Wall clock time and date at job start Tue Mar 31 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48502 * 109.47122 * 239.99668 * 3 2 1 5 5 H 1.48502 * 109.46888 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47394 * 119.99431 * 3 2 1 7 7 C 1.37876 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.35641 * 126.08679 * 270.31382 * 10 9 7 12 12 O 1.35731 * 126.14928 * 359.97438 * 11 10 9 13 13 N 1.36286 * 107.69486 * 180.16100 * 11 10 9 14 14 C 1.38898 * 126.00595 * 179.83384 * 13 11 10 15 15 N 1.30782 * 125.04731 * 359.69802 * 14 13 11 16 16 C 1.35788 * 109.62943 * 179.97438 * 15 14 13 17 17 C 1.39762 * 133.43536 * 179.97438 * 16 15 14 18 18 C 1.37642 * 119.77096 * 180.02562 * 17 16 15 19 19 C 1.38739 * 120.51394 * 0.02562 * 18 17 16 20 20 C 1.37904 * 120.45281 * 359.97438 * 19 18 17 21 21 C 1.38735 * 119.84305 * 0.02562 * 20 19 18 22 22 N 1.36495 * 125.04741 * 179.97438 * 14 13 11 23 23 H 0.97004 * 126.36816 * 0.05841 * 22 14 13 24 24 N 1.40059 * 107.98231 * 359.57286 * 13 11 10 25 25 C 1.31591 * 108.30039 * 0.26504 * 24 13 11 26 26 C 1.48390 * 125.90657 * 179.97438 * 25 24 13 27 27 C 1.39343 * 120.11884 * 144.74248 * 26 25 24 28 28 C 1.38022 * 119.87349 * 179.74828 * 27 26 25 29 29 C 1.38332 * 120.11881 * 0.53660 * 28 27 26 30 30 C 1.38325 * 120.24515 * 359.74127 * 29 28 27 31 31 C 1.38011 * 120.12251 * 359.97438 * 30 29 28 32 32 H 0.97006 * 119.99758 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.47031 * 60.00029 * 9 7 2 34 34 H 1.08992 * 109.47668 * 299.99972 * 9 7 2 35 35 H 0.96701 * 113.99803 * 270.21121 * 12 11 10 36 36 H 1.07997 * 120.11767 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.73800 * 180.02562 * 18 17 16 38 38 H 1.08010 * 119.77519 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.08018 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.06669 * 0.03113 * 27 26 25 41 41 H 1.07996 * 119.93970 * 180.30092 * 28 27 26 42 42 H 1.08001 * 119.87203 * 179.76561 * 29 28 27 43 43 H 1.07999 * 119.93379 * 179.97438 * 30 29 28 44 44 H 1.08004 * 120.06452 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7539 -4.2480 -1.0956 12 8 2.4898 -3.9290 -2.3882 13 7 3.5897 -5.2349 -0.6656 14 6 4.3235 -6.0934 -1.4742 15 7 4.3154 -6.0837 -2.7820 16 6 5.1439 -7.0521 -3.2505 17 6 5.5023 -7.4715 -4.5347 18 6 6.3910 -8.5109 -4.6910 19 6 6.9337 -9.1463 -3.5834 20 6 6.5907 -8.7448 -2.3095 21 6 5.6965 -7.6990 -2.1325 22 7 5.1561 -7.0759 -1.0220 23 1 5.3365 -7.2952 -0.0944 24 7 3.5832 -5.2274 0.7349 25 6 2.7694 -4.2755 1.1392 26 6 2.4708 -3.9271 2.5504 27 6 2.2510 -2.5993 2.9112 28 6 1.9685 -2.2815 4.2243 29 6 1.9143 -3.2770 5.1832 30 6 2.1374 -4.5961 4.8315 31 6 2.4149 -4.9259 3.5205 32 1 -0.4850 0.8401 -0.0004 33 1 0.6245 -2.5571 -0.8897 34 1 0.6239 -2.5568 0.8902 35 1 1.7400 -4.4085 -2.7663 36 1 5.0834 -6.9818 -5.4013 37 1 6.6679 -8.8343 -5.6835 38 1 7.6303 -9.9604 -3.7199 39 1 7.0172 -9.2434 -1.4516 40 1 2.2971 -1.8208 2.1641 41 1 1.7931 -1.2533 4.5043 42 1 1.6966 -3.0234 6.2102 43 1 2.0943 -5.3693 5.5843 44 1 2.5886 -5.9561 3.2468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014607971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:07 Heat of formation + Delta-G solvation = 144.289668 kcal Electronic energy + Delta-G solvation = -30628.656497 eV Core-core repulsion = 26513.890360 eV Total energy + Delta-G solvation = -4114.766137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.133 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.35822 -41.06364 -38.60145 -37.40004 -36.70444 -34.00956 -33.33235 -32.71870 -30.84297 -30.47520 -30.13723 -29.97367 -28.35940 -26.86028 -24.17761 -23.28312 -22.51628 -22.24868 -22.00902 -21.28186 -20.30184 -19.64126 -18.52497 -17.58753 -17.12192 -16.65683 -16.34966 -16.21758 -15.83214 -15.08821 -14.71425 -14.63409 -14.53224 -14.47083 -14.37013 -14.05467 -13.42636 -13.15451 -12.94582 -12.84028 -12.51659 -12.30131 -12.20028 -11.90024 -11.72933 -11.55617 -11.43992 -11.01467 -10.95529 -10.79231 -10.72268 -10.68492 -10.14337 -10.03575 -9.82364 -9.81926 -9.50052 -8.57461 -8.54875 -8.44339 -8.37890 -8.16493 -7.56242 -6.07834 -4.11365 0.59054 1.26294 1.36117 1.74819 1.80028 1.91297 2.80120 2.93739 3.10954 3.30683 3.35476 3.40602 3.72004 4.09063 4.22193 4.36644 4.42561 4.60757 4.80238 4.87694 5.04828 5.13450 5.19519 5.25294 5.27138 5.30534 5.39637 5.52218 5.64815 5.81212 5.83191 5.86967 5.99308 6.13280 6.15749 6.28230 6.32153 6.33712 6.51422 6.56921 6.65534 6.74645 6.89950 7.00008 7.01454 7.25404 7.39362 7.43621 7.49393 7.63712 7.87519 7.93174 8.01622 8.27799 8.92478 9.51711 11.00811 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003080 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.997319 B = 9087.642387 C =11317.231342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.089 3.911 10 C -0.158 4.158 11 C 0.272 3.728 12 O -0.432 6.432 13 N -0.336 5.336 14 C 0.546 3.454 15 N -0.493 5.493 16 C 0.070 3.930 17 C -0.067 4.067 18 C -0.125 4.125 19 C -0.109 4.109 20 C -0.106 4.106 21 C 0.049 3.951 22 N -0.595 5.595 23 H 0.429 0.571 24 N -0.288 5.288 25 C 0.159 3.841 26 C -0.021 4.021 27 C -0.074 4.074 28 C -0.124 4.124 29 C -0.113 4.113 30 C -0.138 4.138 31 C -0.094 4.094 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.038 0.962 35 H 0.391 0.609 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.169 0.831 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 -16.429 0.930 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.051 3.949 10 C -0.169 4.169 11 C 0.111 3.889 12 O -0.233 6.233 13 N -0.129 5.129 14 C 0.192 3.808 15 N -0.220 5.220 16 C -0.049 4.049 17 C -0.087 4.087 18 C -0.146 4.146 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.061 4.061 22 N -0.211 5.211 23 H 0.269 0.731 24 N -0.111 5.111 25 C -0.007 4.007 26 C -0.023 4.023 27 C -0.093 4.093 28 C -0.143 4.143 29 C -0.132 4.132 30 C -0.156 4.156 31 C -0.113 4.113 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.248 0.752 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.186 0.814 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.779 -16.280 0.547 18.504 hybrid contribution 0.168 0.540 0.569 0.802 sum 8.947 -15.739 1.116 18.139 Atomic orbital electron populations 1.69933 1.05926 1.27026 1.49733 1.24950 0.94806 0.98992 0.95020 0.86694 0.79693 0.83053 0.78926 1.20132 1.21195 1.20025 1.20962 0.92963 0.89752 1.51250 0.92605 1.17794 0.91103 0.87395 0.98619 1.20950 1.04676 1.02890 0.88343 1.18548 0.94081 0.89858 0.86393 1.84969 1.54198 1.63496 1.20592 1.45232 1.36686 1.26296 1.04683 1.18686 0.89542 0.86213 0.86355 1.70657 1.24741 1.23302 1.03296 1.18910 0.97431 0.94700 0.93858 1.20267 0.97668 0.96791 0.93998 1.20879 0.98072 0.96588 0.99014 1.20839 1.00455 1.00290 0.91269 1.19907 0.98383 0.96141 0.98260 1.18728 1.01456 0.99354 0.86547 1.42684 1.39273 1.29639 1.09482 0.73069 1.77577 1.25241 1.24120 0.84160 1.20686 0.93525 0.92405 0.94088 1.17747 1.02863 0.93985 0.87753 1.22217 0.92957 0.96658 0.97503 1.21164 1.00568 0.99536 0.92988 1.21229 0.99542 0.93144 0.99246 1.20914 1.02471 0.96411 0.95771 1.21125 0.98973 0.98615 0.92629 0.92682 0.95089 0.94420 0.75226 0.85017 0.85221 0.85242 0.85894 0.81391 0.85702 0.86455 0.86367 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.51 -13.47 6.93 -34.44 -0.24 -13.70 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.09 2.16 4.51 -29.03 -0.13 2.03 16 10 C -0.16 -3.42 5.28 -104.54 -0.55 -3.97 16 11 C 0.27 5.59 7.88 -16.50 -0.13 5.46 16 12 O -0.43 -8.39 12.83 -18.90 -0.24 -8.63 16 13 N -0.34 -6.42 3.78 -13.36 -0.05 -6.47 16 14 C 0.55 9.58 8.76 -318.90 -2.79 6.79 16 15 N -0.49 -8.75 10.46 -11.32 -0.12 -8.86 16 16 C 0.07 1.06 7.22 -84.69 -0.61 0.45 16 17 C -0.07 -0.80 10.10 -39.23 -0.40 -1.20 16 18 C -0.13 -1.15 10.01 -39.61 -0.40 -1.54 16 19 C -0.11 -0.94 10.03 -39.52 -0.40 -1.34 16 20 C -0.11 -1.07 10.06 -39.52 -0.40 -1.47 16 21 C 0.05 0.65 7.30 -83.90 -0.61 0.04 16 22 N -0.60 -8.44 6.26 -11.01 -0.07 -8.51 16 23 H 0.43 5.11 8.96 -40.82 -0.37 4.74 16 24 N -0.29 -5.39 12.50 33.43 0.42 -4.97 16 25 C 0.16 3.16 6.73 -82.78 -0.56 2.60 16 26 C -0.02 -0.39 5.75 -104.89 -0.60 -0.99 16 27 C -0.07 -1.40 8.47 -39.25 -0.33 -1.73 16 28 C -0.12 -1.98 10.03 -39.63 -0.40 -2.37 16 29 C -0.11 -1.53 10.04 -39.51 -0.40 -1.93 16 30 C -0.14 -1.84 10.03 -39.63 -0.40 -2.23 16 31 C -0.09 -1.44 9.75 -39.25 -0.38 -1.82 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.95 7.11 -51.93 -0.37 0.58 16 35 H 0.39 5.74 9.06 45.56 0.41 6.15 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.17 3.65 4.85 -52.49 -0.25 3.40 16 41 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -31.69 382.96 -12.32 -44.01 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -3.92 Total: 11.18 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -9.82 Total: -15.32 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.92 Total: -52.79 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.24 Total: -8.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.69 -12.32 -44.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014607971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.297 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds