Wall clock time and date at job start Tue Mar 31 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86792 * 120.00293 * 2 1 4 4 H 1.48497 * 109.47226 * 240.00140 * 3 2 1 5 5 H 1.48504 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47138 * 119.99975 * 3 2 1 7 7 C 1.38952 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00211 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00203 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00227 * 179.97438 * 10 9 7 13 13 H 1.09008 * 110.85295 * 62.33604 * 12 10 9 14 14 C 1.54622 * 110.97102 * 298.54842 * 12 10 9 15 15 C 1.51279 * 104.19706 * 217.08393 * 14 12 10 16 16 O 1.21278 * 124.94293 * 196.27406 * 15 14 12 17 17 N 1.34421 * 110.11269 * 16.24804 * 15 14 12 18 18 C 1.46505 * 124.34606 * 180.41038 * 17 15 14 19 19 C 1.52997 * 109.47212 * 90.02582 * 18 17 15 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 17 21 21 C 1.34237 * 126.49627 * 264.69227 * 20 19 18 22 22 N 1.36815 * 109.93303 * 179.83108 * 21 20 19 23 23 H 0.97000 * 125.07105 * 180.20496 * 22 21 20 24 24 C 1.37816 * 109.86094 * 0.43950 * 22 21 20 25 25 C 1.39093 * 133.39533 * 179.73584 * 24 22 21 26 26 C 1.37721 * 119.95066 * 180.02562 * 25 24 22 27 27 C 1.39027 * 120.65028 * 0.02562 * 26 25 24 28 28 F 1.35105 * 119.83647 * 180.02562 * 27 26 25 29 29 C 1.37798 * 120.33280 * 359.97438 * 27 26 25 30 30 C 1.39668 * 119.63007 * 0.02562 * 29 27 26 31 31 C 1.46760 * 111.30541 * 0.67404 * 17 15 14 32 32 H 0.97000 * 120.00101 * 359.97438 * 1 2 3 33 33 H 0.97000 * 119.99391 * 359.97438 * 9 7 2 34 34 H 1.09003 * 110.48881 * 98.39708 * 14 12 10 35 35 H 1.09008 * 110.59850 * 335.81356 * 14 12 10 36 36 H 1.09002 * 109.47068 * 210.02643 * 18 17 15 37 37 H 1.09001 * 109.47372 * 330.02730 * 18 17 15 38 38 H 1.09002 * 109.47153 * 300.00008 * 19 18 17 39 39 H 1.08998 * 109.47533 * 59.99637 * 19 18 17 40 40 H 1.08003 * 125.03618 * 359.97411 * 21 20 19 41 41 H 1.07995 * 120.02554 * 359.97438 * 25 24 22 42 42 H 1.07998 * 119.67490 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.18585 * 179.97438 * 29 27 26 44 44 H 1.09001 * 110.24370 * 101.71244 * 31 17 15 45 45 H 1.08993 * 110.24973 * 223.72129 * 31 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0887 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9970 -3.5579 -0.0026 11 8 3.2099 -3.5580 -0.0031 12 6 1.2435 -4.8630 -0.0032 13 1 0.6395 -4.9620 -0.9053 14 6 0.3697 -4.9981 1.2653 15 6 0.4599 -6.4651 1.6234 16 8 -0.2921 -7.0431 2.3793 17 7 1.4943 -7.0349 0.9814 18 6 1.8611 -8.4486 1.0965 19 6 1.1259 -9.2552 0.0241 20 6 1.5036 -10.7093 0.1421 21 6 2.4618 -11.3440 -0.5514 22 7 2.5190 -12.6575 -0.1729 23 1 3.1350 -13.3149 -0.5326 24 6 1.5675 -12.9087 0.7919 25 6 1.2016 -14.0490 1.4993 26 6 0.1834 -13.9871 2.4245 27 6 -0.4875 -12.7926 2.6612 28 9 -1.4837 -12.7504 3.5729 29 6 -0.1409 -11.6512 1.9713 30 6 0.8899 -11.6995 1.0301 31 6 2.2129 -6.0576 0.1553 32 1 -0.4850 0.8400 0.0004 33 1 0.3533 -2.3906 -0.0016 34 1 -0.6620 -4.7207 1.0492 35 1 0.7680 -4.3832 2.0725 36 1 2.9369 -8.5572 0.9590 37 1 1.5818 -8.8173 2.0835 38 1 0.0501 -9.1466 0.1616 39 1 1.4051 -8.8866 -0.9629 40 1 3.0954 -10.8853 -1.2961 41 1 1.7151 -14.9825 1.3226 42 1 -0.0973 -14.8753 2.9709 43 1 -0.6639 -10.7247 2.1567 44 1 3.1277 -5.7406 0.6561 45 1 2.4447 -6.4858 -0.8198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013944849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:35 Heat of formation + Delta-G solvation = -63.242676 kcal Electronic energy + Delta-G solvation = -30469.662717 eV Core-core repulsion = 25980.553989 eV Total energy + Delta-G solvation = -4489.108728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.93088 -41.62472 -40.34859 -38.15480 -36.97644 -36.07111 -34.56948 -34.00165 -32.27434 -31.26647 -30.31614 -29.24258 -27.94707 -27.33725 -25.32234 -23.76298 -23.36770 -22.33385 -22.21768 -19.77991 -19.28001 -19.02875 -18.33034 -17.95577 -17.49661 -16.74868 -16.57087 -16.47737 -15.71984 -15.59040 -15.37986 -15.00123 -14.69501 -14.38365 -14.33615 -14.07004 -13.99326 -13.93268 -13.62454 -13.33436 -13.16948 -12.97385 -12.79348 -12.71198 -12.48172 -12.23111 -12.08673 -11.60477 -11.58956 -11.34765 -11.17532 -11.05509 -10.96141 -10.83517 -10.49604 -10.27600 -10.01701 -9.64544 -9.58847 -8.68360 -8.50501 -8.44859 -8.07300 -7.93859 -6.50031 -3.91655 0.65763 1.10175 2.25654 2.71011 2.81298 3.13280 3.15188 3.22465 3.26307 3.41071 3.73598 4.02943 4.09372 4.29281 4.46880 4.51919 4.62801 4.69282 4.81773 4.86530 4.94527 5.02153 5.15304 5.18756 5.24359 5.29871 5.36506 5.43599 5.48870 5.49945 5.64148 5.76485 5.80948 5.87162 5.91970 5.97929 6.03734 6.09292 6.25220 6.34228 6.35805 6.40263 6.69016 6.75973 7.11979 7.26204 7.47392 7.95174 8.36623 8.48610 9.07299 9.42870 9.92091 10.66844 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.001782 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.783765 B =15705.594910 C =16684.082769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.104 0.896 9 N -0.551 5.551 10 C 0.446 3.554 11 O -0.594 6.594 12 C -0.111 4.111 13 H 0.102 0.898 14 C -0.146 4.146 15 C 0.521 3.479 16 O -0.538 6.538 17 N -0.621 5.621 18 C 0.133 3.867 19 C -0.062 4.062 20 C -0.162 4.162 21 C 0.063 3.937 22 N -0.594 5.594 23 H 0.417 0.583 24 C 0.085 3.915 25 C -0.103 4.103 26 C -0.131 4.131 27 C 0.069 3.931 28 F -0.142 7.142 29 C -0.101 4.101 30 C -0.076 4.076 31 C 0.122 3.878 32 H 0.274 0.726 33 H 0.394 0.606 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.175 0.825 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.091 0.909 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -26.715 -1.676 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.186 5.186 10 C 0.231 3.769 11 O -0.480 6.480 12 C -0.134 4.134 13 H 0.121 0.879 14 C -0.186 4.186 15 C 0.309 3.691 16 O -0.416 6.416 17 N -0.355 5.355 18 C 0.011 3.989 19 C -0.101 4.101 20 C -0.170 4.170 21 C -0.064 4.064 22 N -0.196 5.196 23 H 0.255 0.745 24 C -0.022 4.022 25 C -0.123 4.123 26 C -0.151 4.151 27 C 0.049 3.951 28 F -0.121 7.121 29 C -0.120 4.120 30 C -0.080 4.080 31 C -0.001 4.001 32 H 0.084 0.916 33 H 0.228 0.772 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.192 0.808 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.109 0.891 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.553 -26.962 -1.305 27.114 hybrid contribution -0.061 0.556 -0.141 0.577 sum 2.492 -26.406 -1.446 26.563 Atomic orbital electron populations 1.69600 1.05965 1.28556 1.49489 1.25300 0.95647 0.99866 0.96902 0.85900 0.78795 0.80313 0.79127 1.19831 1.20913 1.19815 1.19682 0.93413 0.82138 1.48227 0.87795 1.41851 1.09364 1.04523 1.62833 1.19348 0.87913 0.84337 0.85264 1.90525 1.13669 1.86938 1.56843 1.22127 0.97170 0.95146 0.98933 0.87944 1.22379 1.02797 0.94292 0.99182 1.20955 0.79589 0.89472 0.79038 1.90690 1.44542 1.69675 1.36670 1.48393 1.30806 1.09059 1.47210 1.21324 0.99267 0.78589 0.99723 1.20320 1.01442 0.88616 0.99730 1.20098 1.00538 0.95143 1.01232 1.21722 1.00451 0.83042 1.01139 1.41721 1.32253 1.10354 1.35308 0.74548 1.18247 0.93558 0.95694 0.94663 1.19789 0.98995 0.96116 0.97427 1.20753 0.97151 0.97175 1.00049 1.17313 0.90354 0.94749 0.92685 1.91497 1.58803 1.97170 1.64597 1.20550 0.97547 0.98073 0.95830 1.18799 0.97507 0.92917 0.98824 1.22001 0.95636 0.86958 0.95496 0.91599 0.77192 0.87597 0.87275 0.90338 0.90119 0.90582 0.90598 0.80825 0.85313 0.84529 0.84332 0.89052 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.46 13.05 55.50 0.72 -22.73 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.26 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.08 9.68 -14.93 -0.14 -8.22 16 8 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 9 N -0.55 -13.06 5.24 -10.96 -0.06 -13.11 16 10 C 0.45 9.60 7.03 -10.99 -0.08 9.52 16 11 O -0.59 -14.74 15.14 5.55 0.08 -14.65 16 12 C -0.11 -1.76 3.56 -90.04 -0.32 -2.09 16 13 H 0.10 1.42 8.14 -51.92 -0.42 1.00 16 14 C -0.15 -2.27 6.36 -26.75 -0.17 -2.44 16 15 C 0.52 8.41 8.02 -10.86 -0.09 8.32 16 16 O -0.54 -10.26 17.59 5.56 0.10 -10.16 16 17 N -0.62 -8.45 2.93 -172.30 -0.51 -8.96 16 18 C 0.13 1.51 5.92 -4.04 -0.02 1.48 16 19 C -0.06 -0.61 6.07 -27.89 -0.17 -0.78 16 20 C -0.16 -1.52 5.57 -102.71 -0.57 -2.09 16 21 C 0.06 0.42 11.73 -16.74 -0.20 0.23 16 22 N -0.59 -3.67 6.08 -10.64 -0.06 -3.73 16 23 H 0.42 1.23 8.96 -40.82 -0.37 0.86 16 24 C 0.09 0.74 7.27 -83.95 -0.61 0.13 16 25 C -0.10 -0.77 10.06 -39.45 -0.40 -1.17 16 26 C -0.13 -1.12 9.99 -39.48 -0.39 -1.52 16 27 C 0.07 0.76 7.29 -39.45 -0.29 0.47 16 28 F -0.14 -1.72 17.26 2.25 0.04 -1.68 16 29 C -0.10 -1.16 10.07 -39.21 -0.40 -1.55 16 30 C -0.08 -0.80 6.35 -105.14 -0.67 -1.47 16 31 C 0.12 1.70 6.65 -3.03 -0.02 1.68 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 34 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.11 1.82 7.90 -51.92 -0.41 1.41 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.04 7.92 -51.93 -0.41 0.62 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.09 1.45 7.07 -51.93 -0.37 1.09 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -33.12 391.58 -9.05 -42.17 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.62 Total: 10.62 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -4.63 Total: 1.07 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.10 Total: -48.53 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.18 Total: -24.81 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.12 -9.05 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013944849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.076 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds