Wall clock time and date at job start Tue Mar 31 2020 07:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38326 * 119.90962 * 2 1 4 4 C 1.38143 * 120.09468 * 180.02562 * 3 2 1 5 5 Br 1.89105 * 120.04593 * 180.02562 * 4 3 2 6 6 C 1.39101 * 119.91018 * 359.97438 * 4 3 2 7 7 N 1.39553 * 120.09582 * 180.02562 * 6 4 3 8 8 C 1.34779 * 119.99740 * 91.09305 * 7 6 4 9 9 O 1.21755 * 120.00171 * 355.26125 * 8 7 6 10 10 C 1.46141 * 120.00045 * 175.26155 * 8 7 6 11 11 H 1.07996 * 120.00263 * 359.97438 * 10 8 7 12 12 C 1.40131 * 119.99688 * 180.02562 * 10 8 7 13 13 N 1.30631 * 120.00399 * 359.97438 * 12 10 8 14 14 Si 1.86808 * 119.99432 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47019 * 89.99917 * 14 12 10 16 16 H 1.48503 * 109.46709 * 209.99454 * 14 12 10 17 17 H 1.48494 * 109.47290 * 329.99574 * 14 12 10 18 18 C 1.39111 * 119.81354 * 0.27708 * 6 4 3 19 19 Br 1.89100 * 120.04681 * 179.70165 * 18 6 4 20 20 C 1.38154 * 119.90249 * 359.45163 * 18 6 4 21 21 H 1.09003 * 109.47163 * 90.00032 * 1 2 3 22 22 H 1.09009 * 109.46968 * 209.99805 * 1 2 3 23 23 H 1.08996 * 109.46778 * 329.99587 * 1 2 3 24 24 H 1.08003 * 119.95003 * 0.02562 * 3 2 1 25 25 H 0.96996 * 120.00094 * 271.36495 * 7 6 4 26 26 H 0.96993 * 120.00027 * 180.02562 * 13 12 10 27 27 H 1.07995 * 119.95137 * 180.24998 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1990 0.0000 4 6 3.5782 1.2035 -0.0005 5 35 4.5197 2.8435 0.0002 6 6 4.2757 0.0000 -0.0005 7 7 5.6712 0.0000 -0.0005 8 6 6.3451 -0.0223 1.1665 9 8 5.7394 0.0447 2.2206 10 6 7.8027 -0.1269 1.1668 11 1 8.3400 -0.1867 0.2318 12 6 8.5032 -0.1506 2.3802 13 7 7.8534 -0.0787 3.5111 14 14 10.3664 -0.2850 2.3804 15 1 10.9608 1.0755 2.3496 16 1 10.8115 -0.9919 3.6083 17 1 10.8081 -1.0454 1.1839 18 6 3.5782 -1.2036 -0.0058 19 35 4.5198 -2.8435 -0.0144 20 6 2.1967 -1.1991 0.0004 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6544 2.1330 0.0004 25 1 6.1562 0.0200 -0.8403 26 1 8.3383 -0.0947 4.3510 27 1 1.6545 -2.1331 0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012650234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:38 Heat of formation + Delta-G solvation = -31.579691 kcal Electronic energy + Delta-G solvation = -16169.647383 eV Core-core repulsion = 13211.856306 eV Total energy + Delta-G solvation = -2957.791078 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 360.905 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96013 -38.93508 -35.67314 -34.47528 -33.79116 -32.75875 -30.97813 -29.94241 -28.76438 -26.80502 -23.39690 -22.93085 -21.46481 -19.47996 -18.08711 -17.42638 -17.18964 -16.08961 -15.91904 -15.18882 -14.82868 -14.59759 -14.40862 -14.23732 -13.41894 -13.16807 -13.16494 -12.78745 -12.77352 -12.59025 -12.38397 -12.23743 -12.02853 -11.26681 -11.18031 -11.10446 -10.91317 -9.92900 -9.80413 -9.69030 -9.46810 -8.27001 -6.82437 -0.07474 0.01722 0.50700 0.81463 1.40377 1.41146 1.55661 2.23143 2.36244 2.50548 2.94734 3.64407 3.73338 4.09828 4.15991 4.23649 4.30105 4.76506 4.83006 4.92339 5.07927 5.17276 5.34729 5.35805 5.63034 5.85544 6.19054 6.32885 6.89796 7.43003 8.51874 8.69909 Molecular weight = 360.91amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.006520 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.407991 B = 4293.322987 C = 6288.813909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.078 4.078 3 C -0.078 4.078 4 C -0.103 4.103 5 Br -0.043 7.043 6 C 0.190 3.810 7 N -0.713 5.713 8 C 0.567 3.433 9 O -0.611 6.611 10 C -0.565 4.565 11 H 0.084 0.916 12 C 0.036 3.964 13 N -0.813 5.813 14 Si 0.988 3.012 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.251 1.251 18 C -0.104 4.104 19 Br -0.042 7.042 20 C -0.078 4.078 21 H 0.094 0.906 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.161 0.839 25 H 0.402 0.598 26 H 0.273 0.727 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 -0.055 -10.631 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.080 4.080 3 C -0.099 4.099 4 C -0.185 4.185 5 Br 0.043 6.957 6 C 0.093 3.907 7 N -0.367 5.367 8 C 0.373 3.627 9 O -0.495 6.495 10 C -0.601 4.601 11 H 0.102 0.898 12 C -0.180 4.180 13 N -0.443 5.443 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.174 1.174 18 C -0.186 4.186 19 Br 0.044 6.956 20 C -0.099 4.099 21 H 0.113 0.887 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.179 0.821 25 H 0.239 0.761 26 H 0.083 0.917 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.115 -0.024 -9.672 15.502 hybrid contribution 0.926 -0.011 -0.100 0.931 sum -11.189 -0.035 -9.772 14.856 Atomic orbital electron populations 1.20864 0.86534 1.04507 1.04240 1.20315 0.98644 0.90681 0.98353 1.21349 0.90439 1.00444 0.97648 1.22563 0.95948 0.91111 1.08870 1.96635 1.77445 1.24097 1.97540 1.17406 0.85860 0.90729 0.96687 1.43534 1.01627 1.81606 1.09942 1.18219 0.88324 0.75310 0.80860 1.90608 1.70793 1.56034 1.32085 1.21253 0.90315 1.54122 0.94429 0.89833 1.26811 1.05551 0.91451 0.94203 1.70152 1.39087 1.36160 0.98880 0.85154 0.75721 0.79349 0.78971 1.18747 1.19883 1.17393 1.22575 0.95967 0.91115 1.08963 1.96642 1.77400 1.24068 1.97526 1.21352 0.90426 1.00448 0.97639 0.88718 0.89897 0.89903 0.82109 0.76144 0.91692 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.24 0.71 -0.78 15 2 C -0.08 -1.89 5.88 -19.82 -0.12 -2.00 15 3 C -0.08 -2.20 9.43 22.27 0.21 -1.99 15 4 C -0.10 -3.76 6.24 22.45 0.14 -3.62 15 5 Br -0.04 -1.56 33.09 -20.37 -0.67 -2.23 15 6 C 0.19 7.80 5.26 38.33 0.20 8.00 15 7 N -0.71 -32.51 3.76 -307.41 -1.16 -33.66 15 8 C 0.57 31.89 7.70 86.29 0.66 32.56 15 9 O -0.61 -39.78 15.00 -4.52 -0.07 -39.85 15 10 C -0.56 -31.70 9.53 24.78 0.24 -31.47 15 11 H 0.08 4.27 7.85 -2.91 -0.02 4.24 15 12 C 0.04 1.98 5.50 85.33 0.47 2.45 15 13 N -0.81 -49.41 11.82 21.85 0.26 -49.15 15 14 Si 0.99 41.29 29.56 68.60 2.03 43.31 15 15 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 16 H -0.27 -11.09 7.11 99.48 0.71 -10.39 15 17 H -0.25 -9.81 7.11 99.48 0.71 -9.10 15 18 C -0.10 -3.81 6.25 22.46 0.14 -3.67 15 19 Br -0.04 -1.53 33.09 -20.37 -0.67 -2.21 15 20 C -0.08 -2.20 9.43 22.27 0.21 -1.99 15 21 H 0.09 1.00 8.14 -2.39 -0.02 0.98 15 22 H 0.08 1.01 8.08 -2.38 -0.02 0.99 15 23 H 0.08 1.01 8.08 -2.39 -0.02 0.99 15 24 H 0.16 3.53 8.06 -2.91 -0.02 3.50 15 25 H 0.40 16.55 8.80 -92.71 -0.82 15.73 15 26 H 0.27 15.14 8.29 -92.71 -0.77 14.37 15 27 H 0.16 3.53 8.06 -2.91 -0.02 3.51 15 Total: -1.00 -74.28 288.25 2.99 -71.29 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.41 Total: 15.01 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 2.87 Total: -2.51 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -0.90 Total: -82.81 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.07 Total: -39.85 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 35 Polarization: -3.09 SS G_CDS: -1.35 Total: -4.44 kcal Total: -74.28 2.99 -71.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012650234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.706 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds