Wall clock time and date at job start Tue Mar 31 2020 05:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.40518 * 120.42809 * 107.15400 * 3 2 1 5 5 S 1.76194 * 119.90343 * 0.02562 * 4 3 2 6 6 C 1.81005 * 100.00182 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47067 * 180.02562 * 6 5 4 8 8 H 1.08008 * 120.00092 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99998 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99912 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99941 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46897 * 90.00447 * 11 9 7 13 13 H 1.48498 * 109.47191 * 210.00094 * 11 9 7 14 14 H 1.48500 * 109.47174 * 330.00403 * 11 9 7 15 15 N 1.32416 * 120.20088 * 179.97438 * 4 3 2 16 16 C 1.32279 * 121.58647 * 0.15967 * 15 4 3 17 17 N 1.38555 * 119.30389 * 179.97438 * 16 15 4 18 18 C 1.47014 * 111.00088 * 61.65194 * 17 16 15 19 19 C 1.53097 * 109.26180 * 177.60420 * 18 17 16 20 20 O 1.43015 * 109.25510 * 56.84996 * 19 18 17 21 21 C 1.43018 * 113.73683 * 301.32884 * 20 19 18 22 22 C 1.47012 * 111.00386 * 298.01754 * 17 16 15 23 23 C 1.39969 * 121.38790 * 0.24677 * 16 15 4 24 24 C 1.37166 * 119.14036 * 359.21262 * 23 16 15 25 25 C 1.50352 * 122.91844 * 180.96288 * 24 23 16 26 26 C 1.53156 * 110.38650 * 341.88764 * 25 24 23 27 27 C 1.53315 * 108.14007 * 51.21067 * 26 25 24 28 28 C 1.50523 * 118.33261 * 179.19017 * 23 16 15 29 29 H 1.08993 * 109.46904 * 299.99865 * 6 5 4 30 30 H 1.08997 * 109.47101 * 60.00149 * 6 5 4 31 31 H 0.97007 * 119.99780 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.50748 * 297.54406 * 18 17 16 33 33 H 1.09010 * 109.50547 * 57.66965 * 18 17 16 34 34 H 1.08999 * 109.50391 * 296.91528 * 19 18 17 35 35 H 1.08998 * 109.50587 * 176.78693 * 19 18 17 36 36 H 1.09000 * 109.50846 * 298.73724 * 21 20 19 37 37 H 1.09002 * 109.54105 * 178.62959 * 21 20 19 38 38 H 1.09005 * 109.50435 * 302.32925 * 22 17 16 39 39 H 1.09002 * 109.50745 * 62.45482 * 22 17 16 40 40 H 1.09003 * 109.26852 * 102.79491 * 25 24 23 41 41 H 1.08992 * 109.27850 * 222.26983 * 25 24 23 42 42 H 1.09002 * 110.04398 * 291.46373 * 26 25 24 43 43 H 1.09000 * 109.70225 * 170.75911 * 26 25 24 44 44 H 1.09007 * 109.63511 * 170.41347 * 27 26 25 45 45 H 1.08998 * 109.80755 * 49.91039 * 27 26 25 46 46 H 1.08991 * 109.27297 * 282.49485 * 28 23 16 47 47 H 1.09002 * 109.26769 * 41.96256 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2795 0.3583 -1.1577 5 16 2.4072 0.8101 -2.6204 6 6 3.8003 1.1520 -3.7243 7 6 3.2797 1.5702 -5.0753 8 1 2.2154 1.6247 -5.2508 9 6 4.1622 1.8830 -6.0874 10 7 3.7079 2.2484 -7.2663 11 14 6.0029 1.7893 -5.7838 12 1 6.4908 0.4269 -6.1169 13 1 6.6969 2.7861 -6.6382 14 1 6.2844 2.0804 -4.3551 15 7 4.6037 0.3579 -1.1526 16 6 5.2922 0.0225 -0.0740 17 7 6.6769 0.0379 -0.1215 18 6 7.1794 1.3906 -0.4024 19 6 8.7102 1.3741 -0.3867 20 8 9.1812 0.4136 -1.3359 21 6 8.7115 -0.9151 -1.0919 22 6 7.1808 -0.9216 -1.1147 23 6 4.6514 -0.3530 1.1124 24 6 3.2806 -0.3568 1.1588 25 6 2.5059 -0.7245 2.3938 26 6 3.3971 -1.4937 3.3734 27 6 4.6843 -0.6873 3.5818 28 6 5.5023 -0.7391 2.2925 29 1 4.4075 1.9542 -3.3052 30 1 4.4083 0.2537 -3.8309 31 1 4.3287 2.4682 -7.9786 32 1 6.8289 1.7128 -1.3830 33 1 6.8150 2.0798 0.3595 34 1 9.0610 1.1039 0.6093 35 1 9.0876 2.3620 -0.6507 36 1 9.0624 -1.2518 -0.1164 37 1 9.0900 -1.5834 -1.8654 38 1 6.8174 -1.9205 -0.8728 39 1 6.8303 -0.6365 -2.1067 40 1 2.1324 0.1833 2.8677 41 1 1.6630 -1.3568 2.1149 42 1 3.6411 -2.4745 2.9653 43 1 2.8802 -1.6115 4.3257 44 1 5.2605 -1.1217 4.3988 45 1 4.4375 0.3479 3.8177 46 1 5.8811 -1.7506 2.1472 47 1 6.3423 -0.0489 2.3715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013116074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:03 Heat of formation + Delta-G solvation = 16.746007 kcal Electronic energy + Delta-G solvation = -30400.722030 eV Core-core repulsion = 26481.295047 eV Total energy + Delta-G solvation = -3919.426983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25201 -39.44060 -37.19646 -36.75237 -35.50773 -33.15862 -32.32265 -31.44346 -31.37760 -29.64539 -29.46261 -27.30863 -24.49307 -24.19694 -23.81602 -23.07793 -22.44601 -20.86799 -19.81412 -18.46873 -17.77377 -17.48465 -16.93524 -16.39610 -16.18671 -15.56417 -15.23455 -15.08945 -14.89338 -14.46282 -14.34063 -14.19505 -14.04213 -13.87721 -13.61914 -13.29054 -13.10932 -13.04073 -12.84405 -12.74561 -12.57387 -12.48560 -12.30458 -12.24272 -11.67624 -11.51607 -11.25702 -11.13509 -11.02773 -10.92186 -10.85363 -10.67817 -10.28656 -10.04867 -9.93296 -9.61506 -9.53085 -9.38743 -9.25561 -8.79953 -8.77839 -7.12508 -6.26561 -4.31551 0.43813 1.06522 1.94888 2.68653 2.88975 3.10887 3.20781 3.28710 3.32250 3.33385 3.70315 3.71328 3.86579 4.26152 4.33036 4.47665 4.56035 4.64173 4.70525 4.75718 4.84044 4.96490 5.02981 5.04956 5.06196 5.09650 5.20352 5.24950 5.31882 5.33309 5.36031 5.44216 5.48821 5.59154 5.69554 5.73806 5.74481 5.80019 5.89047 5.94493 6.05372 6.11836 6.25472 6.49078 6.59471 6.63193 6.96426 6.98100 7.30249 7.53041 7.69945 8.16753 8.71268 9.28499 10.84786 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008156 B = 0.004849 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3432.295618 B = 5773.069670 C = 8842.376733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.266 3.734 3 C -0.090 4.090 4 C 0.177 3.823 5 S -0.046 6.046 6 C 0.036 3.964 7 C -0.529 4.529 8 H 0.083 0.917 9 C 0.086 3.914 10 N -0.887 5.887 11 Si 0.878 3.122 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.261 1.261 15 N -0.509 5.509 16 C 0.338 3.662 17 N -0.481 5.481 18 C 0.017 3.983 19 C 0.068 3.932 20 O -0.382 6.382 21 C 0.067 3.933 22 C 0.018 3.982 23 C -0.123 4.123 24 C 0.031 3.969 25 C -0.088 4.088 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.055 4.055 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.269 0.731 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 -7.174 23.323 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.050 4.050 3 C -0.105 4.105 4 C -0.075 4.075 5 S 0.202 5.798 6 C -0.113 4.113 7 C -0.568 4.568 8 H 0.101 0.899 9 C -0.120 4.120 10 N -0.524 5.524 11 Si 0.704 3.296 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.185 1.185 15 N -0.224 5.224 16 C 0.102 3.898 17 N -0.205 5.205 18 C -0.110 4.110 19 C -0.009 4.009 20 O -0.301 6.301 21 C -0.010 4.010 22 C -0.109 4.109 23 C -0.131 4.131 24 C 0.020 3.980 25 C -0.125 4.125 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.093 4.093 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.483 -6.829 22.223 24.424 hybrid contribution 1.728 -0.069 0.130 1.734 sum 9.212 -6.898 22.353 25.142 Atomic orbital electron populations 1.81189 1.11506 1.08597 1.07199 1.25057 0.92039 0.93981 0.93876 1.16520 0.85590 1.13025 0.95322 1.23636 0.91834 0.94268 0.97733 1.86138 1.15091 1.78077 1.00526 1.21602 0.92559 1.00560 0.96536 1.20468 0.95868 1.48190 0.92266 0.89930 1.24807 0.98976 0.93730 0.94469 1.69866 1.35467 1.44379 1.02664 0.86801 0.85034 0.78601 0.79190 1.19806 1.20782 1.18535 1.68271 1.06734 1.18156 1.29232 1.20007 0.89633 0.91577 0.88546 1.60367 1.03441 1.08162 1.48549 1.22877 0.96493 0.88930 1.02689 1.22657 0.91816 0.93397 0.93069 1.88032 1.71781 1.17592 1.52662 1.22658 0.91819 0.84595 1.01899 1.22863 0.96491 0.96451 0.95058 1.19805 0.92179 1.04839 0.96279 1.19628 0.92558 0.92480 0.93345 1.20625 0.97851 1.01389 0.92631 1.21622 0.96027 0.99009 0.98838 1.21637 0.96302 1.00725 0.97456 1.20152 0.96859 1.02260 0.90032 0.93230 0.93730 0.92055 0.91596 0.89475 0.92172 0.88160 0.92153 0.88148 0.89460 0.91694 0.89307 0.90148 0.91185 0.91086 0.91215 0.91563 0.90610 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.06 18.54 41.83 0.78 -6.28 16 2 C 0.27 4.27 12.87 -22.47 -0.29 3.98 16 3 C -0.09 -1.36 5.79 -106.20 -0.61 -1.98 16 4 C 0.18 3.14 7.01 -16.44 -0.12 3.02 16 5 S -0.05 -0.97 20.97 -107.50 -2.25 -3.23 16 6 C 0.04 0.85 3.66 36.00 0.13 0.98 16 7 C -0.53 -14.86 9.68 -34.44 -0.33 -15.20 16 8 H 0.08 2.52 7.95 -52.48 -0.42 2.11 16 9 C 0.09 2.43 5.47 -17.82 -0.10 2.34 16 10 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 11 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.26 -6.09 6.54 56.52 0.37 -5.73 16 15 N -0.51 -8.71 8.30 -10.85 -0.09 -8.80 16 16 C 0.34 4.63 5.32 -155.24 -0.83 3.81 16 17 N -0.48 -5.74 3.63 -172.79 -0.63 -6.37 16 18 C 0.02 0.21 5.47 -3.71 -0.02 0.19 16 19 C 0.07 0.69 7.01 37.21 0.26 0.95 16 20 O -0.38 -4.81 10.83 -35.23 -0.38 -5.19 16 21 C 0.07 0.69 7.01 37.21 0.26 0.95 16 22 C 0.02 0.22 5.48 -3.71 -0.02 0.20 16 23 C -0.12 -1.41 5.75 -104.45 -0.60 -2.01 16 24 C 0.03 0.37 5.76 -104.27 -0.60 -0.23 16 25 C -0.09 -0.80 5.10 -27.97 -0.14 -0.94 16 26 C -0.12 -0.80 6.01 -26.49 -0.16 -0.96 16 27 C -0.12 -0.81 5.96 -26.68 -0.16 -0.97 16 28 C -0.06 -0.45 5.27 -28.08 -0.15 -0.60 16 29 H 0.05 1.20 7.18 -51.92 -0.37 0.83 16 30 H 0.04 1.07 7.55 -51.92 -0.39 0.68 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 33 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.76 7.46 -51.93 -0.39 0.37 16 42 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.68 7.71 -51.93 -0.40 0.28 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -31.54 392.69 -11.06 -42.59 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.03 Total: -2.86 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.47 Total: -6.47 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.83 Total: -47.24 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.38 Total: -5.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.25 Total: -3.23 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.54 -11.06 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013116074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.339 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds