Wall clock time and date at job start Tue Mar 31 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86801 * 120.00191 * 2 1 4 4 H 1.48505 * 109.46954 * 269.99953 * 3 2 1 5 5 H 1.48498 * 109.47231 * 29.99736 * 3 2 1 6 6 H 1.48493 * 109.47254 * 150.00062 * 3 2 1 7 7 C 1.38892 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 159.98958 * 7 2 1 9 9 N 1.37141 * 119.99872 * 339.99114 * 7 2 1 10 10 C 1.38228 * 123.96385 * 146.49435 * 9 7 2 11 11 C 1.39664 * 129.42945 * 359.97438 * 10 9 7 12 12 C 1.38569 * 117.21026 * 180.02562 * 11 10 9 13 13 C 1.38030 * 121.98933 * 359.97438 * 12 11 10 14 14 C 1.39104 * 121.38632 * 0.06343 * 13 12 11 15 15 C 1.37795 * 116.99705 * 359.94470 * 14 13 12 16 16 C 1.49514 * 131.62559 * 179.97438 * 15 14 13 17 17 N 1.46646 * 111.25673 * 298.83050 * 16 15 14 18 18 C 1.47042 * 111.46879 * 173.67120 * 17 16 15 19 19 C 1.53447 * 109.57843 * 289.79757 * 18 17 16 20 20 C 1.50765 * 108.25447 * 49.17964 * 19 18 17 21 21 C 1.44478 * 129.52375 * 163.45735 * 20 19 18 22 22 C 1.39855 * 132.82723 * 0.04720 * 21 20 19 23 23 C 1.37277 * 116.91436 * 179.89126 * 22 21 20 24 24 C 1.38536 * 122.10018 * 359.97438 * 23 22 21 25 25 C 1.38409 * 122.23002 * 0.04788 * 24 23 22 26 26 C 1.39324 * 116.95680 * 0.02562 * 25 24 23 27 27 N 1.36584 * 132.04025 * 179.97438 * 26 25 24 28 28 H 0.96998 * 125.09858 * 359.90714 * 27 26 25 29 29 C 1.35492 * 123.28134 * 343.63835 * 20 19 18 30 30 C 1.34972 * 123.96865 * 326.50960 * 9 7 2 31 31 O 1.21282 * 126.51258 * 359.90066 * 30 9 7 32 32 H 0.97000 * 120.00063 * 359.97438 * 1 2 3 33 33 H 1.08003 * 121.39707 * 0.04457 * 11 10 9 34 34 H 1.07997 * 119.00827 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.31181 * 180.02562 * 13 12 11 36 36 H 1.07998 * 121.49872 * 179.97438 * 14 13 12 37 37 H 1.00902 * 111.00099 * 297.96863 * 17 16 15 38 38 H 1.09002 * 109.44992 * 169.76344 * 18 17 16 39 39 H 1.08996 * 109.44798 * 49.83312 * 18 17 16 40 40 H 1.08993 * 109.71077 * 168.88062 * 19 18 17 41 41 H 1.09000 * 109.71154 * 289.47888 * 19 18 17 42 42 H 1.08001 * 121.54790 * 359.89462 * 22 21 20 43 43 H 1.08001 * 118.95423 * 179.97438 * 23 22 21 44 44 H 1.07994 * 118.88482 * 180.02562 * 24 23 22 45 45 H 1.07995 * 121.51976 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0086 -1.2029 0.0005 8 1 3.0398 -1.2312 -0.3195 9 7 1.3850 -2.3545 0.4074 10 6 1.6491 -3.6040 -0.1214 11 6 2.5486 -3.9704 -1.1250 12 6 2.6085 -5.3129 -1.4628 13 6 1.8187 -6.2593 -0.8417 14 6 0.9183 -5.9078 0.1587 15 6 0.8523 -4.5746 0.5007 16 6 0.0198 -3.8476 1.5076 17 7 -1.4105 -3.9876 1.2155 18 6 -2.2372 -3.4031 2.2818 19 6 -2.1360 -4.2695 3.5443 20 6 -0.6774 -4.5319 3.8212 21 6 -0.0414 -5.0038 5.0295 22 6 -0.5368 -5.3602 6.2879 23 6 0.3795 -5.7768 7.2213 24 6 1.7348 -5.8462 6.9426 25 6 2.2529 -5.4996 5.7069 26 6 1.3464 -5.0713 4.7395 27 7 1.5130 -4.6633 3.4467 28 1 2.3638 -4.6102 2.9839 29 6 0.2999 -4.3409 2.9024 30 6 0.4410 -2.4009 1.3710 31 8 0.0127 -1.4615 2.0075 32 1 -0.4850 0.8400 0.0004 33 1 3.1717 -3.2381 -1.6169 34 1 3.2945 -5.6285 -2.2350 35 1 1.9011 -7.2943 -1.1389 36 1 0.2991 -6.6467 0.6456 37 1 -1.6377 -3.5837 0.3192 38 1 -3.2757 -3.3599 1.9535 39 1 -1.8847 -2.3958 2.5035 40 1 -2.5815 -3.7429 4.3882 41 1 -2.6557 -5.2142 3.3845 42 1 -1.5915 -5.3100 6.5149 43 1 0.0329 -6.0595 8.2044 44 1 2.4098 -6.1818 7.7159 45 1 3.3116 -5.5585 5.5019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013635161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:45 Heat of formation + Delta-G solvation = 82.469046 kcal Electronic energy + Delta-G solvation = -32776.241568 eV Core-core repulsion = 28724.220599 eV Total energy + Delta-G solvation = -4052.020969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.74775 -40.37422 -37.56640 -36.96603 -35.79481 -34.79833 -33.21258 -32.09397 -31.19335 -29.62962 -28.91164 -28.69950 -27.90952 -26.09302 -24.59591 -22.51037 -22.26192 -21.67688 -21.58461 -20.53432 -20.04643 -18.32740 -17.59974 -17.42580 -16.76566 -16.16418 -15.64584 -15.34121 -15.02610 -14.78106 -14.57257 -14.31365 -14.12254 -13.81421 -13.73379 -13.64778 -13.43419 -13.37643 -13.18777 -12.67362 -12.51063 -12.12000 -11.92080 -11.72510 -11.62008 -11.42395 -11.32331 -11.20081 -11.10173 -11.04488 -10.86483 -10.52576 -10.45131 -10.24090 -9.89865 -9.66882 -9.25538 -8.72613 -8.39677 -7.99278 -7.66655 -7.24620 -7.08176 -6.55306 -4.27476 1.27105 1.75559 1.86455 1.92366 2.90429 3.06232 3.15648 3.18720 3.30796 3.58033 3.92955 4.10898 4.40193 4.50897 4.57958 4.85785 4.92736 4.94395 5.07431 5.15742 5.26291 5.31409 5.37008 5.42651 5.46871 5.53086 5.67069 5.70885 5.85986 5.93800 5.97071 6.07433 6.10069 6.14445 6.23877 6.25104 6.34209 6.53917 6.58444 6.66292 6.78302 6.84876 6.94817 6.97447 7.03952 7.09268 7.19660 7.26296 7.40120 7.42717 7.62580 7.74788 7.80328 8.34979 8.58984 9.02494 9.60211 10.49555 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.004434 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.487231 B = 6313.974638 C = 7178.338934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.062 3.938 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.379 5.379 10 C 0.176 3.824 11 C -0.163 4.163 12 C -0.074 4.074 13 C -0.197 4.197 14 C -0.028 4.028 15 C -0.180 4.180 16 C 0.194 3.806 17 N -0.647 5.647 18 C 0.041 3.959 19 C -0.034 4.034 20 C -0.157 4.157 21 C -0.095 4.095 22 C -0.067 4.067 23 C -0.156 4.156 24 C -0.109 4.109 25 C -0.130 4.130 26 C 0.100 3.900 27 N -0.571 5.571 28 H 0.415 0.585 29 C 0.115 3.885 30 C 0.470 3.530 31 O -0.465 6.465 32 H 0.274 0.726 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.355 0.645 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 -11.406 5.369 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.151 4.151 3 Si 0.749 3.251 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.497 4.497 8 H 0.115 0.885 9 N -0.083 5.083 10 C 0.071 3.929 11 C -0.185 4.185 12 C -0.093 4.093 13 C -0.217 4.217 14 C -0.047 4.047 15 C -0.185 4.185 16 C 0.099 3.901 17 N -0.279 5.279 18 C -0.088 4.088 19 C -0.072 4.072 20 C -0.164 4.164 21 C -0.100 4.100 22 C -0.086 4.086 23 C -0.176 4.176 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.009 4.009 27 N -0.170 5.170 28 H 0.252 0.748 29 C 0.005 3.995 30 C 0.256 3.744 31 O -0.336 6.336 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.029 -11.104 5.947 12.596 hybrid contribution 1.037 1.885 -0.666 2.252 sum 1.066 -9.220 5.281 10.678 Atomic orbital electron populations 1.69887 1.06571 1.28672 1.39796 1.25291 0.95115 1.00049 0.94620 0.86006 0.79716 0.80962 0.78393 1.20056 1.20425 1.19187 1.19290 0.96438 0.83663 1.50292 0.88510 1.41539 1.33586 1.04557 1.28621 1.18975 0.94538 0.86463 0.92877 1.20609 1.02277 0.95786 0.99874 1.20778 0.97876 0.92356 0.98259 1.20741 1.01120 0.98867 1.00964 1.20415 0.95946 0.93295 0.95085 1.19393 1.02290 0.94073 1.02706 1.18214 0.90245 0.92923 0.88749 1.60398 1.00025 1.61350 1.06160 1.22224 0.97009 0.98131 0.91424 1.20000 0.90976 0.99583 0.96679 1.19875 0.95081 1.09495 0.91969 1.18803 0.91609 1.05167 0.94402 1.20550 0.98982 0.97822 0.91239 1.20539 0.93135 1.04511 0.99404 1.20695 0.95317 1.00980 0.95810 1.20355 0.97688 1.04529 0.92457 1.18404 0.95064 1.02253 0.85183 1.41192 1.08462 1.56964 1.10417 0.74824 1.19489 0.84425 1.01884 0.93713 1.20950 0.82664 0.89528 0.81208 1.90572 1.55266 1.41776 1.46033 0.91583 0.85455 0.86964 0.87081 0.85851 0.82511 0.90431 0.91598 0.91101 0.90907 0.85636 0.86901 0.86618 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.80 11.22 55.49 0.62 -22.18 16 2 C 0.06 1.64 4.78 -17.48 -0.08 1.56 16 3 Si 0.92 20.51 29.60 -169.99 -5.03 15.48 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.37 -9.72 9.43 -14.93 -0.14 -9.86 16 8 H 0.10 2.39 7.88 -52.49 -0.41 1.98 16 9 N -0.38 -9.39 2.79 -58.61 -0.16 -9.55 16 10 C 0.18 3.75 6.61 -83.73 -0.55 3.19 16 11 C -0.16 -3.02 9.91 -38.93 -0.39 -3.40 16 12 C -0.07 -1.13 9.93 -39.54 -0.39 -1.52 16 13 C -0.20 -2.93 9.99 -39.34 -0.39 -3.32 16 14 C -0.03 -0.47 10.25 -39.42 -0.40 -0.87 16 15 C -0.18 -3.47 5.15 -104.64 -0.54 -4.01 16 16 C 0.19 3.97 0.89 -135.53 -0.12 3.85 16 17 N -0.65 -12.12 6.26 -103.68 -0.65 -12.77 16 18 C 0.04 0.72 6.45 -3.51 -0.02 0.70 16 19 C -0.03 -0.55 6.48 -27.62 -0.18 -0.73 16 20 C -0.16 -2.88 6.23 -103.12 -0.64 -3.52 16 21 C -0.09 -1.62 6.26 -105.42 -0.66 -2.28 16 22 C -0.07 -0.96 10.26 -39.33 -0.40 -1.36 16 23 C -0.16 -1.97 9.89 -39.82 -0.39 -2.37 16 24 C -0.11 -1.36 9.93 -39.41 -0.39 -1.75 16 25 C -0.13 -1.81 10.28 -39.11 -0.40 -2.21 16 26 C 0.10 1.68 7.19 -83.93 -0.60 1.07 16 27 N -0.57 -10.13 5.94 -6.61 -0.04 -10.17 16 28 H 0.41 6.90 8.96 -40.82 -0.37 6.54 16 29 C 0.11 2.23 5.80 -81.41 -0.47 1.75 16 30 C 0.47 11.71 6.10 -10.60 -0.06 11.64 16 31 O -0.47 -13.07 13.44 5.56 0.07 -12.99 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.13 2.29 7.99 -52.48 -0.42 1.87 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.36 6.88 8.78 -39.29 -0.34 6.54 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.40 5.92 -51.93 -0.31 1.10 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -30.99 371.04 -12.06 -43.05 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -5.21 Total: 16.99 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -7.25 Total: -13.45 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.23 Total: -54.67 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.99 -12.06 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013635161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.520 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds