Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35837 * 117.00068 * 2 1 4 4 C 1.39822 * 119.62100 * 0.02562 * 3 2 1 5 5 C 1.36050 * 120.79244 * 180.02562 * 4 3 2 6 6 C 1.40381 * 119.86785 * 359.97438 * 5 4 3 7 7 C 1.40998 * 121.12929 * 180.02562 * 6 5 4 8 8 C 1.50694 * 120.83049 * 359.97438 * 7 6 5 9 9 C 1.36221 * 118.33834 * 179.63012 * 7 6 5 10 10 C 1.40251 * 119.89802 * 0.59312 * 9 7 6 11 11 S 1.76193 * 119.24794 * 179.70726 * 10 9 7 12 12 C 1.81002 * 100.00049 * 179.73009 * 11 10 9 13 13 C 1.50701 * 109.47156 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 15 13 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47235 * 59.99855 * 22 20 18 24 24 H 1.48500 * 109.47168 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47142 * 299.99797 * 22 20 18 26 26 N 1.31825 * 121.50097 * 359.43443 * 10 9 7 27 27 C 1.33841 * 121.23340 * 0.25151 * 26 10 9 28 28 C 1.37637 * 119.62668 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47697 * 300.00340 * 1 2 3 31 31 H 1.08995 * 109.47229 * 60.01014 * 1 2 3 32 32 H 1.07997 * 119.60514 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.06761 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47263 * 89.99976 * 8 7 6 35 35 H 1.08996 * 109.47313 * 210.00094 * 8 7 6 36 36 H 1.09008 * 109.46705 * 329.99937 * 8 7 6 37 37 H 1.07999 * 120.05100 * 180.27943 * 9 7 6 38 38 H 1.09002 * 109.47115 * 60.00094 * 12 11 10 39 39 H 1.09001 * 109.46925 * 300.00251 * 12 11 10 40 40 H 1.08995 * 109.47620 * 89.99771 * 16 15 13 41 41 H 1.09006 * 109.47028 * 209.99878 * 16 15 13 42 42 H 1.09002 * 109.47109 * 329.99455 * 16 15 13 43 43 H 1.09000 * 109.47018 * 209.99971 * 17 15 13 44 44 H 1.09000 * 109.47828 * 330.00266 * 17 15 13 45 45 H 0.97001 * 119.99961 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.19297 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2764 2.3779 0.0005 5 6 1.8692 3.6025 0.0000 6 6 3.2695 3.7014 -0.0005 7 6 3.9116 4.9566 -0.0005 8 6 3.1113 6.2335 -0.0005 9 6 5.2735 4.9863 0.0067 10 6 5.9989 3.7860 0.0013 11 16 7.7599 3.8444 0.0029 12 6 8.1331 2.0733 0.0027 13 6 9.6270 1.8747 0.0047 14 8 10.3665 2.8360 0.0065 15 7 10.1412 0.6289 0.0054 16 6 9.2479 -0.5322 0.0038 17 6 11.5934 0.4359 0.0079 18 6 12.0889 0.3695 1.4296 19 1 11.3919 0.4622 2.2492 20 6 13.4322 0.1904 1.6838 21 7 14.2809 0.0770 0.6856 22 14 14.0463 0.1074 3.4460 23 1 13.3942 -1.0295 4.1444 24 1 15.5182 -0.0894 3.4485 25 1 13.7145 1.3743 4.1460 26 7 5.3933 2.6151 0.0003 27 6 4.0579 2.5245 -0.0005 28 6 3.4206 1.2734 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8900 32 1 0.1988 2.3068 0.0014 33 1 1.2636 4.4968 0.0009 34 1 2.9183 6.5414 1.0272 35 1 3.6724 7.0140 -0.5143 36 1 2.1642 6.0686 -0.5144 37 1 5.7938 5.9327 0.0115 38 1 7.7061 1.6120 -0.8878 39 1 7.7044 1.6116 0.8922 40 1 9.0281 -0.8201 -1.0242 41 1 9.7310 -1.3629 0.5184 42 1 8.3202 -0.2776 0.5162 43 1 11.8372 -0.4941 -0.5056 44 1 12.0718 1.2703 -0.5050 45 1 15.2259 -0.0494 0.8644 46 1 4.0060 0.3657 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012532038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -15.626701 kcal Electronic energy + Delta-G solvation = -28344.019943 eV Core-core repulsion = 24325.470513 eV Total energy + Delta-G solvation = -4018.549431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.19862 -39.55144 -38.91989 -36.26985 -34.89753 -34.86614 -32.65589 -31.00540 -30.28373 -30.02752 -28.11264 -27.60274 -27.33449 -25.65702 -24.39187 -23.44365 -22.68290 -21.43250 -19.26120 -18.62060 -18.10986 -17.28264 -16.74743 -16.57398 -16.32472 -16.16739 -15.82985 -15.29287 -15.15423 -14.83181 -14.75356 -14.44403 -14.09531 -14.09046 -13.56969 -13.46715 -13.13612 -13.05633 -12.77741 -12.71457 -12.51753 -12.51552 -12.17507 -11.91350 -11.86672 -11.79104 -11.48415 -11.35500 -11.19264 -10.89507 -10.59625 -10.41496 -10.26935 -10.15719 -9.69527 -9.64645 -9.27029 -9.07511 -8.42204 -8.24798 -7.71122 -7.50098 -6.03373 -4.08282 0.08282 0.58133 1.45541 1.71735 2.18930 2.52598 2.84034 3.29074 3.34065 3.37974 3.42517 3.80159 3.94207 4.13031 4.31011 4.37813 4.46020 4.56006 4.58289 4.65298 4.71388 4.75507 4.92906 5.03516 5.04443 5.09210 5.16361 5.27467 5.29303 5.31342 5.46990 5.55635 5.58208 5.68721 5.73026 5.76482 5.90345 5.94936 6.05400 6.11195 6.23252 6.39104 6.97696 7.00064 7.41937 7.49388 7.59929 7.92157 8.22760 8.31914 8.85021 9.00669 9.56549 11.04746 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002154 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.133302 B =12997.074964 C =14365.410386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.146 3.854 4 C -0.201 4.201 5 C -0.049 4.049 6 C -0.144 4.144 7 C -0.001 4.001 8 C -0.120 4.120 9 C -0.168 4.168 10 C 0.152 3.848 11 S 0.030 5.970 12 C -0.136 4.136 13 C 0.518 3.482 14 O -0.529 6.529 15 N -0.594 5.594 16 C 0.080 3.920 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 N -0.498 5.498 27 C 0.188 3.812 28 C -0.146 4.146 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.264 0.736 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.296 6.153 -3.170 33.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.099 3.901 4 C -0.221 4.221 5 C -0.068 4.068 6 C -0.148 4.148 7 C -0.011 4.011 8 C -0.176 4.176 9 C -0.192 4.192 10 C -0.111 4.111 11 S 0.271 5.729 12 C -0.288 4.288 13 C 0.302 3.698 14 O -0.407 6.407 15 N -0.326 5.326 16 C -0.064 4.064 17 C 0.127 3.873 18 C -0.567 4.567 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 N -0.214 5.214 27 C 0.064 3.936 28 C -0.167 4.167 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -30.256 6.503 -3.220 31.114 hybrid contribution -1.292 -0.544 1.010 1.728 sum -31.548 5.959 -2.209 32.181 Atomic orbital electron populations 1.23097 0.78199 1.04208 1.01372 1.86102 1.21504 1.26642 1.88389 1.18840 0.91856 0.84190 0.95194 1.21022 1.00295 0.92250 1.08502 1.20786 0.92979 0.97513 0.95482 1.18573 0.94428 0.93544 1.08296 1.19995 0.93578 0.94479 0.93012 1.20894 0.99814 0.93648 1.03267 1.21230 0.93751 0.98419 1.05791 1.23945 1.01153 0.91266 0.94710 1.86470 0.90276 1.07566 1.88540 1.23806 0.99191 0.97479 1.08325 1.19503 0.87760 0.84266 0.78278 1.90711 1.60466 1.39362 1.50125 1.48068 1.09753 1.04005 1.70803 1.21710 0.93894 0.90031 1.00739 1.19349 0.72333 0.97963 0.97671 1.21382 0.92893 1.50196 0.92184 0.92461 1.24934 0.96562 0.95080 0.97512 1.69923 1.03140 1.49433 1.30847 0.86542 0.77542 0.78648 0.84608 1.20245 1.21158 1.20117 1.68569 1.09429 1.25041 1.18367 1.18350 0.88841 0.91823 0.94634 1.19982 0.91041 0.97212 1.08438 0.88038 0.92527 0.92526 0.84996 0.84838 0.90000 0.90379 0.90756 0.84051 0.86592 0.86453 0.93434 0.90481 0.92200 0.94716 0.93655 0.92629 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -2.90 10.48 -19.23 -0.20 -3.11 16 3 C 0.15 1.47 6.67 -39.21 -0.26 1.21 16 4 C -0.20 -1.58 8.94 -39.77 -0.36 -1.94 16 5 C -0.05 -0.39 9.29 -39.56 -0.37 -0.76 16 6 C -0.14 -1.56 5.75 -106.74 -0.61 -2.17 16 7 C 0.00 -0.01 5.91 -104.31 -0.62 -0.63 16 8 C -0.12 -0.69 9.58 36.00 0.34 -0.34 16 9 C -0.17 -1.90 9.42 -39.55 -0.37 -2.28 16 10 C 0.15 2.11 6.98 -16.80 -0.12 2.00 16 11 S 0.03 0.47 21.18 -107.50 -2.28 -1.80 16 12 C -0.14 -2.25 3.85 36.01 0.14 -2.12 16 13 C 0.52 11.12 7.69 -10.98 -0.08 11.04 16 14 O -0.53 -13.52 15.44 5.56 0.09 -13.44 16 15 N -0.59 -12.93 2.86 -182.96 -0.52 -13.45 16 16 C 0.08 1.32 10.24 59.84 0.61 1.93 16 17 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 18 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 22 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 N -0.50 -7.19 9.05 -9.82 -0.09 -7.28 16 27 C 0.19 2.46 6.60 -84.87 -0.56 1.90 16 28 C -0.15 -1.75 9.94 -38.98 -0.39 -2.14 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.21 7.64 -51.93 -0.40 -0.19 16 31 H 0.06 0.21 7.64 -51.93 -0.40 -0.19 16 32 H 0.13 0.65 6.23 -52.49 -0.33 0.33 16 33 H 0.13 0.67 6.41 -52.48 -0.34 0.33 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 36 H 0.07 0.32 6.50 -51.92 -0.34 -0.02 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.73 8.08 -51.92 -0.42 1.31 16 39 H 0.12 1.83 7.37 -51.92 -0.38 1.45 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 42 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 43 H 0.03 0.92 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -35.59 398.43 -9.62 -45.20 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.23 Total: -2.68 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.10 Total: -0.50 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.12 Total: -46.81 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.12 Total: -16.54 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.28 Total: -1.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.59 -9.62 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012532038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.574 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds