Wall clock time and date at job start Tue Mar 31 2020 05:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86801 * 120.00191 * 2 1 4 4 H 1.48505 * 109.46954 * 269.99953 * 3 2 1 5 5 H 1.48498 * 109.47231 * 29.99736 * 3 2 1 6 6 H 1.48493 * 109.47254 * 150.00062 * 3 2 1 7 7 C 1.38892 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 159.98958 * 7 2 1 9 9 N 1.37141 * 119.99872 * 339.99114 * 7 2 1 10 10 C 1.38228 * 123.96385 * 146.49435 * 9 7 2 11 11 C 1.39664 * 129.42945 * 359.97438 * 10 9 7 12 12 C 1.38569 * 117.21026 * 180.02562 * 11 10 9 13 13 C 1.38030 * 121.98933 * 359.97438 * 12 11 10 14 14 C 1.39104 * 121.38632 * 0.06343 * 13 12 11 15 15 C 1.37795 * 116.99705 * 359.94470 * 14 13 12 16 16 C 1.49514 * 131.62559 * 179.97438 * 15 14 13 17 17 N 1.46646 * 111.25673 * 298.83050 * 16 15 14 18 18 C 1.47042 * 111.46879 * 173.67120 * 17 16 15 19 19 C 1.53447 * 109.57843 * 289.79757 * 18 17 16 20 20 C 1.50765 * 108.25447 * 49.17964 * 19 18 17 21 21 C 1.44478 * 129.52375 * 163.45735 * 20 19 18 22 22 C 1.39855 * 132.82723 * 0.04720 * 21 20 19 23 23 C 1.37277 * 116.91436 * 179.89126 * 22 21 20 24 24 C 1.38536 * 122.10018 * 359.97438 * 23 22 21 25 25 C 1.38409 * 122.23002 * 0.04788 * 24 23 22 26 26 C 1.39324 * 116.95680 * 0.02562 * 25 24 23 27 27 N 1.36584 * 132.04025 * 179.97438 * 26 25 24 28 28 H 0.96998 * 125.09858 * 359.90714 * 27 26 25 29 29 C 1.35492 * 123.28134 * 343.63835 * 20 19 18 30 30 C 1.34972 * 123.96865 * 326.50960 * 9 7 2 31 31 O 1.21282 * 126.51258 * 359.90066 * 30 9 7 32 32 H 0.97000 * 120.00063 * 359.97438 * 1 2 3 33 33 H 1.08003 * 121.39707 * 0.04457 * 11 10 9 34 34 H 1.07997 * 119.00827 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.31181 * 180.02562 * 13 12 11 36 36 H 1.07998 * 121.49872 * 179.97438 * 14 13 12 37 37 H 1.00902 * 111.00099 * 297.96863 * 17 16 15 38 38 H 1.09002 * 109.44992 * 169.76344 * 18 17 16 39 39 H 1.08996 * 109.44798 * 49.83312 * 18 17 16 40 40 H 1.08993 * 109.71077 * 168.88062 * 19 18 17 41 41 H 1.09000 * 109.71154 * 289.47888 * 19 18 17 42 42 H 1.08001 * 121.54790 * 359.89462 * 22 21 20 43 43 H 1.08001 * 118.95423 * 179.97438 * 23 22 21 44 44 H 1.07994 * 118.88482 * 180.02562 * 24 23 22 45 45 H 1.07995 * 121.51976 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0086 -1.2029 0.0005 8 1 3.0398 -1.2312 -0.3195 9 7 1.3850 -2.3545 0.4074 10 6 1.6491 -3.6040 -0.1214 11 6 2.5486 -3.9704 -1.1250 12 6 2.6085 -5.3129 -1.4628 13 6 1.8187 -6.2593 -0.8417 14 6 0.9183 -5.9078 0.1587 15 6 0.8523 -4.5746 0.5007 16 6 0.0198 -3.8476 1.5076 17 7 -1.4105 -3.9876 1.2155 18 6 -2.2372 -3.4031 2.2818 19 6 -2.1360 -4.2695 3.5443 20 6 -0.6774 -4.5319 3.8212 21 6 -0.0414 -5.0038 5.0295 22 6 -0.5368 -5.3602 6.2879 23 6 0.3795 -5.7768 7.2213 24 6 1.7348 -5.8462 6.9426 25 6 2.2529 -5.4996 5.7069 26 6 1.3464 -5.0713 4.7395 27 7 1.5130 -4.6633 3.4467 28 1 2.3638 -4.6102 2.9839 29 6 0.2999 -4.3409 2.9024 30 6 0.4410 -2.4009 1.3710 31 8 0.0127 -1.4615 2.0075 32 1 -0.4850 0.8400 0.0004 33 1 3.1717 -3.2381 -1.6169 34 1 3.2945 -5.6285 -2.2350 35 1 1.9011 -7.2943 -1.1389 36 1 0.2991 -6.6467 0.6456 37 1 -1.6377 -3.5837 0.3192 38 1 -3.2757 -3.3599 1.9535 39 1 -1.8847 -2.3958 2.5035 40 1 -2.5815 -3.7429 4.3882 41 1 -2.6557 -5.2142 3.3845 42 1 -1.5915 -5.3100 6.5149 43 1 0.0329 -6.0595 8.2044 44 1 2.4098 -6.1818 7.7159 45 1 3.3116 -5.5585 5.5019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013635161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:44 Heat of formation + Delta-G solvation = 63.932630 kcal Electronic energy + Delta-G solvation = -32777.045367 eV Core-core repulsion = 28724.220599 eV Total energy + Delta-G solvation = -4052.824768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.16573 -41.76586 -39.07090 -38.34574 -37.08548 -36.50027 -34.84762 -33.65032 -32.52983 -30.93471 -30.30918 -29.93371 -29.29127 -27.76962 -26.11221 -23.83368 -23.64084 -23.09499 -22.85182 -22.06858 -21.45132 -19.68880 -19.21222 -18.81776 -18.16238 -17.60438 -17.25648 -16.71713 -16.54767 -16.36206 -16.08187 -15.62721 -15.45100 -15.24688 -15.03635 -14.94179 -14.84808 -14.82667 -14.49474 -14.15319 -13.83860 -13.71458 -13.63390 -13.10757 -12.96477 -12.94733 -12.81984 -12.57089 -12.47822 -12.37254 -12.25014 -12.12857 -11.67960 -11.67408 -11.59328 -11.34290 -10.55933 -10.42953 -9.76812 -9.46726 -9.00882 -8.81488 -8.46527 -8.43889 -6.26819 0.13109 0.32477 0.50252 0.76502 1.26351 1.32656 1.42420 1.58425 1.93319 2.02708 2.16708 2.74980 2.85970 3.01215 3.09484 3.18758 3.42620 3.63843 3.75888 3.83813 3.96606 4.01656 4.16615 4.27061 4.29425 4.33979 4.51225 4.57848 4.59236 4.63787 4.67485 4.78772 4.84821 4.87957 4.94954 5.05964 5.16565 5.18036 5.22936 5.25301 5.45710 5.57728 5.59078 5.66038 5.70530 5.74772 5.79531 5.81560 5.93136 6.08769 6.15196 6.27552 6.51747 6.53608 6.76644 7.15209 7.80105 8.54584 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.004434 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.487231 B = 6313.974638 C = 7178.338934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.011 3.989 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.389 4.389 8 H 0.100 0.900 9 N -0.401 5.401 10 C 0.134 3.866 11 C -0.168 4.168 12 C -0.067 4.067 13 C -0.168 4.168 14 C -0.032 4.032 15 C -0.177 4.177 16 C 0.205 3.795 17 N -0.636 5.636 18 C 0.042 3.958 19 C -0.029 4.029 20 C -0.165 4.165 21 C -0.124 4.124 22 C -0.074 4.074 23 C -0.153 4.153 24 C -0.099 4.099 25 C -0.142 4.142 26 C 0.081 3.919 27 N -0.575 5.575 28 H 0.413 0.587 29 C 0.080 3.920 30 C 0.453 3.547 31 O -0.522 6.522 32 H 0.269 0.731 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.346 0.654 38 H 0.104 0.896 39 H 0.022 0.978 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -15.020 6.245 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.515 4.515 8 H 0.117 0.883 9 N -0.108 5.108 10 C 0.032 3.968 11 C -0.190 4.190 12 C -0.086 4.086 13 C -0.188 4.188 14 C -0.050 4.050 15 C -0.181 4.181 16 C 0.110 3.890 17 N -0.266 5.266 18 C -0.087 4.087 19 C -0.067 4.067 20 C -0.173 4.173 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.172 4.172 24 C -0.119 4.119 25 C -0.162 4.162 26 C -0.027 4.027 27 N -0.175 5.175 28 H 0.250 0.750 29 C -0.030 4.030 30 C 0.241 3.759 31 O -0.398 6.398 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.122 0.878 39 H 0.041 0.959 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.169 0.831 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.083 -14.801 6.785 16.318 hybrid contribution 0.808 2.726 -0.895 2.981 sum 1.891 -12.075 5.890 13.568 Atomic orbital electron populations 1.70011 1.08077 1.28766 1.42089 1.26219 0.95810 1.03279 0.94383 0.85071 0.78228 0.76730 0.79126 1.18067 1.21262 1.18728 1.19592 0.96793 0.84986 1.50111 0.88266 1.41662 1.34277 1.05344 1.29511 1.19373 0.96751 0.85531 0.95097 1.20899 1.01462 0.97592 0.99050 1.21195 0.98112 0.90677 0.98604 1.21269 0.98302 1.00816 0.98372 1.20726 0.96597 0.92153 0.95564 1.19544 1.01670 0.94891 1.02028 1.18019 0.90748 0.90086 0.90194 1.60531 0.99643 1.60475 1.05988 1.22274 0.97903 0.96267 0.92265 1.20050 0.90359 1.00239 0.96018 1.20306 0.95850 1.08668 0.92429 1.19088 0.91831 1.06707 0.95208 1.20908 1.00553 0.97379 0.90351 1.20987 0.92968 1.02860 1.00426 1.21188 0.96056 0.98837 0.95771 1.20734 0.98427 1.04576 0.92505 1.18870 0.95909 1.02819 0.85126 1.41173 1.07912 1.57477 1.10974 0.75036 1.19447 0.85586 1.04299 0.93624 1.21736 0.82440 0.91096 0.80605 1.90500 1.57345 1.43877 1.48076 0.92214 0.85754 0.82866 0.82740 0.84234 0.83622 0.87811 0.95929 0.89666 0.88691 0.83616 0.83509 0.83133 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.26 11.22 21.65 0.24 -51.02 16 2 C 0.01 0.62 4.78 84.91 0.41 1.03 16 3 Si 0.99 44.25 29.60 68.60 2.03 46.28 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.39 -21.63 9.43 84.02 0.79 -20.84 16 8 H 0.10 5.19 7.88 -2.91 -0.02 5.17 16 9 N -0.40 -21.21 2.79 -457.63 -1.28 -22.48 16 10 C 0.13 5.87 6.61 38.94 0.26 6.13 16 11 C -0.17 -6.16 9.91 22.69 0.22 -5.94 16 12 C -0.07 -1.84 9.93 22.30 0.22 -1.62 16 13 C -0.17 -4.31 9.99 22.43 0.22 -4.09 16 14 C -0.03 -0.98 10.25 22.37 0.23 -0.75 16 15 C -0.18 -6.92 5.15 -19.88 -0.10 -7.03 16 16 C 0.21 8.79 0.89 1.12 0.00 8.79 16 17 N -0.64 -24.88 6.26 -481.92 -3.02 -27.90 16 18 C 0.04 1.54 6.45 86.43 0.56 2.09 16 19 C -0.03 -0.92 6.48 30.02 0.19 -0.73 16 20 C -0.17 -6.14 6.23 -18.89 -0.12 -6.25 16 21 C -0.12 -4.16 6.26 -20.38 -0.13 -4.28 16 22 C -0.07 -1.93 10.26 22.43 0.23 -1.70 16 23 C -0.15 -3.32 9.89 22.11 0.22 -3.10 16 24 C -0.10 -2.14 9.93 22.38 0.22 -1.92 16 25 C -0.14 -3.71 10.28 22.57 0.23 -3.48 16 26 C 0.08 2.70 7.19 39.58 0.28 2.99 16 27 N -0.58 -21.08 5.94 -174.82 -1.04 -22.12 16 28 H 0.41 14.44 8.96 -92.71 -0.83 13.61 16 29 C 0.08 3.22 5.80 41.11 0.24 3.45 16 30 C 0.45 24.31 6.10 87.82 0.54 24.84 16 31 O -0.52 -32.05 13.44 -3.03 -0.04 -32.09 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.12 4.52 7.99 -2.91 -0.02 4.50 16 34 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 35 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 37 H 0.35 14.27 8.78 -89.69 -0.79 13.48 16 38 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.02 1.04 5.92 -2.39 -0.01 1.03 16 40 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -75.20 371.04 1.07 -74.13 By element: Atomic # 1 Polarization: 48.14 SS G_CDS: -0.55 Total: 47.59 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.72 Total: -12.40 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -5.09 Total: -123.52 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.04 Total: -32.09 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -75.20 1.07 -74.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013635161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.067 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds