.97004 * 120.00196 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46960 * 60.00096 * 12 10 9 31 31 H 1.08999 * 109.46949 * 299.99831 * 12 10 9 32 32 H 1.07998 * 120.03540 * 359.69229 * 17 16 15 33 33 H 1.08003 * 120.05440 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.84970 * 180.02562 * 24 19 18 35 35 H 0.96992 * 116.88668 * 17.65560 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7083 1.3465 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3964 1.2125 7 6 2.0081 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3809 -4.8393 -0.0023 13 6 2.4347 -5.9485 -0.0028 14 1 3.1137 -5.8085 0.8384 15 16 3.3730 -5.8978 -1.5592 16 6 2.2110 -6.5758 -2.7022 17 6 2.2300 -6.1757 -4.0289 18 6 1.3233 -6.7121 -4.9241 19 6 0.4004 -7.6477 -4.4934 20 6 -0.5845 -8.2335 -5.4721 21 9 -0.3689 -7.6797 -6.7385 22 9 -0.4120 -9.6205 -5.5336 23 9 -1.8872 -7.9439 -5.0523 24 6 0.3754 -8.0483 -3.1722 25 6 1.2794 -7.5134 -2.2594 26 7 1.2180 -7.9189 -0.9289 27 6 1.7575 -7.2890 0.1120 28 8 1.7059 -7.8195 1.2015 29 1 -0.4850 0.8401 0.0004 30 1 0.7579 -4.9291 -0.8920 31 1 0.7586 -4.9303 0.8879 32 1 2.9522 -5.4455 -4.3630 33 1 1.3360 -6.4015 -5.9585 34 1 -0.3489 -8.7798 -2.8460 35 1 0.7333 -8.7379 -0.7419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012426631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:55 Heat of formation + Delta-G solvation = -226.505074 kcal Electronic energy + Delta-G solvation = -29381.754953 eV Core-core repulsion = 24442.819558 eV Total energy + Delta-G solvation = -4938.935395 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.043 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.45114 -47.96940 -47.90290 -41.14092 -39.43935 -39.00413 -35.80360 -35.51676 -33.03696 -32.30790 -32.18774 -30.26239 -27.06923 -26.40749 -24.86830 -23.66780 -22.96137 -20.82352 -20.10583 -19.03856 -18.77082 -18.73282 -18.13186 -17.81317 -17.56863 -17.28967 -16.46756 -15.89274 -15.52504 -15.20558 -14.92234 -14.81208 -14.65302 -14.52083 -14.41013 -14.34259 -14.23526 -14.06318 -14.05764 -13.91148 -13.70831 -13.29617 -12.95024 -12.45400 -12.19108 -12.00335 -11.65448 -11.52958 -11.30015 -11.19220 -11.04062 -10.47503 -10.46778 -10.43369 -9.90018 -9.84874 -9.17840 -8.78581 -8.64182 -7.62095 -6.46986 -4.15041 0.24590 0.65884 1.13465 1.84582 2.21144 2.26368 2.54548 2.98319 3.04816 3.16185 3.23422 3.38605 3.41625 3.61700 3.75171 3.94872 4.11188 4.20812 4.38172 4.57615 4.62599 4.70474 4.87768 5.00366 5.09813 5.22295 5.27458 5.57106 5.64822 5.67124 5.71483 6.05789 6.14043 6.59747 6.67842 7.34094 7.43757 7.87970 8.60498 9.01708 9.75092 10.70764 Molecular weight = 361.04amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.003024 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.019279 B = 9257.993596 C =10605.188475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.381 4.381 8 H 0.099 0.901 9 O -0.210 6.210 10 C 0.402 3.598 11 O -0.541 6.541 12 C -0.096 4.096 13 C -0.086 4.086 14 H 0.163 0.837 15 S -0.015 6.015 16 C -0.113 4.113 17 C -0.056 4.056 18 C -0.079 4.079 19 C -0.156 4.156 20 C 0.512 3.488 21 F -0.174 7.174 22 F -0.177 7.177 23 F -0.174 7.174 24 C -0.091 4.091 25 C 0.157 3.843 26 N -0.653 5.653 27 C 0.535 3.465 28 O -0.503 6.503 29 H 0.270 0.730 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -17.278 -10.553 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.116 0.884 9 O -0.117 6.117 10 C 0.248 3.752 11 O -0.438 6.438 12 C -0.136 4.136 13 C -0.217 4.217 14 H 0.180 0.820 15 S 0.231 5.769 16 C -0.228 4.228 17 C -0.080 4.080 18 C -0.100 4.100 19 C -0.161 4.161 20 C 0.457 3.543 21 F -0.156 7.156 22 F -0.158 7.158 23 F -0.156 7.156 24 C -0.114 4.114 25 C 0.055 3.945 26 N -0.296 5.296 27 C 0.320 3.680 28 O -0.377 6.377 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.990 -16.724 -9.963 19.492 hybrid contribution -1.387 -0.120 0.089 1.395 sum -0.397 -16.844 -9.874 19.529 Atomic orbital electron populations 1.69998 1.06037 1.27699 1.46321 1.25348 0.95816 0.98902 0.96113 0.85615 0.79500 0.80000 0.78164 1.18864 1.20124 1.20168 1.21294 0.92456 0.79534 1.52409 0.88385 1.83853 1.39265 1.13274 1.75315 1.22408 0.86605 0.86677 0.79546 1.90575 1.15068 1.87610 1.50507 1.21162 0.96713 0.89779 1.05967 1.23664 1.01709 0.93608 1.02736 0.81974 1.86594 1.16279 1.75936 0.98097 1.22036 1.00979 1.00239 0.99592 1.20837 0.98412 0.98536 0.90219 1.20992 0.93437 0.94622 1.00975 1.19658 0.99811 1.02889 0.93720 1.18189 0.80203 0.75970 0.79905 1.93179 1.94632 1.85267 1.42493 1.93224 1.95314 1.30781 1.96474 1.93242 1.39271 1.93153 1.89888 1.20417 0.98126 1.01395 0.91446 1.17255 0.96752 0.96640 0.83859 1.42979 1.54387 1.28005 1.04250 1.19839 0.77598 0.86954 0.83654 1.90836 1.56251 1.65662 1.24992 0.92051 0.88460 0.87139 0.83080 0.83391 0.84011 0.74763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.73 13.67 55.48 0.76 -23.98 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.38 -10.85 9.64 30.92 0.30 -10.55 16 8 H 0.10 2.80 6.86 -52.48 -0.36 2.44 16 9 O -0.21 -5.76 9.75 -20.70 -0.20 -5.96 16 10 C 0.40 9.18 7.63 36.01 0.27 9.45 16 11 O -0.54 -13.12 14.06 -19.05 -0.27 -13.38 16 12 C -0.10 -1.63 5.25 -27.88 -0.15 -1.78 16 13 C -0.09 -1.29 2.41 -27.92 -0.07 -1.35 16 14 H 0.16 2.52 7.95 -51.93 -0.41 2.11 16 15 S -0.02 -0.22 20.15 -107.50 -2.17 -2.39 16 16 C -0.11 -1.35 5.74 -39.02 -0.22 -1.58 16 17 C -0.06 -0.58 9.78 -39.45 -0.39 -0.97 16 18 C -0.08 -0.71 9.43 -39.56 -0.37 -1.08 16 19 C -0.16 -1.44 5.37 -104.66 -0.56 -2.00 16 20 C 0.51 4.64 3.31 36.01 0.12 4.76 16 21 F -0.17 -1.60 15.95 2.25 0.04 -1.56 16 22 F -0.18 -1.61 17.23 2.25 0.04 -1.57 16 23 F -0.17 -1.74 17.23 2.25 0.04 -1.70 16 24 C -0.09 -0.82 9.32 -39.30 -0.37 -1.18 16 25 C 0.16 1.68 6.58 -83.73 -0.55 1.13 16 26 N -0.65 -6.95 5.09 -10.23 -0.05 -7.00 16 27 C 0.53 7.22 6.86 -11.77 -0.08 7.14 16 28 O -0.50 -7.96 17.78 5.55 0.10 -7.86 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.10 1.54 7.92 -51.93 -0.41 1.13 16 31 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.15 1.03 7.14 -52.48 -0.37 0.66 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.41 3.37 8.54 -40.82 -0.35 3.03 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -32.85 339.57 -6.09 -38.94 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.31 Total: 2.56 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.16 Total: 3.05 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.71 Total: -30.98 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.37 Total: -27.21 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.11 Total: -4.83 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.17 Total: -2.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.85 -6.09 -38.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012426631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.566 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds