Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35837 * 117.00068 * 2 1 4 4 C 1.39822 * 119.62100 * 0.02562 * 3 2 1 5 5 C 1.36050 * 120.79244 * 180.02562 * 4 3 2 6 6 C 1.40381 * 119.86785 * 359.97438 * 5 4 3 7 7 C 1.40998 * 121.12929 * 180.02562 * 6 5 4 8 8 C 1.50694 * 120.83049 * 359.97438 * 7 6 5 9 9 C 1.36221 * 118.33834 * 179.63012 * 7 6 5 10 10 C 1.40251 * 119.89802 * 0.59312 * 9 7 6 11 11 S 1.76193 * 119.24794 * 179.70726 * 10 9 7 12 12 C 1.81002 * 100.00049 * 179.73009 * 11 10 9 13 13 C 1.50701 * 109.47156 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 15 13 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47235 * 59.99855 * 22 20 18 24 24 H 1.48500 * 109.47168 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47142 * 299.99797 * 22 20 18 26 26 N 1.31825 * 121.50097 * 359.43443 * 10 9 7 27 27 C 1.33841 * 121.23340 * 0.25151 * 26 10 9 28 28 C 1.37637 * 119.62668 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47697 * 300.00340 * 1 2 3 31 31 H 1.08995 * 109.47229 * 60.01014 * 1 2 3 32 32 H 1.07997 * 119.60514 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.06761 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47263 * 89.99976 * 8 7 6 35 35 H 1.08996 * 109.47313 * 210.00094 * 8 7 6 36 36 H 1.09008 * 109.46705 * 329.99937 * 8 7 6 37 37 H 1.07999 * 120.05100 * 180.27943 * 9 7 6 38 38 H 1.09002 * 109.47115 * 60.00094 * 12 11 10 39 39 H 1.09001 * 109.46925 * 300.00251 * 12 11 10 40 40 H 1.08995 * 109.47620 * 89.99771 * 16 15 13 41 41 H 1.09006 * 109.47028 * 209.99878 * 16 15 13 42 42 H 1.09002 * 109.47109 * 329.99455 * 16 15 13 43 43 H 1.09000 * 109.47018 * 209.99971 * 17 15 13 44 44 H 1.09000 * 109.47828 * 330.00266 * 17 15 13 45 45 H 0.97001 * 119.99961 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.19297 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2764 2.3779 0.0005 5 6 1.8692 3.6025 0.0000 6 6 3.2695 3.7014 -0.0005 7 6 3.9116 4.9566 -0.0005 8 6 3.1113 6.2335 -0.0005 9 6 5.2735 4.9863 0.0067 10 6 5.9989 3.7860 0.0013 11 16 7.7599 3.8444 0.0029 12 6 8.1331 2.0733 0.0027 13 6 9.6270 1.8747 0.0047 14 8 10.3665 2.8360 0.0065 15 7 10.1412 0.6289 0.0054 16 6 9.2479 -0.5322 0.0038 17 6 11.5934 0.4359 0.0079 18 6 12.0889 0.3695 1.4296 19 1 11.3919 0.4622 2.2492 20 6 13.4322 0.1904 1.6838 21 7 14.2809 0.0770 0.6856 22 14 14.0463 0.1074 3.4460 23 1 13.3942 -1.0295 4.1444 24 1 15.5182 -0.0894 3.4485 25 1 13.7145 1.3743 4.1460 26 7 5.3933 2.6151 0.0003 27 6 4.0579 2.5245 -0.0005 28 6 3.4206 1.2734 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8900 32 1 0.1988 2.3068 0.0014 33 1 1.2636 4.4968 0.0009 34 1 2.9183 6.5414 1.0272 35 1 3.6724 7.0140 -0.5143 36 1 2.1642 6.0686 -0.5144 37 1 5.7938 5.9327 0.0115 38 1 7.7061 1.6120 -0.8878 39 1 7.7044 1.6116 0.8922 40 1 9.0281 -0.8201 -1.0242 41 1 9.7310 -1.3629 0.5184 42 1 8.3202 -0.2776 0.5162 43 1 11.8372 -0.4941 -0.5056 44 1 12.0718 1.2703 -0.5050 45 1 15.2259 -0.0494 0.8644 46 1 4.0060 0.3657 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012532038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = -37.974965 kcal Electronic energy + Delta-G solvation = -28344.989037 eV Core-core repulsion = 24325.470513 eV Total energy + Delta-G solvation = -4019.518524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96960 -40.68890 -40.24691 -37.01654 -36.70984 -35.64012 -34.79723 -31.89777 -31.49280 -31.02208 -29.29985 -28.65311 -28.05120 -27.33710 -25.26445 -24.75275 -24.11101 -22.17839 -20.52575 -19.67536 -19.00134 -18.73838 -18.21263 -17.95614 -17.63632 -16.96764 -16.79707 -16.70462 -16.59478 -16.11001 -15.64650 -15.60785 -15.22580 -14.76426 -14.72977 -14.52951 -14.34036 -14.01200 -13.91327 -13.65323 -13.61934 -13.48824 -13.28093 -13.24221 -13.16357 -13.08692 -12.83111 -12.60508 -12.48018 -12.21965 -12.05822 -11.97532 -11.76528 -11.65283 -11.04109 -10.89433 -10.66010 -10.56993 -10.07282 -9.54121 -9.01535 -8.64063 -8.24611 -6.39490 -0.69238 -0.22979 0.27915 0.94376 1.00318 1.35557 1.40161 1.47232 1.60542 1.75127 2.23611 2.25919 2.40870 2.98634 3.05036 3.40591 3.50731 3.64591 3.72093 3.86346 3.92234 3.95897 3.98024 4.21750 4.30419 4.37689 4.39544 4.43606 4.52384 4.54866 4.64343 4.76147 4.80359 4.82759 4.88411 4.94336 4.98463 4.99850 5.13766 5.17694 5.21066 5.36741 5.41519 5.49471 5.66677 5.75859 6.01844 6.35726 6.54981 6.68846 6.69118 7.16619 7.33629 8.82645 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002154 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.133302 B =12997.074964 C =14365.410386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.154 3.846 4 C -0.196 4.196 5 C -0.038 4.038 6 C -0.158 4.158 7 C 0.013 3.987 8 C -0.119 4.119 9 C -0.187 4.187 10 C 0.143 3.857 11 S -0.010 6.010 12 C -0.113 4.113 13 C 0.511 3.489 14 O -0.578 6.578 15 N -0.601 5.601 16 C 0.076 3.924 17 C 0.260 3.740 18 C -0.546 4.546 19 H 0.052 0.948 20 C 0.008 3.992 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.278 1.278 26 N -0.523 5.523 27 C 0.163 3.837 28 C -0.181 4.181 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.029 0.971 44 H 0.002 0.998 45 H 0.268 0.732 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.859 6.750 -2.250 37.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.106 3.894 4 C -0.214 4.214 5 C -0.056 4.056 6 C -0.162 4.162 7 C 0.004 3.996 8 C -0.175 4.175 9 C -0.212 4.212 10 C -0.118 4.118 11 S 0.230 5.770 12 C -0.264 4.264 13 C 0.297 3.703 14 O -0.459 6.459 15 N -0.332 5.332 16 C -0.066 4.066 17 C 0.139 3.861 18 C -0.584 4.584 19 H 0.071 0.929 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.792 3.208 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.203 1.203 26 N -0.239 5.239 27 C 0.039 3.961 28 C -0.202 4.202 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.187 0.813 33 H 0.192 0.808 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.173 0.827 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.020 0.980 45 H 0.077 0.923 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -34.884 7.051 -2.306 35.664 hybrid contribution -0.152 -0.794 0.667 1.048 sum -35.037 6.257 -1.639 35.629 Atomic orbital electron populations 1.23456 0.75732 1.05880 1.02892 1.86089 1.24104 1.26606 1.87962 1.19005 0.91418 0.85431 0.93553 1.21421 1.01992 0.91163 1.06859 1.21229 0.91809 0.99181 0.93424 1.18897 0.95886 0.93124 1.08260 1.20470 0.93090 0.95878 0.90207 1.21045 1.00198 0.91525 1.04709 1.21414 0.94708 0.97940 1.07091 1.23734 0.99406 0.92387 0.96319 1.86498 0.93428 1.06962 1.90066 1.23510 0.94924 0.98557 1.09434 1.20258 0.89723 0.83374 0.76916 1.90675 1.62232 1.40904 1.52125 1.48074 1.08617 1.05937 1.70592 1.21981 0.93761 0.87978 1.02856 1.18844 0.75282 0.95680 0.96324 1.21639 0.93410 1.50517 0.92855 0.92947 1.25862 0.96694 0.94412 1.02131 1.70041 1.03551 1.49881 1.33126 0.85458 0.77412 0.78861 0.79034 1.18502 1.20100 1.20339 1.68410 1.10737 1.25550 1.19229 1.18620 0.88568 0.93199 0.95750 1.19983 0.92304 0.96586 1.11329 0.86573 0.90947 0.90884 0.81304 0.80792 0.88367 0.89384 0.88466 0.82739 0.84986 0.85474 0.90813 0.90795 0.89449 0.95274 0.97994 0.92283 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.80 113.37 1.11 1.20 16 2 O -0.33 -5.60 10.48 -91.71 -0.96 -6.56 16 3 C 0.15 2.82 6.67 22.51 0.15 2.97 16 4 C -0.20 -2.30 8.94 22.14 0.20 -2.10 16 5 C -0.04 -0.45 9.29 22.28 0.21 -0.25 16 6 C -0.16 -3.07 5.75 -21.24 -0.12 -3.19 16 7 C 0.01 0.22 5.91 -19.66 -0.12 0.11 16 8 C -0.12 -0.86 9.58 71.23 0.68 -0.18 16 9 C -0.19 -4.14 9.42 22.29 0.21 -3.93 16 10 C 0.14 4.10 6.98 85.18 0.59 4.69 16 11 S -0.01 -0.34 21.18 -56.49 -1.20 -1.54 16 12 C -0.11 -3.87 3.85 71.24 0.27 -3.60 16 13 C 0.51 23.00 7.69 87.66 0.67 23.68 16 14 O -0.58 -31.46 15.44 -3.03 -0.05 -31.51 16 15 N -0.60 -27.14 2.86 -851.14 -2.43 -29.57 16 16 C 0.08 2.50 10.24 127.77 1.31 3.81 16 17 C 0.26 14.51 5.16 85.64 0.44 14.95 16 18 C -0.55 -32.40 9.39 25.60 0.24 -32.16 16 19 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 22 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 26 N -0.52 -15.48 9.05 -184.98 -1.67 -17.16 16 27 C 0.16 4.23 6.60 40.21 0.27 4.50 16 28 C -0.18 -4.38 9.94 22.66 0.23 -4.15 16 29 H 0.12 0.38 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.24 7.64 -2.39 -0.02 0.23 16 31 H 0.07 0.24 7.64 -2.39 -0.02 0.22 16 32 H 0.17 0.71 6.23 -2.91 -0.02 0.69 16 33 H 0.17 0.63 6.41 -2.91 -0.02 0.61 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.53 8.10 -2.39 -0.02 0.51 16 36 H 0.10 0.29 6.50 -2.38 -0.02 0.27 16 37 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.13 4.03 8.08 -2.39 -0.02 4.01 16 39 H 0.13 4.06 7.37 -2.39 -0.02 4.04 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16 42 H 0.09 2.37 6.44 -2.39 -0.02 2.35 16 43 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 44 H 0.00 0.12 7.42 -2.39 -0.02 0.11 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -83.15 398.43 3.81 -79.33 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.01 Total: 8.45 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.81 Total: 7.30 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -3.82 Total: -103.48 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.01 Total: -38.07 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -1.20 Total: -1.54 kcal Total: -83.15 3.81 -79.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012532038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.359 kcal (2) G-P(sol) polarization free energy of solvation -83.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds