Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99804 * 2 1 4 4 H 1.48499 * 109.47313 * 270.00180 * 3 2 1 5 5 H 1.48502 * 109.47288 * 30.00624 * 3 2 1 6 6 H 1.48505 * 109.47063 * 150.00396 * 3 2 1 7 7 C 1.37872 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00114 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00258 * 359.97438 * 7 2 1 10 10 S 1.80997 * 109.47498 * 179.97438 * 9 7 2 11 11 C 1.76199 * 100.00138 * 179.97438 * 10 9 7 12 12 N 1.33448 * 120.99124 * 359.97438 * 11 10 9 13 13 C 1.31746 * 121.10529 * 180.02562 * 12 11 10 14 14 C 1.50697 * 118.60013 * 180.02562 * 13 12 11 15 15 C 1.53002 * 117.49380 * 8.74030 * 14 13 12 16 16 C 1.53002 * 117.49496 * 300.08273 * 14 13 12 17 17 N 1.32033 * 122.80430 * 359.96969 * 13 12 11 18 18 C 1.32560 * 120.51703 * 359.79250 * 17 13 12 19 19 C 1.40307 * 120.98935 * 180.02562 * 11 10 9 20 20 C 1.46602 * 122.69897 * 359.95376 * 19 11 10 21 21 O 1.21645 * 120.96024 * 0.02562 * 20 19 11 22 22 N 1.35204 * 118.07387 * 180.02562 * 20 19 11 23 23 H 0.97004 * 119.42380 * 179.97438 * 22 20 19 24 24 C 1.34240 * 121.15279 * 359.97438 * 22 20 19 25 25 O 1.21561 * 118.55903 * 180.02562 * 24 22 20 26 26 N 1.34475 * 122.89250 * 0.02562 * 24 22 20 27 27 C 1.46496 * 119.70002 * 180.02562 * 26 24 22 28 28 C 1.52997 * 117.50383 * 64.13880 * 27 26 24 29 29 C 1.52995 * 60.03353 * 107.50246 * 28 27 26 30 30 H 0.97002 * 120.00123 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47100 * 60.00078 * 9 7 2 32 32 H 1.08998 * 109.46921 * 300.00148 * 9 7 2 33 33 H 1.08992 * 115.55046 * 154.41369 * 14 13 12 34 34 H 1.09000 * 117.50448 * 0.02562 * 15 14 13 35 35 H 1.09000 * 117.49708 * 145.02387 * 15 14 13 36 36 H 1.08997 * 117.49787 * 214.97196 * 16 14 13 37 37 H 1.08997 * 117.50051 * 359.97438 * 16 14 13 38 38 H 1.08997 * 115.55923 * 278.44039 * 27 26 24 39 39 H 1.09005 * 117.49518 * 359.97438 * 28 27 26 40 40 H 1.09006 * 117.49674 * 215.00522 * 28 27 26 41 41 H 1.09004 * 117.49933 * 107.48459 * 29 28 27 42 42 H 1.09004 * 117.49421 * 252.47437 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4272 -3.8748 -0.0021 11 6 1.3072 -5.2350 -0.0010 12 7 -0.0127 -5.0382 0.0010 13 6 -0.8522 -6.0536 0.0023 14 6 -2.3316 -5.7664 0.0039 15 6 -2.7696 -4.3150 -0.2022 16 6 -2.8940 -4.9637 1.1788 17 7 -0.4528 -7.3120 0.0011 18 6 0.8393 -7.6081 -0.0057 19 6 1.7765 -6.5573 -0.0012 20 6 3.2040 -6.8910 -0.0033 21 8 4.0508 -6.0177 -0.0044 22 7 3.5520 -8.1975 -0.0038 23 1 4.4911 -8.4405 -0.0055 24 6 2.6206 -9.1642 -0.0020 25 8 2.9863 -10.3235 -0.0021 26 7 1.3007 -8.9067 -0.0001 27 6 0.3447 -10.0167 0.0024 28 6 0.3340 -10.9373 1.2243 29 6 -0.8135 -9.9503 1.0011 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6248 -2.5570 0.8897 33 1 -2.9625 -6.5476 -0.4198 34 1 -1.9879 -3.5679 -0.3394 35 1 -3.6891 -4.1414 -0.7612 36 1 -3.8952 -5.2164 1.5276 37 1 -2.1941 -4.6436 1.9506 38 1 0.1455 -10.4680 -0.9696 39 1 1.0388 -10.7174 2.0263 40 1 0.1284 -11.9945 1.0561 41 1 -1.7739 -10.3581 0.6859 42 1 -0.8642 -9.0810 1.6568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012922833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = 57.206153 kcal Electronic energy + Delta-G solvation = -29828.527723 eV Core-core repulsion = 25709.596218 eV Total energy + Delta-G solvation = -4118.931505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.50545 -40.43407 -39.31475 -37.78476 -36.81097 -35.59093 -34.14288 -33.25715 -33.09410 -31.01955 -28.67909 -26.33441 -25.05710 -24.41433 -23.25935 -22.88065 -22.27255 -22.14412 -21.67217 -19.57454 -19.37481 -18.53169 -17.46828 -17.24550 -16.85301 -16.42206 -15.98412 -15.58080 -15.51228 -15.31232 -14.98769 -14.81050 -14.46186 -14.32611 -14.15338 -13.34045 -13.01392 -12.65144 -12.45893 -12.28206 -12.08138 -11.83620 -11.76495 -11.31970 -11.16403 -11.07825 -10.90791 -10.85282 -10.76461 -10.70503 -10.67362 -10.44830 -10.39156 -10.29599 -9.87625 -9.64622 -9.19887 -9.04512 -8.98986 -8.68507 -7.24950 -6.26025 -4.33088 0.33532 0.90025 1.59306 1.87794 1.96170 2.73299 2.80556 3.21691 3.24041 3.28128 3.35315 3.38624 3.55599 3.66187 4.05415 4.10749 4.28976 4.31662 4.50207 4.53727 4.67907 4.76706 4.83929 4.95285 5.09989 5.11149 5.15171 5.39151 5.41857 5.55392 5.69656 5.73531 5.85000 5.87396 5.91718 5.95110 6.15956 6.21009 6.52759 6.79721 6.99676 7.02121 7.13531 7.26473 7.63463 7.77265 7.88123 8.06883 8.68082 9.31123 10.84342 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003459 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.281354 B = 8092.550284 C =10141.114875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.038 3.962 10 S 0.044 5.956 11 C 0.237 3.763 12 N -0.531 5.531 13 C 0.428 3.572 14 C -0.111 4.111 15 C -0.146 4.146 16 C -0.150 4.150 17 N -0.559 5.559 18 C 0.461 3.539 19 C -0.319 4.319 20 C 0.569 3.431 21 O -0.462 6.462 22 N -0.662 5.662 23 H 0.433 0.567 24 C 0.715 3.285 25 O -0.533 6.533 26 N -0.501 5.501 27 C 0.072 3.928 28 C -0.166 4.166 29 C -0.141 4.141 30 H 0.266 0.734 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 -18.353 1.136 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.084 0.916 9 C -0.109 4.109 10 S 0.293 5.707 11 C -0.018 4.018 12 N -0.253 5.253 13 C 0.157 3.843 14 C -0.131 4.131 15 C -0.183 4.183 16 C -0.189 4.189 17 N -0.284 5.284 18 C 0.217 3.783 19 C -0.341 4.341 20 C 0.358 3.642 21 O -0.333 6.333 22 N -0.332 5.332 23 H 0.276 0.724 24 C 0.416 3.584 25 O -0.405 6.405 26 N -0.227 5.227 27 C -0.030 4.030 28 C -0.204 4.204 29 C -0.179 4.179 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.105 -18.040 1.134 18.536 hybrid contribution 0.310 0.454 -0.130 0.565 sum -3.795 -17.585 1.003 18.018 Atomic orbital electron populations 1.69954 1.06029 1.27400 1.48476 1.24907 0.94971 0.99117 0.94280 0.86392 0.79823 0.82261 0.78447 1.20270 1.20871 1.19507 1.20619 0.93287 0.88797 1.53985 0.91561 1.21596 0.95322 0.91494 1.02506 1.86729 1.09564 0.94363 1.80049 1.24311 0.94690 0.96265 0.86526 1.68990 1.00983 1.34192 1.21088 1.22286 0.95717 0.82358 0.83966 1.20701 0.87415 0.97629 1.07376 1.23158 1.03617 0.93339 0.98234 1.22982 1.01878 1.01902 0.92118 1.67798 1.13202 1.22478 1.24887 1.18222 0.89867 0.83636 0.86554 1.20132 0.93497 0.94573 1.25863 1.17828 0.88686 0.81599 0.76067 1.90938 1.51726 1.45577 1.45076 1.44372 1.11609 1.06670 1.70506 0.72387 1.15448 0.79991 0.85145 0.77767 1.91043 1.78340 1.17442 1.53630 1.43994 1.05000 1.04488 1.69178 1.21686 0.94213 0.90079 0.97017 1.23326 1.01488 0.97353 0.98246 1.23236 0.93297 1.01123 1.00195 0.92387 0.92752 0.92763 0.85213 0.85935 0.88166 0.88007 0.88348 0.85144 0.88473 0.87244 0.87090 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.36 13.29 55.43 0.74 -23.62 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.53 -14.13 9.13 -34.45 -0.31 -14.44 16 8 H 0.07 1.76 7.71 -52.48 -0.40 1.36 16 9 C 0.04 0.94 4.65 36.00 0.17 1.11 16 10 S 0.04 0.94 19.43 -107.50 -2.09 -1.15 16 11 C 0.24 4.53 7.05 -16.07 -0.11 4.42 16 12 N -0.53 -9.79 8.21 -9.24 -0.08 -9.87 16 13 C 0.43 6.69 7.30 -157.03 -1.15 5.54 16 14 C -0.11 -1.40 6.22 -91.77 -0.57 -1.97 16 15 C -0.15 -1.92 10.00 -26.69 -0.27 -2.19 16 16 C -0.15 -1.78 10.24 -26.69 -0.27 -2.05 16 17 N -0.56 -8.12 8.13 -9.89 -0.08 -8.20 16 18 C 0.46 6.91 7.16 -155.39 -1.11 5.80 16 19 C -0.32 -5.42 5.90 -104.78 -0.62 -6.04 16 20 C 0.57 9.09 7.94 -12.69 -0.10 8.99 16 21 O -0.46 -8.42 15.23 5.24 0.08 -8.34 16 22 N -0.66 -8.54 5.19 -17.10 -0.09 -8.63 16 23 H 0.43 4.53 8.85 -40.82 -0.36 4.16 16 24 C 0.72 9.60 8.25 -87.67 -0.72 8.87 16 25 O -0.53 -7.66 16.53 5.31 0.09 -7.58 16 26 N -0.50 -6.55 2.95 -113.71 -0.34 -6.88 16 27 C 0.07 0.76 5.47 -67.90 -0.37 0.38 16 28 C -0.17 -1.45 9.79 -26.74 -0.26 -1.71 16 29 C -0.14 -1.23 9.20 -26.70 -0.25 -1.48 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 31 H 0.05 1.41 8.14 -51.91 -0.42 0.99 16 32 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 33 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.12 2.09 7.51 -51.93 -0.39 1.70 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 1.10 7.37 -51.93 -0.38 0.72 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -29.91 374.73 -12.09 -42.00 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.90 Total: 3.99 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -6.05 Total: 7.08 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.16 Total: -57.20 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.17 Total: -15.92 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.09 Total: -1.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.91 -12.09 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012922833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.208 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds