Wall clock time and date at job start Tue Mar 31 2020 07:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47362 * 300.00121 * 3 2 1 6 6 H 1.48503 * 109.47218 * 60.00153 * 3 2 1 7 7 C 1.38752 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 180.02562 * 7 2 1 9 9 O 1.34917 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99921 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00239 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99797 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46878 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.60700 * 54.99912 * 13 12 10 15 15 S 1.81803 * 109.60688 * 294.66343 * 13 12 10 16 16 C 1.76535 * 101.76117 * 285.28555 * 15 13 12 17 17 C 1.38591 * 119.99462 * 149.79408 * 16 15 13 18 18 C 1.38250 * 119.92527 * 179.70245 * 17 16 15 19 19 C 1.38296 * 119.89897 * 359.93750 * 18 17 16 20 20 C 1.50703 * 119.79298 * 180.15910 * 19 18 17 21 21 F 1.39898 * 109.46589 * 359.97438 * 20 19 18 22 22 F 1.39897 * 109.47260 * 119.99545 * 20 19 18 23 23 F 1.39896 * 109.46762 * 239.99374 * 20 19 18 24 24 C 1.38076 * 120.42131 * 0.17348 * 19 18 17 25 25 C 1.39159 * 120.29105 * 0.03095 * 24 19 18 26 26 N 1.39226 * 119.09542 * 178.96733 * 25 24 19 27 27 C 1.33091 * 126.27377 * 197.85006 * 26 25 24 28 28 O 1.21291 * 118.57188 * 185.53524 * 27 26 25 29 29 H 0.97004 * 120.00196 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46960 * 60.00096 * 12 10 9 31 31 H 1.08999 * 109.46949 * 299.99831 * 12 10 9 32 32 H 1.07998 * 120.03540 * 359.69229 * 17 16 15 33 33 H 1.08003 * 120.05440 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.84970 * 180.02562 * 24 19 18 35 35 H 0.96992 * 116.88668 * 17.65560 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7083 1.3465 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3964 1.2125 7 6 2.0081 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3809 -4.8393 -0.0023 13 6 2.4347 -5.9485 -0.0028 14 1 3.1137 -5.8085 0.8384 15 16 3.3730 -5.8978 -1.5592 16 6 2.2110 -6.5758 -2.7022 17 6 2.2300 -6.1757 -4.0289 18 6 1.3233 -6.7121 -4.9241 19 6 0.4004 -7.6477 -4.4934 20 6 -0.5845 -8.2335 -5.4721 21 9 -0.3689 -7.6797 -6.7385 22 9 -0.4120 -9.6205 -5.5336 23 9 -1.8872 -7.9439 -5.0523 24 6 0.3754 -8.0483 -3.1722 25 6 1.2794 -7.5134 -2.2594 26 7 1.2180 -7.9189 -0.9289 27 6 1.7575 -7.2890 0.1120 28 8 1.7059 -7.8195 1.2015 29 1 -0.4850 0.8401 0.0004 30 1 0.7579 -4.9291 -0.8920 31 1 0.7586 -4.9303 0.8879 32 1 2.9522 -5.4455 -4.3630 33 1 1.3360 -6.4015 -5.9585 34 1 -0.3489 -8.7798 -2.8460 35 1 0.7333 -8.7379 -0.7419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012426631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:54 Heat of formation + Delta-G solvation = -246.212185 kcal Electronic energy + Delta-G solvation = -29382.609517 eV Core-core repulsion = 24442.819558 eV Total energy + Delta-G solvation = -4939.789959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.043 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.18140 -48.69462 -48.63993 -42.15971 -41.01604 -40.24876 -37.45383 -36.74034 -34.47374 -34.23034 -33.13851 -31.11689 -28.56009 -27.37428 -26.62997 -24.52478 -23.84781 -22.15103 -21.52325 -19.97663 -19.82755 -19.56933 -19.49685 -19.07822 -18.69987 -18.41544 -17.80330 -17.20032 -17.01328 -16.42449 -16.18445 -16.03631 -15.79747 -15.55524 -15.50038 -15.26696 -15.07046 -15.04550 -14.80551 -14.78341 -14.73417 -14.59715 -14.24015 -13.83784 -13.58505 -13.32845 -13.00595 -12.90240 -12.54644 -12.37905 -12.20172 -12.16895 -12.10878 -11.96556 -11.46470 -11.18407 -10.76333 -10.68366 -9.63623 -8.73919 -8.52579 -6.31726 -0.63758 -0.15447 0.07847 0.82870 1.12713 1.29801 1.36677 1.40630 1.54555 1.62823 1.68558 2.08554 2.17234 2.49523 2.66599 2.90407 2.98989 3.01072 3.20025 3.38396 3.42116 3.73236 3.87062 3.90326 4.09624 4.20825 4.31617 4.42761 4.54555 4.71564 4.89219 4.93594 5.19879 5.24253 5.31586 5.72067 5.84087 6.45742 6.64915 6.93146 7.75100 8.68008 Molecular weight = 361.04amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.003024 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.019279 B = 9257.993596 C =10605.188475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 1.014 2.986 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.414 4.414 8 H 0.086 0.914 9 O -0.243 6.243 10 C 0.405 3.595 11 O -0.556 6.556 12 C -0.084 4.084 13 C -0.083 4.083 14 H 0.152 0.848 15 S -0.055 6.055 16 C -0.124 4.124 17 C -0.062 4.062 18 C -0.070 4.070 19 C -0.156 4.156 20 C 0.518 3.482 21 F -0.174 7.174 22 F -0.175 7.175 23 F -0.178 7.178 24 C -0.080 4.080 25 C 0.149 3.851 26 N -0.637 5.637 27 C 0.546 3.454 28 O -0.529 6.529 29 H 0.278 0.722 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -17.971 -11.889 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.204 4.204 3 Si 0.834 3.166 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.104 0.896 9 O -0.152 6.152 10 C 0.252 3.748 11 O -0.452 6.452 12 C -0.124 4.124 13 C -0.214 4.214 14 H 0.169 0.831 15 S 0.191 5.809 16 C -0.240 4.240 17 C -0.085 4.085 18 C -0.091 4.091 19 C -0.161 4.161 20 C 0.463 3.537 21 F -0.155 7.155 22 F -0.156 7.156 23 F -0.160 7.160 24 C -0.101 4.101 25 C 0.048 3.952 26 N -0.281 5.281 27 C 0.330 3.670 28 O -0.405 6.405 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.188 0.812 34 H 0.188 0.812 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.295 -17.466 -11.338 20.825 hybrid contribution -1.182 -0.054 0.361 1.237 sum -0.887 -17.520 -10.977 20.694 Atomic orbital electron populations 1.70078 1.07629 1.29231 1.47167 1.26481 0.96812 1.02252 0.94828 0.84603 0.77943 0.74994 0.79091 1.18694 1.18527 1.18790 1.21453 0.92225 0.80817 1.54487 0.89645 1.83874 1.40296 1.14144 1.76883 1.23457 0.86682 0.87532 0.77133 1.90556 1.16132 1.88120 1.50400 1.21167 0.97104 0.86775 1.07326 1.23530 1.01091 0.94014 1.02787 0.83067 1.86657 1.18037 1.77210 0.99034 1.22019 1.01171 1.01287 0.99487 1.20999 0.98952 0.98819 0.89774 1.21230 0.92370 0.93758 1.01727 1.19798 0.99670 1.02668 0.93922 1.18069 0.79851 0.75958 0.79781 1.93185 1.94597 1.85272 1.42465 1.93233 1.95275 1.30654 1.96459 1.93241 1.39590 1.93196 1.89936 1.20662 0.97627 1.00976 0.90885 1.17301 0.97103 0.96930 0.83905 1.42738 1.53532 1.28107 1.03752 1.19391 0.77457 0.86282 0.83852 1.90832 1.57467 1.66145 1.26049 0.91297 0.86993 0.85633 0.82439 0.81233 0.81243 0.72999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.32 13.67 21.62 0.30 -52.02 16 2 C 0.00 -0.20 5.49 84.87 0.47 0.27 16 3 Si 1.01 42.47 29.55 68.60 2.03 44.50 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.41 -24.26 9.64 67.94 0.66 -23.61 16 8 H 0.09 5.06 6.86 -2.91 -0.02 5.04 16 9 O -0.24 -13.75 9.75 14.88 0.15 -13.60 16 10 C 0.41 18.96 7.63 71.24 0.54 19.51 16 11 O -0.56 -27.77 14.06 20.77 0.29 -27.48 16 12 C -0.08 -2.84 5.25 29.85 0.16 -2.69 16 13 C -0.08 -2.49 2.41 29.82 0.07 -2.42 16 14 H 0.15 4.86 7.95 -2.39 -0.02 4.84 16 15 S -0.05 -1.60 20.15 -56.49 -1.14 -2.74 16 16 C -0.12 -2.84 5.74 22.63 0.13 -2.71 16 17 C -0.06 -1.19 9.78 22.36 0.22 -0.97 16 18 C -0.07 -1.07 9.43 22.29 0.21 -0.86 16 19 C -0.16 -2.41 5.37 -19.89 -0.11 -2.52 16 20 C 0.52 7.88 3.31 71.24 0.24 8.12 16 21 F -0.17 -2.71 15.95 44.97 0.72 -1.99 16 22 F -0.17 -2.68 17.23 44.97 0.77 -1.91 16 23 F -0.18 -3.06 17.23 44.97 0.77 -2.29 16 24 C -0.08 -1.18 9.32 22.45 0.21 -0.97 16 25 C 0.15 2.87 6.58 38.47 0.25 3.12 16 26 N -0.64 -12.37 5.09 -305.61 -1.55 -13.93 16 27 C 0.55 14.28 6.86 87.89 0.60 14.88 16 28 O -0.53 -16.37 17.78 -3.06 -0.05 -16.42 16 29 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.11 3.48 7.92 -2.39 -0.02 3.46 16 31 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.17 1.85 7.14 -2.91 -0.02 1.82 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.43 5.92 8.54 -92.71 -0.79 5.13 16 Total: -1.00 -72.14 339.57 6.34 -65.80 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.41 Total: 12.92 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 3.65 Total: 9.16 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -1.26 Total: -65.95 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: 0.38 Total: -57.50 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 2.27 Total: -6.19 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -1.14 Total: -2.74 kcal Total: -72.14 6.34 -65.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012426631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.415 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds