Wall clock time and date at job start Tue Mar 31 2020 07:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99997 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99990 * 3 2 1 7 7 C 1.38751 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99894 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7 13 13 C 1.52994 * 109.47364 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.60798 * 304.65997 * 13 12 10 15 15 S 1.81805 * 109.61032 * 64.99541 * 13 12 10 16 16 C 1.76526 * 101.76035 * 74.54618 * 15 13 12 17 17 C 1.38589 * 120.00166 * 210.20603 * 16 15 13 18 18 C 1.38246 * 119.93411 * 180.29741 * 17 16 15 19 19 C 1.38309 * 119.89304 * 0.07272 * 18 17 16 20 20 C 1.50696 * 119.78575 * 179.84053 * 19 18 17 21 21 F 1.39899 * 109.47565 * 359.97438 * 20 19 18 22 22 F 1.39906 * 109.47099 * 120.00185 * 20 19 18 23 23 F 1.39901 * 109.46995 * 239.99689 * 20 19 18 24 24 C 1.38055 * 120.42206 * 359.81521 * 19 18 17 25 25 C 1.39166 * 120.29948 * 359.97436 * 24 19 18 26 26 N 1.39216 * 119.10232 * 181.02921 * 25 24 19 27 27 C 1.32967 * 126.22188 * 162.36175 * 26 25 24 28 28 O 1.21295 * 118.47523 * 174.30398 * 27 26 25 29 29 H 0.96998 * 120.00069 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47160 * 299.99718 * 12 10 9 31 31 H 1.09003 * 109.47502 * 59.99504 * 12 10 9 32 32 H 1.08000 * 120.02948 * 0.27198 * 17 16 15 33 33 H 1.07996 * 120.05793 * 180.09457 * 18 17 16 34 34 H 1.08005 * 119.85403 * 179.97438 * 24 19 18 35 35 H 0.96997 * 116.88764 * 342.34780 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 1.2834 2.7465 -0.0006 5 1 3.1022 1.6964 -1.2125 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4331 0.0001 12 6 1.3810 -4.8392 0.0000 13 6 2.4347 -5.9485 -0.0006 14 1 3.1099 -5.8112 -0.8451 15 16 3.3798 -5.8930 1.5515 16 6 2.2209 -6.5626 2.7026 17 6 2.2466 -6.1565 4.0274 18 6 1.3423 -6.6863 4.9289 19 6 0.4153 -7.6217 4.5064 20 6 -0.5669 -8.2004 5.4920 21 9 -0.3439 -7.6420 6.7552 22 9 -1.8708 -7.9094 5.0765 23 9 -0.3976 -9.5875 5.5593 24 6 0.3837 -8.0282 3.1874 25 6 1.2851 -7.5000 2.2681 26 7 1.2170 -7.9115 0.9399 27 6 1.7568 -7.2895 -0.1040 28 8 1.7007 -7.8270 -1.1899 29 1 -0.4850 -0.8400 0.0004 30 1 0.7579 -4.9299 0.8897 31 1 0.7584 -4.9295 -0.8902 32 1 2.9725 -5.4271 4.3551 33 1 1.3595 -6.3702 5.9614 34 1 -0.3439 -8.7596 2.8675 35 1 0.7293 -8.7301 0.7588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012426632.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:59 Heat of formation + Delta-G solvation = -232.087292 kcal Electronic energy + Delta-G solvation = -29433.626379 eV Core-core repulsion = 24494.448921 eV Total energy + Delta-G solvation = -4939.177458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.043 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.48420 -48.00138 -47.93685 -41.20967 -39.50664 -39.11567 -35.86718 -35.68948 -33.12334 -32.35735 -32.16107 -30.31406 -27.06959 -26.40138 -24.49349 -23.71528 -23.00581 -20.91841 -20.31560 -19.09079 -18.80466 -18.77727 -18.18766 -18.08588 -17.62013 -17.32405 -16.47897 -15.96510 -15.62402 -15.31102 -15.07514 -14.84791 -14.77565 -14.66905 -14.37569 -14.33023 -14.27143 -14.09169 -14.01868 -13.82430 -13.76299 -13.42847 -13.03844 -12.70706 -12.32789 -12.08515 -11.59398 -11.32881 -11.22080 -11.05046 -10.94198 -10.52271 -10.50140 -10.27681 -9.93094 -9.82631 -9.22857 -8.83605 -8.59436 -7.67592 -6.80532 -4.18335 0.19467 0.60887 1.07376 1.79017 2.15710 2.21535 2.49559 2.93350 3.12601 3.25886 3.34724 3.42549 3.47897 3.56420 3.71169 3.97547 4.07481 4.16932 4.33670 4.51880 4.54155 4.64943 4.81906 4.95400 5.11447 5.17388 5.22585 5.46865 5.55335 5.60045 5.66781 6.00712 6.08839 6.41462 6.62408 7.38207 7.54276 8.33432 8.39229 8.97302 9.62892 10.63868 Molecular weight = 361.04amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.003042 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.909323 B = 9202.864865 C =10551.839641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.014 3.986 3 Si 1.098 2.902 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.462 4.462 8 H 0.090 0.910 9 O -0.233 6.233 10 C 0.404 3.596 11 O -0.535 6.535 12 C -0.096 4.096 13 C -0.085 4.085 14 H 0.163 0.837 15 S -0.014 6.014 16 C -0.113 4.113 17 C -0.056 4.056 18 C -0.079 4.079 19 C -0.156 4.156 20 C 0.512 3.488 21 F -0.174 7.174 22 F -0.174 7.174 23 F -0.176 7.176 24 C -0.091 4.091 25 C 0.156 3.844 26 N -0.652 5.652 27 C 0.534 3.466 28 O -0.503 6.503 29 H 0.280 0.720 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 -17.807 10.618 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.191 4.191 3 Si 0.922 3.078 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.538 4.538 8 H 0.107 0.893 9 O -0.141 6.141 10 C 0.250 3.750 11 O -0.431 6.431 12 C -0.136 4.136 13 C -0.217 4.217 14 H 0.180 0.820 15 S 0.232 5.768 16 C -0.229 4.229 17 C -0.080 4.080 18 C -0.100 4.100 19 C -0.160 4.160 20 C 0.457 3.543 21 F -0.155 7.155 22 F -0.156 7.156 23 F -0.158 7.158 24 C -0.114 4.114 25 C 0.054 3.946 26 N -0.295 5.295 27 C 0.319 3.681 28 O -0.377 6.377 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.197 -15.741 10.021 18.699 hybrid contribution -1.494 -2.704 -0.080 3.091 sum -0.297 -18.445 9.941 20.956 Atomic orbital electron populations 1.70563 1.06624 1.31496 1.42654 1.26625 0.96737 1.01178 0.94581 0.83081 0.74409 0.72990 0.77330 1.19872 1.20682 1.20616 1.22123 0.93821 0.80929 1.56890 0.89260 1.83575 1.40372 1.14080 1.76061 1.22243 0.86615 0.86205 0.79980 1.90578 1.14955 1.87414 1.50156 1.21158 0.96794 0.89788 1.05853 1.23649 1.01593 0.93534 1.02925 0.81957 1.86623 1.16096 1.76232 0.97853 1.22042 1.00954 1.00288 0.99647 1.20841 0.98455 0.98532 0.90180 1.21002 0.93386 0.94618 1.00980 1.19662 0.99796 1.02887 0.93697 1.18184 0.80148 0.75935 0.79994 1.93181 1.94503 1.85097 1.42757 1.93245 1.39161 1.93129 1.90017 1.93226 1.95350 1.30729 1.96459 1.20417 0.98162 1.01375 0.91402 1.17264 0.96778 0.96647 0.83917 1.42949 1.54143 1.28193 1.04250 1.19788 0.77667 0.87009 0.83642 1.90840 1.56224 1.65267 1.25402 0.91004 0.88535 0.87206 0.83071 0.83339 0.83977 0.74694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.69 55.48 0.76 -24.92 16 2 C 0.01 0.40 5.49 -17.53 -0.10 0.30 16 3 Si 1.10 23.97 29.92 -169.99 -5.09 18.88 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.46 -13.27 9.64 30.92 0.30 -12.98 16 8 H 0.09 2.61 6.86 -52.49 -0.36 2.25 16 9 O -0.23 -6.31 9.15 -20.72 -0.19 -6.50 16 10 C 0.40 9.21 7.62 36.00 0.27 9.49 16 11 O -0.53 -13.10 14.05 -19.05 -0.27 -13.37 16 12 C -0.10 -1.60 5.25 -27.89 -0.15 -1.75 16 13 C -0.09 -1.28 2.42 -27.93 -0.07 -1.35 16 14 H 0.16 2.52 7.96 -51.93 -0.41 2.10 16 15 S -0.01 -0.21 20.11 -107.50 -2.16 -2.37 16 16 C -0.11 -1.36 5.74 -39.02 -0.22 -1.58 16 17 C -0.06 -0.58 9.78 -39.45 -0.39 -0.97 16 18 C -0.08 -0.70 9.43 -39.55 -0.37 -1.07 16 19 C -0.16 -1.41 5.37 -104.67 -0.56 -1.97 16 20 C 0.51 4.58 3.31 36.00 0.12 4.70 16 21 F -0.17 -1.58 15.95 2.25 0.04 -1.54 16 22 F -0.17 -1.71 17.23 2.25 0.04 -1.67 16 23 F -0.18 -1.59 17.23 2.25 0.04 -1.55 16 24 C -0.09 -0.80 9.32 -39.30 -0.37 -1.17 16 25 C 0.16 1.65 6.58 -83.73 -0.55 1.10 16 26 N -0.65 -6.85 5.08 -10.26 -0.05 -6.90 16 27 C 0.53 7.15 6.85 -11.83 -0.08 7.07 16 28 O -0.50 -7.90 17.78 5.54 0.10 -7.80 16 29 H 0.28 8.24 7.97 -40.82 -0.33 7.91 16 30 H 0.10 1.50 7.91 -51.93 -0.41 1.09 16 31 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.15 1.02 7.14 -52.49 -0.37 0.65 16 34 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.41 3.32 8.54 -40.82 -0.35 2.97 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -33.27 338.96 -6.14 -39.41 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.30 Total: 3.40 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.16 Total: -0.18 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.71 Total: -31.82 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.36 Total: -27.66 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.11 Total: -4.77 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.09 Total: 18.88 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.16 Total: -2.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.27 -6.14 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012426632.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.678 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds