Wall clock time and date at job start Tue Mar 31 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 0.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 179.72366 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.85292 * 303.78852 * 12 10 9 14 14 C 1.54623 * 110.96861 * 67.61642 * 12 10 9 15 15 C 1.51288 * 104.19338 * 142.91276 * 14 12 10 16 16 O 1.21276 * 124.94064 * 163.78019 * 15 14 12 17 17 N 1.34414 * 110.11414 * 343.75472 * 15 14 12 18 18 C 1.46507 * 124.34612 * 179.57056 * 17 15 14 19 19 C 1.53002 * 109.46938 * 270.01412 * 18 17 15 20 20 C 1.50699 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.34234 * 126.50040 * 265.03289 * 20 19 18 22 22 N 1.36817 * 109.93305 * 180.02562 * 21 20 19 23 23 H 0.96994 * 125.06459 * 180.02562 * 22 21 20 24 24 C 1.37813 * 109.86012 * 359.97438 * 22 21 20 25 25 C 1.39094 * 133.39234 * 180.02562 * 24 22 21 26 26 C 1.37717 * 119.95280 * 179.97438 * 25 24 22 27 27 C 1.39040 * 120.64662 * 0.02562 * 26 25 24 28 28 F 1.35096 * 119.83161 * 179.97438 * 27 26 25 29 29 C 1.37788 * 120.33475 * 359.97438 * 27 26 25 30 30 C 1.39682 * 119.62634 * 359.73992 * 29 27 26 31 31 C 1.46760 * 111.30412 * 359.58353 * 17 15 14 32 32 H 0.97004 * 120.00486 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 34 34 H 1.08995 * 110.48946 * 261.59098 * 14 12 10 35 35 H 1.09008 * 110.48567 * 24.24292 * 14 12 10 36 36 H 1.08998 * 109.47372 * 30.02089 * 18 17 15 37 37 H 1.09004 * 109.46808 * 150.01923 * 18 17 15 38 38 H 1.08998 * 109.47642 * 300.00511 * 19 18 17 39 39 H 1.09005 * 109.46669 * 60.00135 * 19 18 17 40 40 H 1.07997 * 125.03107 * 359.97108 * 21 20 19 41 41 H 1.08003 * 120.02787 * 359.95199 * 25 24 22 42 42 H 1.08001 * 119.67777 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.18734 * 180.02562 * 29 27 26 44 44 H 1.09000 * 110.24744 * 258.01873 * 31 17 15 45 45 H 1.09007 * 110.24434 * 136.01844 * 31 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 -0.0052 10 6 4.0538 -2.3704 -0.0103 11 8 3.4473 -3.4208 -0.0104 12 6 5.5608 -2.3704 -0.0161 13 1 5.9455 -1.8020 -0.8628 14 6 6.1191 -1.8235 1.3181 15 6 7.3455 -2.6695 1.5815 16 8 8.2242 -2.3923 2.3701 17 7 7.3190 -3.7732 0.8148 18 6 8.3601 -4.8040 0.8138 19 6 9.4229 -4.4544 -0.2300 20 6 10.4941 -5.5144 -0.2307 21 6 11.6542 -5.4775 0.4436 22 7 12.3724 -6.6160 0.1986 23 1 13.2435 -6.8171 0.5749 24 6 11.6730 -7.4348 -0.6614 25 6 11.9373 -8.6800 -1.2220 26 6 11.0201 -9.2615 -2.0689 27 6 9.8269 -8.6156 -2.3726 28 9 8.9391 -9.2009 -3.2058 29 6 9.5454 -7.3815 -1.8281 30 6 10.4641 -6.7828 -0.9629 31 6 6.1136 -3.8129 -0.0213 32 1 -0.4851 0.8400 -0.0004 33 1 3.8648 -0.3632 -0.0056 34 1 6.3947 -0.7741 1.2148 35 1 5.3893 -1.9505 2.1178 36 1 8.8220 -4.8550 1.7997 37 1 7.9156 -5.7691 0.5705 38 1 8.9610 -4.4034 -1.2159 39 1 9.8673 -3.4893 0.0133 40 1 11.9737 -4.6686 1.0839 41 1 12.8613 -9.1904 -0.9936 42 1 11.2297 -10.2287 -2.5014 43 1 8.6177 -6.8822 -2.0653 44 1 5.3815 -4.4990 0.4046 45 1 6.3688 -4.1153 -1.0370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013944848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:30 Heat of formation + Delta-G solvation = -78.400535 kcal Electronic energy + Delta-G solvation = -30571.254679 eV Core-core repulsion = 26081.488657 eV Total energy + Delta-G solvation = -4489.766022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.77055 -42.25758 -41.70131 -39.99287 -37.63751 -37.37721 -36.05493 -35.47805 -33.80925 -33.06449 -31.22698 -29.88851 -28.92970 -28.58652 -27.11453 -24.75827 -24.03390 -23.58588 -22.89851 -21.16770 -20.57250 -20.34087 -20.06388 -18.96187 -18.29960 -18.11191 -17.76550 -17.22386 -17.02304 -16.64586 -16.53215 -16.21394 -16.08168 -15.67070 -15.37828 -15.18437 -15.13943 -14.74176 -14.66512 -14.61533 -14.41004 -14.18669 -13.97596 -13.87900 -13.72645 -13.42170 -13.32135 -13.10808 -12.96969 -12.44425 -12.40387 -12.28871 -12.25243 -12.00738 -11.95712 -11.66581 -11.51315 -11.00603 -10.70736 -10.42632 -10.25382 -9.76114 -9.14341 -8.61038 -8.40380 -6.01725 0.00535 0.40562 1.33675 1.37265 1.46915 1.48011 1.65263 1.87306 2.00709 2.21726 2.24696 2.71373 2.79335 3.13732 3.33015 3.34025 3.52314 3.67943 3.83668 3.93487 3.98050 4.05834 4.14822 4.18619 4.32546 4.37568 4.39343 4.50293 4.59208 4.60751 4.67090 4.78257 4.81275 4.86796 4.87730 5.02566 5.10104 5.14808 5.25120 5.33827 5.53532 5.56282 5.68193 5.73156 5.95648 6.06128 6.10298 6.56514 6.67897 6.86795 7.10811 7.38021 7.91461 8.76525 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.002013 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.360460 B =13903.756472 C =15270.274721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.227 1.227 7 C -0.328 4.328 8 H 0.059 0.941 9 N -0.581 5.581 10 C 0.463 3.537 11 O -0.618 6.618 12 C -0.102 4.102 13 H 0.144 0.856 14 C -0.144 4.144 15 C 0.522 3.478 16 O -0.567 6.567 17 N -0.610 5.610 18 C 0.132 3.868 19 C -0.048 4.048 20 C -0.193 4.193 21 C 0.081 3.919 22 N -0.579 5.579 23 H 0.435 0.565 24 C 0.075 3.925 25 C -0.090 4.090 26 C -0.139 4.139 27 C 0.050 3.950 28 F -0.155 7.155 29 C -0.122 4.122 30 C -0.095 4.095 31 C 0.122 3.878 32 H 0.279 0.721 33 H 0.391 0.609 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.200 0.800 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.132 0.868 44 H 0.070 0.930 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.008 -10.685 -1.850 33.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.212 4.212 3 Si 0.778 3.222 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.150 1.150 7 C -0.457 4.457 8 H 0.078 0.922 9 N -0.220 5.220 10 C 0.250 3.750 11 O -0.503 6.503 12 C -0.124 4.124 13 H 0.162 0.838 14 C -0.184 4.184 15 C 0.311 3.689 16 O -0.447 6.447 17 N -0.342 5.342 18 C 0.011 3.989 19 C -0.087 4.087 20 C -0.200 4.200 21 C -0.046 4.046 22 N -0.183 5.183 23 H 0.275 0.725 24 C -0.033 4.033 25 C -0.111 4.111 26 C -0.158 4.158 27 C 0.030 3.970 28 F -0.134 7.134 29 C -0.142 4.142 30 C -0.100 4.100 31 C -0.001 4.001 32 H 0.089 0.911 33 H 0.227 0.773 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.217 0.783 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.150 0.850 44 H 0.088 0.912 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 32.011 -11.240 -1.403 33.956 hybrid contribution -0.571 0.589 -0.060 0.823 sum 31.440 -10.651 -1.462 33.227 Atomic orbital electron populations 1.69795 1.08161 1.29286 1.49869 1.26096 0.96419 1.02693 0.95973 0.85462 0.79775 0.76918 0.80079 1.18010 1.20329 1.15008 1.19021 0.81358 0.95001 1.50329 0.92240 1.41992 1.05837 1.07570 1.66628 1.20286 0.89750 0.83370 0.81545 1.90566 1.71127 1.32663 1.55988 1.22072 0.90840 0.98813 1.00698 0.83826 1.22400 0.95966 1.02452 0.97630 1.20914 0.86727 0.82149 0.79104 1.90669 1.41449 1.74793 1.37806 1.48405 1.22238 1.22256 1.41296 1.21494 0.87367 0.89785 1.00293 1.20114 0.93131 0.96091 0.99319 1.20080 0.98340 0.96157 1.05415 1.22152 0.91720 0.90691 1.00083 1.41756 1.19998 1.15882 1.40625 0.72499 1.18463 0.93198 0.94484 0.97154 1.20158 1.01031 0.92278 0.97602 1.21023 0.92385 1.01811 1.00612 1.17631 0.89982 0.93749 0.95676 1.91458 1.67884 1.84083 1.69954 1.20528 1.00667 0.94494 0.98501 1.19000 0.94729 0.96004 1.00266 1.21937 0.85405 0.95921 0.96822 0.91131 0.77315 0.84960 0.88411 0.90565 0.89842 0.90745 0.90713 0.78328 0.82031 0.82584 0.85024 0.91172 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.76 13.96 21.66 0.30 -54.45 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.96 37.20 27.73 68.60 1.90 39.10 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 7 C -0.33 -18.35 10.16 84.04 0.85 -17.49 16 8 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 9 N -0.58 -25.52 5.09 -306.98 -1.56 -27.08 16 10 C 0.46 19.07 7.01 87.66 0.61 19.68 16 11 O -0.62 -31.67 15.08 -3.07 -0.05 -31.71 16 12 C -0.10 -2.79 3.54 -10.48 -0.04 -2.83 16 13 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 14 C -0.14 -3.71 6.41 30.59 0.20 -3.51 16 15 C 0.52 14.50 8.02 87.90 0.71 15.20 16 16 O -0.57 -18.79 17.59 -3.02 -0.05 -18.85 16 17 N -0.61 -14.72 2.93 -817.97 -2.40 -17.12 16 18 C 0.13 2.67 5.92 86.38 0.51 3.18 16 19 C -0.05 -0.81 6.07 29.85 0.18 -0.63 16 20 C -0.19 -3.12 5.57 -18.63 -0.10 -3.23 16 21 C 0.08 0.91 11.73 83.00 0.97 1.88 16 22 N -0.58 -5.27 6.08 -187.59 -1.14 -6.41 16 23 H 0.43 0.95 8.96 -92.71 -0.83 0.12 16 24 C 0.07 1.06 7.27 38.99 0.28 1.35 16 25 C -0.09 -1.04 10.06 22.35 0.22 -0.81 16 26 C -0.14 -1.99 9.99 22.34 0.22 -1.77 16 27 C 0.05 0.99 7.29 22.36 0.16 1.15 16 28 F -0.15 -3.54 17.26 44.97 0.78 -2.77 16 29 C -0.12 -2.47 10.07 22.51 0.23 -2.24 16 30 C -0.09 -1.75 6.35 -20.20 -0.13 -1.87 16 31 C 0.12 3.14 6.71 86.83 0.58 3.72 16 32 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.39 14.13 5.77 -92.71 -0.53 13.59 16 34 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.10 2.83 7.89 -2.38 -0.02 2.81 16 36 H 0.08 1.64 7.92 -2.39 -0.02 1.62 16 37 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.07 2.21 6.96 -2.39 -0.02 2.20 16 45 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -80.22 388.41 3.36 -76.87 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.36 Total: 30.85 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.94 Total: 11.57 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.80 Total: -105.06 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.10 Total: -50.56 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.90 Total: 39.10 kcal Total: -80.22 3.36 -76.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013944848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.535 kcal (2) G-P(sol) polarization free energy of solvation -80.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds