Wall clock time and date at job start Tue Mar 31 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 0.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 179.72366 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.85292 * 303.78852 * 12 10 9 14 14 C 1.54623 * 110.96861 * 67.61642 * 12 10 9 15 15 C 1.51288 * 104.19338 * 142.91276 * 14 12 10 16 16 O 1.21276 * 124.94064 * 163.78019 * 15 14 12 17 17 N 1.34414 * 110.11414 * 343.75472 * 15 14 12 18 18 C 1.46507 * 124.34612 * 179.57056 * 17 15 14 19 19 C 1.53002 * 109.46938 * 270.01412 * 18 17 15 20 20 C 1.50699 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.34234 * 126.50040 * 265.03289 * 20 19 18 22 22 N 1.36817 * 109.93305 * 180.02562 * 21 20 19 23 23 H 0.96994 * 125.06459 * 180.02562 * 22 21 20 24 24 C 1.37813 * 109.86012 * 359.97438 * 22 21 20 25 25 C 1.39094 * 133.39234 * 180.02562 * 24 22 21 26 26 C 1.37717 * 119.95280 * 179.97438 * 25 24 22 27 27 C 1.39040 * 120.64662 * 0.02562 * 26 25 24 28 28 F 1.35096 * 119.83161 * 179.97438 * 27 26 25 29 29 C 1.37788 * 120.33475 * 359.97438 * 27 26 25 30 30 C 1.39682 * 119.62634 * 359.73992 * 29 27 26 31 31 C 1.46760 * 111.30412 * 359.58353 * 17 15 14 32 32 H 0.97004 * 120.00486 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 34 34 H 1.08995 * 110.48946 * 261.59098 * 14 12 10 35 35 H 1.09008 * 110.48567 * 24.24292 * 14 12 10 36 36 H 1.08998 * 109.47372 * 30.02089 * 18 17 15 37 37 H 1.09004 * 109.46808 * 150.01923 * 18 17 15 38 38 H 1.08998 * 109.47642 * 300.00511 * 19 18 17 39 39 H 1.09005 * 109.46669 * 60.00135 * 19 18 17 40 40 H 1.07997 * 125.03107 * 359.97108 * 21 20 19 41 41 H 1.08003 * 120.02787 * 359.95199 * 25 24 22 42 42 H 1.08001 * 119.67777 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.18734 * 180.02562 * 29 27 26 44 44 H 1.09000 * 110.24744 * 258.01873 * 31 17 15 45 45 H 1.09007 * 110.24434 * 136.01844 * 31 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 -0.0052 10 6 4.0538 -2.3704 -0.0103 11 8 3.4473 -3.4208 -0.0104 12 6 5.5608 -2.3704 -0.0161 13 1 5.9455 -1.8020 -0.8628 14 6 6.1191 -1.8235 1.3181 15 6 7.3455 -2.6695 1.5815 16 8 8.2242 -2.3923 2.3701 17 7 7.3190 -3.7732 0.8148 18 6 8.3601 -4.8040 0.8138 19 6 9.4229 -4.4544 -0.2300 20 6 10.4941 -5.5144 -0.2307 21 6 11.6542 -5.4775 0.4436 22 7 12.3724 -6.6160 0.1986 23 1 13.2435 -6.8171 0.5749 24 6 11.6730 -7.4348 -0.6614 25 6 11.9373 -8.6800 -1.2220 26 6 11.0201 -9.2615 -2.0689 27 6 9.8269 -8.6156 -2.3726 28 9 8.9391 -9.2009 -3.2058 29 6 9.5454 -7.3815 -1.8281 30 6 10.4641 -6.7828 -0.9629 31 6 6.1136 -3.8129 -0.0213 32 1 -0.4851 0.8400 -0.0004 33 1 3.8648 -0.3632 -0.0056 34 1 6.3947 -0.7741 1.2148 35 1 5.3893 -1.9505 2.1178 36 1 8.8220 -4.8550 1.7997 37 1 7.9156 -5.7691 0.5705 38 1 8.9610 -4.4034 -1.2159 39 1 9.8673 -3.4893 0.0133 40 1 11.9737 -4.6686 1.0839 41 1 12.8613 -9.1904 -0.9936 42 1 11.2297 -10.2287 -2.5014 43 1 8.6177 -6.8822 -2.0653 44 1 5.3815 -4.4990 0.4046 45 1 6.3688 -4.1153 -1.0370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013944848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:31 Heat of formation + Delta-G solvation = -56.086932 kcal Electronic energy + Delta-G solvation = -30570.287089 eV Core-core repulsion = 26081.488657 eV Total energy + Delta-G solvation = -4488.798432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.99218 -41.66963 -40.47679 -38.34079 -37.02161 -36.18530 -34.64612 -34.06116 -32.36875 -31.67808 -30.42725 -29.28618 -28.03719 -27.46352 -25.39324 -23.77291 -23.40670 -22.32500 -22.20274 -19.84923 -19.38650 -19.26814 -18.40504 -18.31850 -17.55807 -16.81724 -16.62637 -16.52559 -15.77505 -15.66051 -15.41286 -15.19936 -14.80402 -14.58432 -14.40797 -14.19309 -14.03340 -13.75180 -13.44944 -13.37244 -13.25686 -13.11934 -12.88799 -12.73450 -12.64755 -12.51212 -12.28791 -11.99653 -11.63632 -11.36459 -11.32916 -11.17025 -11.07423 -10.93458 -10.63640 -10.08104 -10.05166 -9.76046 -9.66331 -8.79082 -8.60319 -8.50909 -8.28045 -7.99050 -6.39114 -3.91354 0.60507 1.05291 2.21769 2.66574 2.70277 2.98530 3.02812 3.05030 3.12352 3.35432 3.55242 3.97261 4.03842 4.23894 4.27129 4.44452 4.54778 4.58658 4.70053 4.77848 4.86841 4.97314 5.08899 5.12779 5.16155 5.17941 5.28487 5.32002 5.42565 5.49502 5.50723 5.67756 5.70274 5.74621 5.84665 5.87818 5.93271 5.98298 6.00192 6.21891 6.31068 6.35213 6.59228 6.70842 7.08173 7.16332 7.47046 8.04478 8.24889 8.47890 8.84850 9.32607 9.68730 10.73299 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.002013 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.360460 B =13903.756472 C =15270.274721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.579 5.579 10 C 0.457 3.543 11 O -0.573 6.573 12 C -0.116 4.116 13 H 0.103 0.897 14 C -0.147 4.147 15 C 0.523 3.477 16 O -0.541 6.541 17 N -0.619 5.619 18 C 0.133 3.867 19 C -0.061 4.061 20 C -0.164 4.164 21 C 0.066 3.934 22 N -0.593 5.593 23 H 0.418 0.582 24 C 0.085 3.915 25 C -0.101 4.101 26 C -0.132 4.132 27 C 0.071 3.929 28 F -0.141 7.141 29 C -0.104 4.104 30 C -0.075 4.075 31 C 0.119 3.881 32 H 0.275 0.725 33 H 0.372 0.628 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.174 0.826 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.096 0.904 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.633 -12.027 -1.936 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.139 0.861 9 N -0.216 5.216 10 C 0.242 3.758 11 O -0.457 6.457 12 C -0.138 4.138 13 H 0.121 0.879 14 C -0.188 4.188 15 C 0.311 3.689 16 O -0.418 6.418 17 N -0.352 5.352 18 C 0.011 3.989 19 C -0.100 4.100 20 C -0.172 4.172 21 C -0.060 4.060 22 N -0.196 5.196 23 H 0.255 0.745 24 C -0.022 4.022 25 C -0.121 4.121 26 C -0.152 4.152 27 C 0.051 3.949 28 F -0.120 7.120 29 C -0.123 4.123 30 C -0.080 4.080 31 C -0.004 4.004 32 H 0.086 0.914 33 H 0.205 0.795 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.192 0.808 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.114 0.886 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 27.584 -12.541 -1.485 30.337 hybrid contribution 0.787 1.203 -0.065 1.439 sum 28.370 -11.337 -1.549 30.591 Atomic orbital electron populations 1.69615 1.05701 1.27724 1.48420 1.25062 0.95510 0.98097 0.97309 0.86698 0.79938 0.83955 0.79039 1.19487 1.20052 1.19247 1.19454 0.79098 0.96727 1.48464 0.86099 1.42187 1.07606 1.06148 1.65694 1.19221 0.87246 0.84643 0.84697 1.90574 1.69176 1.30911 1.55020 1.22135 0.95954 0.97215 0.98494 0.87876 1.22389 0.96696 1.00846 0.98868 1.20878 0.86964 0.81755 0.79328 1.90679 1.40490 1.74035 1.36632 1.48377 1.22307 1.22396 1.42111 1.21351 0.87483 0.90225 0.99878 1.20312 0.93536 0.96012 1.00180 1.20073 0.97326 0.96073 1.03728 1.21759 0.92572 0.90357 1.01343 1.41741 1.19568 1.16673 1.41611 0.74524 1.18246 0.93337 0.93900 0.96709 1.19808 1.00354 0.92877 0.99089 1.20764 0.93060 1.01030 1.00354 1.17309 0.89186 0.93265 0.95170 1.91501 1.67233 1.83854 1.69422 1.20472 1.00300 0.94044 0.97515 1.18797 0.94016 0.95286 0.99943 1.22013 0.85670 0.97128 0.95592 0.91444 0.79466 0.87756 0.87109 0.90079 0.90181 0.90621 0.90585 0.80838 0.85292 0.84492 0.84505 0.88640 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.96 55.50 0.77 -24.02 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 18.62 27.73 -169.99 -4.71 13.91 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 7 C -0.31 -8.33 10.16 -14.93 -0.15 -8.48 16 8 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 9 N -0.58 -12.90 5.09 -10.96 -0.06 -12.95 16 10 C 0.46 9.46 7.01 -10.98 -0.08 9.38 16 11 O -0.57 -14.18 15.08 5.55 0.08 -14.09 16 12 C -0.12 -1.72 3.54 -90.14 -0.32 -2.03 16 13 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.15 -2.10 6.41 -26.74 -0.17 -2.27 16 15 C 0.52 7.79 8.02 -10.86 -0.09 7.70 16 16 O -0.54 -9.47 17.59 5.56 0.10 -9.38 16 17 N -0.62 -7.97 2.93 -172.41 -0.51 -8.47 16 18 C 0.13 1.42 5.92 -4.04 -0.02 1.40 16 19 C -0.06 -0.57 6.07 -27.88 -0.17 -0.74 16 20 C -0.16 -1.47 5.57 -102.71 -0.57 -2.04 16 21 C 0.07 0.46 11.73 -16.74 -0.20 0.27 16 22 N -0.59 -3.59 6.08 -10.64 -0.06 -3.66 16 23 H 0.42 1.21 8.96 -40.82 -0.37 0.84 16 24 C 0.09 0.70 7.27 -83.96 -0.61 0.09 16 25 C -0.10 -0.70 10.06 -39.45 -0.40 -1.10 16 26 C -0.13 -1.04 9.99 -39.47 -0.39 -1.43 16 27 C 0.07 0.70 7.29 -39.45 -0.29 0.41 16 28 F -0.14 -1.56 17.26 2.25 0.04 -1.52 16 29 C -0.10 -1.03 10.07 -39.21 -0.40 -1.43 16 30 C -0.08 -0.73 6.35 -105.13 -0.67 -1.40 16 31 C 0.12 1.61 6.71 -3.12 -0.02 1.59 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.37 7.28 5.77 -40.82 -0.24 7.04 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.11 1.69 7.89 -51.92 -0.41 1.28 16 36 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.10 1.50 6.96 -51.93 -0.36 1.13 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -34.16 388.41 -8.70 -42.86 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.57 Total: 10.48 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -4.64 Total: 0.99 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.15 Total: -49.10 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.47 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.71 Total: 13.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.16 -8.70 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013944848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.227 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds