Wall clock time and date at job start Tue Mar 31 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47198 * 270.00030 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99849 * 3 2 1 6 6 H 1.48499 * 109.47330 * 150.00081 * 3 2 1 7 7 C 1.37874 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00448 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46941 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.46825 * 179.97438 * 10 9 7 12 12 C 1.76192 * 103.00039 * 179.97438 * 11 10 9 13 13 N 1.31094 * 126.02480 * 0.02722 * 12 11 10 14 14 N 1.40080 * 108.05863 * 179.97438 * 13 12 11 15 15 C 1.31030 * 108.07214 * 359.97438 * 14 13 12 16 16 N 1.38904 * 126.00033 * 180.02562 * 15 14 13 17 17 C 1.47020 * 110.99544 * 300.77568 * 16 15 14 18 18 C 1.53110 * 109.25199 * 182.35192 * 17 16 15 19 19 O 1.43014 * 109.29089 * 303.21620 * 18 17 16 20 20 C 1.43012 * 113.73820 * 58.65307 * 19 18 17 21 21 C 1.47007 * 110.99960 * 64.45647 * 16 15 14 22 22 N 1.36840 * 107.99690 * 0.26560 * 15 14 13 23 23 C 1.40255 * 126.04255 * 179.73621 * 22 15 14 24 24 C 1.38808 * 120.06422 * 293.04334 * 23 22 15 25 25 C 1.38128 * 119.93789 * 179.76892 * 24 23 22 26 26 C 1.38279 * 120.06068 * 0.53014 * 25 24 23 27 27 C 1.38269 * 120.12901 * 359.70069 * 26 25 24 28 28 C 1.38130 * 120.06234 * 0.04689 * 27 26 25 29 29 H 0.97000 * 119.99478 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46745 * 59.99712 * 9 7 2 31 31 H 1.08998 * 109.47109 * 299.99826 * 9 7 2 32 32 H 1.08993 * 109.47172 * 60.00481 * 10 9 7 33 33 H 1.08998 * 109.47191 * 299.99915 * 10 9 7 34 34 H 1.08999 * 109.47402 * 62.44335 * 17 16 15 35 35 H 1.08996 * 109.54895 * 302.30207 * 17 16 15 36 36 H 1.09001 * 109.50604 * 183.26125 * 18 17 16 37 37 H 1.08997 * 109.50665 * 63.17871 * 18 17 16 38 38 H 1.09006 * 109.50874 * 61.25847 * 20 19 18 39 39 H 1.09000 * 109.50625 * 181.34656 * 20 19 18 40 40 H 1.09003 * 109.50774 * 57.67612 * 21 16 15 41 41 H 1.08996 * 109.54615 * 297.56218 * 21 16 15 42 42 H 1.08006 * 120.03438 * 0.02562 * 24 23 22 43 43 H 1.07998 * 119.97197 * 180.26147 * 25 24 23 44 44 H 1.07997 * 119.93273 * 179.72358 * 26 25 24 45 45 H 1.08003 * 119.96887 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.02918 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 16 5.8355 -2.6367 -0.0001 12 6 6.2318 -4.3535 0.0005 13 7 5.3722 -5.3432 0.0004 14 7 6.0929 -6.5444 0.0004 15 6 7.3702 -6.2520 0.0000 16 7 8.4168 -7.1652 -0.0006 17 6 8.3524 -8.0410 1.1785 18 6 9.5538 -8.9902 1.1685 19 8 9.5620 -9.7291 -0.0560 20 6 9.6253 -8.9066 -1.2242 21 6 8.4242 -7.9572 -1.2391 22 7 7.4919 -4.8890 0.0057 23 6 8.6949 -4.1680 0.0124 24 6 9.5295 -4.2181 1.1205 25 6 10.7159 -3.5108 1.1224 26 6 11.0673 -2.7445 0.0263 27 6 10.2356 -2.6888 -1.0769 28 6 9.0505 -3.3982 -1.0866 29 1 -0.4849 0.8401 -0.0004 30 1 3.8746 -0.6808 0.8906 31 1 3.8753 -0.6798 -0.8895 32 1 3.6586 -3.1502 -0.8903 33 1 3.6578 -3.1507 0.8896 34 1 7.4300 -8.6211 1.1504 35 1 8.3748 -7.4353 2.0844 36 1 9.4796 -9.6800 2.0093 37 1 10.4745 -8.4129 1.2515 38 1 10.5479 -8.3261 -1.2112 39 1 9.6037 -9.5358 -2.1140 40 1 8.4986 -7.2897 -2.0976 41 1 7.5034 -8.5364 -1.3071 42 1 9.2535 -4.8129 1.9787 43 1 11.3677 -3.5527 1.9825 44 1 11.9933 -2.1887 0.0318 45 1 10.5128 -2.0898 -1.9318 46 1 8.4011 -3.3540 -1.9484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012534716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:35 Heat of formation + Delta-G solvation = 62.301039 kcal Electronic energy + Delta-G solvation = -29371.974583 eV Core-core repulsion = 25389.097104 eV Total energy + Delta-G solvation = -3982.877479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.51762 -40.64768 -40.01801 -37.01062 -35.86470 -35.39565 -33.37555 -32.41247 -32.06794 -31.74824 -30.50144 -28.27626 -27.56658 -25.24280 -24.64625 -24.18824 -23.47816 -23.09618 -22.17822 -21.27542 -19.77074 -19.17769 -18.13634 -17.83471 -17.73862 -17.21460 -17.03051 -16.46217 -16.25335 -16.20570 -15.89171 -15.83600 -15.51464 -15.38994 -15.27667 -14.97563 -14.81136 -14.47687 -13.92631 -13.78767 -13.60691 -13.16471 -13.06733 -12.87032 -12.84102 -12.49263 -12.39440 -12.37246 -12.26239 -12.17405 -11.95828 -11.78177 -11.71150 -11.46753 -11.32931 -11.30646 -10.96168 -10.80900 -10.20715 -10.00871 -9.85933 -8.98481 -8.32678 -6.40500 -0.32469 -0.05320 0.33282 0.48290 0.92128 0.94719 1.14236 1.37801 1.39774 1.51376 2.31813 2.34579 2.63900 2.80818 3.01826 3.31968 3.66066 3.78482 3.85368 3.87566 3.89816 3.91936 4.05560 4.08870 4.12681 4.15512 4.19549 4.26308 4.35989 4.41351 4.49352 4.53563 4.57859 4.64239 4.68567 4.79157 4.86499 4.98014 5.10039 5.14138 5.21120 5.29363 5.34263 5.38190 5.47865 5.49766 5.78037 6.04314 6.05733 6.18437 6.59112 6.65780 7.23534 8.83762 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002623 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.926087 B =10673.945183 C =12237.817530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.240 1.240 7 C -0.534 4.534 8 H 0.033 0.967 9 C 0.011 3.989 10 C -0.070 4.070 11 S 0.024 5.976 12 C 0.215 3.785 13 N -0.351 5.351 14 N -0.362 5.362 15 C 0.406 3.594 16 N -0.452 5.452 17 C 0.026 3.974 18 C 0.074 3.926 19 O -0.396 6.396 20 C 0.075 3.925 21 C 0.026 3.974 22 N -0.425 5.425 23 C 0.086 3.914 24 C -0.098 4.098 25 C -0.103 4.103 26 C -0.096 4.096 27 C -0.104 4.104 28 C -0.113 4.113 29 H 0.270 0.730 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.121 0.879 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.157 0.843 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.147 -11.146 0.216 35.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.164 1.164 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.029 4.029 10 C -0.220 4.220 11 S 0.253 5.747 12 C -0.165 4.165 13 N -0.186 5.186 14 N -0.196 5.196 15 C 0.042 3.958 16 N -0.179 5.179 17 C -0.101 4.101 18 C -0.003 4.003 19 O -0.315 6.315 20 C -0.002 4.002 21 C -0.101 4.101 22 N -0.123 5.123 23 C -0.004 4.004 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.122 4.122 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.139 0.861 43 H 0.178 0.822 44 H 0.181 0.819 45 H 0.174 0.826 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 33.689 -11.017 0.237 35.445 hybrid contribution -1.618 -0.112 -0.106 1.626 sum 32.071 -11.129 0.131 33.947 Atomic orbital electron populations 1.70060 1.08410 1.28521 1.51623 1.25988 0.95650 1.03576 0.93571 0.85661 0.79711 0.77783 0.79634 1.18650 1.20726 1.16356 1.21166 0.90679 0.93585 1.51953 0.94881 1.19243 0.94697 0.90468 0.98443 1.23535 0.89815 1.03218 1.05385 1.85202 1.09286 0.88443 1.91766 1.26906 0.84023 1.02595 1.03012 1.78272 1.22591 0.93846 1.23881 1.77996 1.01843 1.16722 1.23002 1.22581 0.90630 0.83346 0.99231 1.59260 1.36065 1.16564 1.06040 1.23029 1.00826 0.94863 0.91406 1.22815 0.95706 0.94098 0.87684 1.88008 1.94673 1.34024 1.14751 1.22787 0.95486 0.92562 0.89354 1.23005 1.00896 0.96133 0.90052 1.43774 1.05020 1.04625 1.58831 1.17898 0.85779 0.99171 0.97557 1.21160 0.95113 0.99758 0.95746 1.21407 0.95087 0.95536 1.00066 1.21742 1.00336 0.97083 0.92192 1.21382 0.92451 0.98137 1.00264 1.21248 0.98386 0.97221 0.96446 0.92151 0.94401 0.94432 0.90353 0.90445 0.93711 0.88914 0.85556 0.90237 0.90400 0.85620 0.89297 0.93721 0.86061 0.82153 0.81852 0.82579 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 2 C 0.01 0.58 5.47 84.65 0.46 1.05 16 3 Si 0.95 42.90 27.47 68.60 1.88 44.78 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.24 -9.89 6.54 99.48 0.65 -9.23 16 7 C -0.53 -30.92 9.66 25.60 0.25 -30.67 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 9 C 0.01 0.52 4.05 29.85 0.12 0.64 16 10 C -0.07 -2.97 5.52 71.98 0.40 -2.57 16 11 S 0.02 0.81 21.67 -56.49 -1.22 -0.41 16 12 C 0.21 7.69 8.04 179.48 1.44 9.13 16 13 N -0.35 -14.48 12.28 -56.72 -0.70 -15.17 16 14 N -0.36 -13.57 12.63 -57.65 -0.73 -14.30 16 15 C 0.41 12.11 6.37 259.84 1.66 13.77 16 16 N -0.45 -9.86 4.67 -704.48 -3.29 -13.15 16 17 C 0.03 0.48 5.55 86.32 0.48 0.96 16 18 C 0.07 0.92 7.01 72.02 0.50 1.42 16 19 O -0.40 -6.38 10.83 -148.98 -1.61 -8.00 16 20 C 0.08 0.97 7.01 72.02 0.50 1.48 16 21 C 0.03 0.51 5.58 86.32 0.48 0.99 16 22 N -0.43 -12.65 2.81 -347.60 -0.98 -13.62 16 23 C 0.09 1.99 5.31 38.07 0.20 2.19 16 24 C -0.10 -1.78 9.93 22.38 0.22 -1.56 16 25 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 26 C -0.10 -0.94 10.04 22.29 0.22 -0.71 16 27 C -0.10 -1.36 10.04 22.25 0.22 -1.14 16 28 C -0.11 -2.27 9.83 22.38 0.22 -2.05 16 29 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.04 1.69 7.20 -2.38 -0.02 1.67 16 31 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 32 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 45 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 46 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -77.27 399.28 2.19 -75.08 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.92 Total: 11.82 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 7.61 Total: -8.04 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -5.39 Total: -115.23 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -1.61 Total: -8.00 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -1.22 Total: -0.41 kcal Total: -77.27 2.19 -75.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012534716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.379 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds