Wall clock time and date at job start Tue Mar 31 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47198 * 270.00030 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99849 * 3 2 1 6 6 H 1.48499 * 109.47330 * 150.00081 * 3 2 1 7 7 C 1.37874 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00448 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46941 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.46825 * 179.97438 * 10 9 7 12 12 C 1.76192 * 103.00039 * 179.97438 * 11 10 9 13 13 N 1.31094 * 126.02480 * 0.02722 * 12 11 10 14 14 N 1.40080 * 108.05863 * 179.97438 * 13 12 11 15 15 C 1.31030 * 108.07214 * 359.97438 * 14 13 12 16 16 N 1.38904 * 126.00033 * 180.02562 * 15 14 13 17 17 C 1.47020 * 110.99544 * 300.77568 * 16 15 14 18 18 C 1.53110 * 109.25199 * 182.35192 * 17 16 15 19 19 O 1.43014 * 109.29089 * 303.21620 * 18 17 16 20 20 C 1.43012 * 113.73820 * 58.65307 * 19 18 17 21 21 C 1.47007 * 110.99960 * 64.45647 * 16 15 14 22 22 N 1.36840 * 107.99690 * 0.26560 * 15 14 13 23 23 C 1.40255 * 126.04255 * 179.73621 * 22 15 14 24 24 C 1.38808 * 120.06422 * 293.04334 * 23 22 15 25 25 C 1.38128 * 119.93789 * 179.76892 * 24 23 22 26 26 C 1.38279 * 120.06068 * 0.53014 * 25 24 23 27 27 C 1.38269 * 120.12901 * 359.70069 * 26 25 24 28 28 C 1.38130 * 120.06234 * 0.04689 * 27 26 25 29 29 H 0.97000 * 119.99478 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46745 * 59.99712 * 9 7 2 31 31 H 1.08998 * 109.47109 * 299.99826 * 9 7 2 32 32 H 1.08993 * 109.47172 * 60.00481 * 10 9 7 33 33 H 1.08998 * 109.47191 * 299.99915 * 10 9 7 34 34 H 1.08999 * 109.47402 * 62.44335 * 17 16 15 35 35 H 1.08996 * 109.54895 * 302.30207 * 17 16 15 36 36 H 1.09001 * 109.50604 * 183.26125 * 18 17 16 37 37 H 1.08997 * 109.50665 * 63.17871 * 18 17 16 38 38 H 1.09006 * 109.50874 * 61.25847 * 20 19 18 39 39 H 1.09000 * 109.50625 * 181.34656 * 20 19 18 40 40 H 1.09003 * 109.50774 * 57.67612 * 21 16 15 41 41 H 1.08996 * 109.54615 * 297.56218 * 21 16 15 42 42 H 1.08006 * 120.03438 * 0.02562 * 24 23 22 43 43 H 1.07998 * 119.97197 * 180.26147 * 25 24 23 44 44 H 1.07997 * 119.93273 * 179.72358 * 26 25 24 45 45 H 1.08003 * 119.96887 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.02918 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 16 5.8355 -2.6367 -0.0001 12 6 6.2318 -4.3535 0.0005 13 7 5.3722 -5.3432 0.0004 14 7 6.0929 -6.5444 0.0004 15 6 7.3702 -6.2520 0.0000 16 7 8.4168 -7.1652 -0.0006 17 6 8.3524 -8.0410 1.1785 18 6 9.5538 -8.9902 1.1685 19 8 9.5620 -9.7291 -0.0560 20 6 9.6253 -8.9066 -1.2242 21 6 8.4242 -7.9572 -1.2391 22 7 7.4919 -4.8890 0.0057 23 6 8.6949 -4.1680 0.0124 24 6 9.5295 -4.2181 1.1205 25 6 10.7159 -3.5108 1.1224 26 6 11.0673 -2.7445 0.0263 27 6 10.2356 -2.6888 -1.0769 28 6 9.0505 -3.3982 -1.0866 29 1 -0.4849 0.8401 -0.0004 30 1 3.8746 -0.6808 0.8906 31 1 3.8753 -0.6798 -0.8895 32 1 3.6586 -3.1502 -0.8903 33 1 3.6578 -3.1507 0.8896 34 1 7.4300 -8.6211 1.1504 35 1 8.3748 -7.4353 2.0844 36 1 9.4796 -9.6800 2.0093 37 1 10.4745 -8.4129 1.2515 38 1 10.5479 -8.3261 -1.2112 39 1 9.6037 -9.5358 -2.1140 40 1 8.4986 -7.2897 -2.0976 41 1 7.5034 -8.5364 -1.3071 42 1 9.2535 -4.8129 1.9787 43 1 11.3677 -3.5527 1.9825 44 1 11.9933 -2.1887 0.0318 45 1 10.5128 -2.0898 -1.9318 46 1 8.4011 -3.3540 -1.9484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012534716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:36 Heat of formation + Delta-G solvation = 80.946332 kcal Electronic energy + Delta-G solvation = -29371.166063 eV Core-core repulsion = 25389.097104 eV Total energy + Delta-G solvation = -3982.068959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.35220 -39.89965 -39.25674 -36.17720 -34.42308 -33.79833 -31.72694 -31.37127 -31.34532 -30.59068 -29.65124 -27.36226 -25.61328 -24.54297 -23.59693 -23.32125 -22.54929 -21.78261 -20.79453 -20.31134 -18.83475 -17.26493 -17.05267 -16.83963 -16.70706 -16.37201 -16.24401 -15.52163 -15.46080 -15.08073 -14.66637 -14.58954 -14.55283 -14.37776 -13.97967 -13.82422 -13.53056 -13.14032 -12.93510 -12.81450 -12.24897 -12.10750 -11.92858 -11.85684 -11.68066 -11.61994 -11.31320 -11.29577 -11.06515 -10.52197 -10.42163 -10.34197 -10.26571 -10.23482 -10.02675 -9.75962 -9.36956 -9.30840 -9.28216 -9.06623 -8.64327 -7.59479 -6.13798 -4.14915 0.73563 0.99484 1.06143 1.61573 2.12361 2.24983 2.59162 3.22529 3.25288 3.32976 3.33198 3.35439 3.41054 4.30683 4.35282 4.36199 4.51274 4.55658 4.66791 4.70540 4.71442 4.72735 4.81132 4.99814 5.01712 5.08087 5.11790 5.15702 5.18710 5.30332 5.35804 5.38704 5.54204 5.59720 5.68982 5.80482 5.89571 5.92972 6.06265 6.10627 6.12115 6.14307 6.42509 6.49190 6.64297 6.96095 7.03747 7.07963 7.57802 7.85818 8.39186 8.89295 9.45004 10.98776 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002623 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.926087 B =10673.945183 C =12237.817530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.004 3.996 10 C -0.067 4.067 11 S -0.030 6.030 12 C 0.228 3.772 13 N -0.307 5.307 14 N -0.323 5.323 15 C 0.390 3.610 16 N -0.461 5.461 17 C 0.027 3.973 18 C 0.068 3.932 19 O -0.381 6.381 20 C 0.068 3.932 21 C 0.028 3.972 22 N -0.434 5.434 23 C 0.121 3.879 24 C -0.090 4.090 25 C -0.110 4.110 26 C -0.107 4.107 27 C -0.106 4.106 28 C -0.098 4.098 29 H 0.266 0.734 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.829 -12.526 -0.040 31.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.096 0.904 9 C -0.036 4.036 10 C -0.216 4.216 11 S 0.200 5.800 12 C -0.151 4.151 13 N -0.142 5.142 14 N -0.157 5.157 15 C 0.027 3.973 16 N -0.188 5.188 17 C -0.100 4.100 18 C -0.010 4.010 19 O -0.299 6.299 20 C -0.009 4.009 21 C -0.100 4.100 22 N -0.133 5.133 23 C 0.030 3.970 24 C -0.109 4.109 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.117 4.117 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 28.335 -12.379 -0.019 30.921 hybrid contribution -0.089 0.445 -0.026 0.454 sum 28.246 -11.935 -0.045 30.664 Atomic orbital electron populations 1.69896 1.06240 1.27163 1.50060 1.24952 0.94754 0.99066 0.94238 0.86813 0.80454 0.83580 0.78756 1.20009 1.21083 1.18828 1.20874 0.87860 0.95049 1.52176 0.90405 1.19424 0.97812 0.88689 0.97692 1.23902 0.86035 1.05040 1.06582 1.85679 1.13975 0.88779 1.91553 1.26918 0.82776 1.02786 1.02608 1.78384 1.20743 0.92679 1.22436 1.78076 1.00188 1.16978 1.20438 1.22161 0.90663 0.82584 1.01905 1.58937 1.38357 1.16623 1.04919 1.22914 1.00362 0.94858 0.91873 1.22696 0.96525 0.94190 0.87548 1.88021 1.94754 1.33153 1.13974 1.22692 0.96447 0.92819 0.88962 1.22905 1.00388 0.96065 0.90615 1.43718 1.04892 1.04577 1.60070 1.17550 0.86153 0.97467 0.95788 1.21044 0.94363 0.99056 0.96455 1.21032 0.96019 0.96873 0.98892 1.21295 0.99705 0.98187 0.93342 1.21055 0.93586 0.98892 0.98972 1.21191 0.97149 0.96327 0.97045 0.92423 0.95351 0.95788 0.89051 0.89033 0.91536 0.89343 0.87593 0.91911 0.91905 0.87594 0.89329 0.91650 0.85810 0.85123 0.85324 0.84946 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C 0.00 0.09 4.05 -27.88 -0.11 -0.02 16 10 C -0.07 -1.37 5.52 37.16 0.21 -1.16 16 11 S -0.03 -0.51 21.67 -107.50 -2.33 -2.84 16 12 C 0.23 3.96 8.04 -88.14 -0.71 3.25 16 13 N -0.31 -6.00 12.28 30.72 0.38 -5.62 16 14 N -0.32 -5.73 12.63 30.43 0.38 -5.35 16 15 C 0.39 5.67 6.37 -318.10 -2.03 3.64 16 16 N -0.46 -5.09 4.67 -174.02 -0.81 -5.91 16 17 C 0.03 0.26 5.55 -3.70 -0.02 0.24 16 18 C 0.07 0.49 7.01 37.21 0.26 0.75 16 19 O -0.38 -3.42 10.83 -35.23 -0.38 -3.81 16 20 C 0.07 0.50 7.01 37.21 0.26 0.76 16 21 C 0.03 0.27 5.58 -3.71 -0.02 0.25 16 22 N -0.43 -6.38 2.81 -61.22 -0.17 -6.56 16 23 C 0.12 1.47 5.31 -83.58 -0.44 1.03 16 24 C -0.09 -0.91 9.93 -39.41 -0.39 -1.30 16 25 C -0.11 -0.86 10.04 -39.61 -0.40 -1.25 16 26 C -0.11 -0.78 10.04 -39.55 -0.40 -1.18 16 27 C -0.11 -0.88 10.04 -39.61 -0.40 -1.28 16 28 C -0.10 -1.06 9.83 -39.41 -0.39 -1.44 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 31 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 32 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 34 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 46 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -33.38 399.28 -12.52 -45.89 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.69 Total: -1.29 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -5.01 Total: -10.56 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.55 Total: -49.77 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.38 Total: -3.81 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.33 Total: -2.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.38 -12.52 -45.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012534716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.841 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds