Wall clock time and date at job start Tue Mar 31 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48502 * 109.47122 * 239.99668 * 3 2 1 5 5 H 1.48502 * 109.46888 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47394 * 119.99431 * 3 2 1 7 7 C 1.37876 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.35641 * 126.08679 * 270.31382 * 10 9 7 12 12 O 1.35731 * 126.14928 * 359.97438 * 11 10 9 13 13 N 1.36286 * 107.69486 * 180.16100 * 11 10 9 14 14 C 1.38898 * 126.00595 * 179.83384 * 13 11 10 15 15 N 1.30782 * 125.04731 * 359.69802 * 14 13 11 16 16 C 1.35788 * 109.62943 * 179.97438 * 15 14 13 17 17 C 1.39762 * 133.43536 * 179.97438 * 16 15 14 18 18 C 1.37642 * 119.77096 * 180.02562 * 17 16 15 19 19 C 1.38739 * 120.51394 * 0.02562 * 18 17 16 20 20 C 1.37904 * 120.45281 * 359.97438 * 19 18 17 21 21 C 1.38735 * 119.84305 * 0.02562 * 20 19 18 22 22 N 1.36495 * 125.04741 * 179.97438 * 14 13 11 23 23 H 0.97004 * 126.36816 * 0.05841 * 22 14 13 24 24 N 1.40059 * 107.98231 * 359.57286 * 13 11 10 25 25 C 1.31591 * 108.30039 * 0.26504 * 24 13 11 26 26 C 1.48390 * 125.90657 * 179.97438 * 25 24 13 27 27 C 1.39343 * 120.11884 * 144.74248 * 26 25 24 28 28 C 1.38022 * 119.87349 * 179.74828 * 27 26 25 29 29 C 1.38332 * 120.11881 * 0.53660 * 28 27 26 30 30 C 1.38325 * 120.24515 * 359.74127 * 29 28 27 31 31 C 1.38011 * 120.12251 * 359.97438 * 30 29 28 32 32 H 0.97006 * 119.99758 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.47031 * 60.00029 * 9 7 2 34 34 H 1.08992 * 109.47668 * 299.99972 * 9 7 2 35 35 H 0.96701 * 113.99803 * 270.21121 * 12 11 10 36 36 H 1.07997 * 120.11767 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.73800 * 180.02562 * 18 17 16 38 38 H 1.08010 * 119.77519 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.08018 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.06669 * 0.03113 * 27 26 25 41 41 H 1.07996 * 119.93970 * 180.30092 * 28 27 26 42 42 H 1.08001 * 119.87203 * 179.76561 * 29 28 27 43 43 H 1.07999 * 119.93379 * 179.97438 * 30 29 28 44 44 H 1.08004 * 120.06452 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7539 -4.2480 -1.0956 12 8 2.4898 -3.9290 -2.3882 13 7 3.5897 -5.2349 -0.6656 14 6 4.3235 -6.0934 -1.4742 15 7 4.3154 -6.0837 -2.7820 16 6 5.1439 -7.0521 -3.2505 17 6 5.5023 -7.4715 -4.5347 18 6 6.3910 -8.5109 -4.6910 19 6 6.9337 -9.1463 -3.5834 20 6 6.5907 -8.7448 -2.3095 21 6 5.6965 -7.6990 -2.1325 22 7 5.1561 -7.0759 -1.0220 23 1 5.3365 -7.2952 -0.0944 24 7 3.5832 -5.2274 0.7349 25 6 2.7694 -4.2755 1.1392 26 6 2.4708 -3.9271 2.5504 27 6 2.2510 -2.5993 2.9112 28 6 1.9685 -2.2815 4.2243 29 6 1.9143 -3.2770 5.1832 30 6 2.1374 -4.5961 4.8315 31 6 2.4149 -4.9259 3.5205 32 1 -0.4850 0.8401 -0.0004 33 1 0.6245 -2.5571 -0.8897 34 1 0.6239 -2.5568 0.8902 35 1 1.7400 -4.4085 -2.7663 36 1 5.0834 -6.9818 -5.4013 37 1 6.6679 -8.8343 -5.6835 38 1 7.6303 -9.9604 -3.7199 39 1 7.0172 -9.2434 -1.4516 40 1 2.2971 -1.8208 2.1641 41 1 1.7931 -1.2533 4.5043 42 1 1.6966 -3.0234 6.2102 43 1 2.0943 -5.3693 5.5843 44 1 2.5886 -5.9561 3.2468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014607971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:06 Heat of formation + Delta-G solvation = 126.740281 kcal Electronic energy + Delta-G solvation = -30629.417495 eV Core-core repulsion = 26513.890360 eV Total energy + Delta-G solvation = -4115.527135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.133 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.51669 -42.47861 -39.82973 -38.34504 -38.21313 -35.75814 -34.49317 -34.29152 -32.40455 -31.67939 -31.39982 -31.00018 -29.49450 -28.61172 -25.60353 -24.94788 -23.52082 -23.41773 -23.09323 -22.58502 -21.79543 -21.00940 -19.81241 -18.80765 -18.50783 -18.13577 -17.82377 -17.47718 -17.12940 -16.56158 -16.29971 -16.03121 -15.69465 -15.54941 -15.34475 -14.90015 -14.85624 -14.60141 -14.38868 -14.24739 -14.19271 -13.76016 -13.33038 -13.21127 -12.94319 -12.89908 -12.66338 -12.60979 -12.55296 -12.23371 -12.09356 -11.97204 -11.73539 -11.62841 -11.50297 -11.20178 -11.11125 -10.54727 -9.77195 -9.73461 -9.61957 -9.34319 -8.87348 -8.14764 -6.24914 -0.57687 0.11988 0.39865 0.44317 0.57719 0.62793 1.40179 1.42335 1.49122 1.58648 1.71305 1.72558 2.43457 2.72173 2.82518 2.97852 3.14652 3.23981 3.35000 3.77215 3.90930 4.11594 4.13031 4.15745 4.23793 4.28632 4.36345 4.42673 4.45866 4.55657 4.67875 4.74245 4.80180 4.98559 5.05986 5.12275 5.21104 5.29661 5.37945 5.43910 5.48944 5.52676 5.58854 5.59797 5.71263 5.74161 5.77843 5.86928 6.04550 6.15687 6.21669 6.26396 6.57186 6.65828 6.81925 7.40525 8.93153 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003080 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.997319 B = 9087.642387 C =11317.231342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.041 0.959 9 C 0.109 3.891 10 C -0.191 4.191 11 C 0.273 3.727 12 O -0.445 6.445 13 N -0.334 5.334 14 C 0.509 3.491 15 N -0.515 5.515 16 C 0.026 3.974 17 C -0.084 4.084 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.110 4.110 21 C 0.042 3.958 22 N -0.583 5.583 23 H 0.437 0.563 24 N -0.278 5.278 25 C 0.154 3.846 26 C -0.045 4.045 27 C -0.105 4.105 28 C -0.134 4.134 29 C -0.100 4.100 30 C -0.125 4.125 31 C -0.095 4.095 32 H 0.266 0.734 33 H 0.005 0.995 34 H 0.021 0.979 35 H 0.409 0.591 36 H 0.135 0.865 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 -19.306 1.969 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.059 0.941 9 C 0.071 3.929 10 C -0.202 4.202 11 C 0.111 3.889 12 O -0.248 6.248 13 N -0.126 5.126 14 C 0.155 3.845 15 N -0.242 5.242 16 C -0.092 4.092 17 C -0.104 4.104 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.131 4.131 21 C -0.067 4.067 22 N -0.199 5.199 23 H 0.279 0.721 24 N -0.101 5.101 25 C -0.012 4.012 26 C -0.047 4.047 27 C -0.124 4.124 28 C -0.152 4.152 29 C -0.119 4.119 30 C -0.142 4.142 31 C -0.114 4.114 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.039 0.961 35 H 0.268 0.732 36 H 0.153 0.847 37 H 0.184 0.816 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.178 0.822 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.193 -19.197 1.581 22.278 hybrid contribution -0.436 1.200 0.101 1.281 sum 10.757 -17.997 1.682 21.034 Atomic orbital electron populations 1.70030 1.07131 1.27821 1.50785 1.25628 0.95543 1.01952 0.94708 0.85787 0.78655 0.79481 0.78926 1.20535 1.20261 1.18939 1.21071 0.92281 0.91085 1.50791 0.94089 1.17369 0.91047 0.88121 0.96387 1.20679 1.06004 1.03471 0.90013 1.18519 0.94061 0.90033 0.86308 1.84886 1.55256 1.64312 1.20396 1.45156 1.36484 1.26158 1.04787 1.18614 0.91610 0.87825 0.86476 1.70505 1.25479 1.24448 1.03809 1.19394 0.98621 0.95413 0.95770 1.20571 0.98799 0.98051 0.93004 1.21368 0.95960 0.94687 1.01173 1.21435 0.99326 1.00026 0.90154 1.20384 0.97386 0.95050 1.00261 1.19160 1.02015 1.00084 0.85470 1.42582 1.38427 1.28699 1.10228 0.72096 1.77495 1.24705 1.23819 0.84126 1.20901 0.93412 0.92266 0.94634 1.17855 1.04699 0.94570 0.87586 1.21958 0.95963 0.96231 0.98273 1.21341 1.00565 1.00968 0.92288 1.21645 0.97320 0.92520 1.00378 1.21392 0.99929 0.97411 0.95501 1.21338 0.98570 0.98466 0.93036 0.92522 0.97626 0.96092 0.73206 0.84737 0.81615 0.80973 0.82994 0.85216 0.84874 0.82494 0.82196 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 2 C 0.02 1.18 5.46 84.66 0.46 1.65 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.51 -28.99 6.93 25.60 0.18 -28.81 16 8 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 9 C 0.11 5.75 4.51 29.10 0.13 5.89 16 10 C -0.19 -8.94 5.28 -19.81 -0.10 -9.05 16 11 C 0.27 12.07 7.88 83.40 0.66 12.73 16 12 O -0.45 -18.67 12.83 -90.54 -1.16 -19.83 16 13 N -0.33 -13.46 3.78 -306.90 -1.16 -14.62 16 14 C 0.51 18.60 8.76 260.12 2.28 20.88 16 15 N -0.52 -19.08 10.46 -189.74 -1.98 -21.06 16 16 C 0.03 0.80 7.22 39.45 0.28 1.08 16 17 C -0.08 -1.91 10.10 22.50 0.23 -1.69 16 18 C -0.11 -1.63 10.01 22.25 0.22 -1.40 16 19 C -0.09 -1.12 10.03 22.31 0.22 -0.90 16 20 C -0.11 -1.85 10.06 22.31 0.22 -1.63 16 21 C 0.04 1.07 7.30 38.79 0.28 1.36 16 22 N -0.58 -16.62 6.26 -188.74 -1.18 -17.80 16 23 H 0.44 10.33 8.96 -92.71 -0.83 9.50 16 24 N -0.28 -10.88 12.50 -48.16 -0.60 -11.48 16 25 C 0.15 6.48 6.73 42.54 0.29 6.77 16 26 C -0.04 -1.71 5.75 -20.04 -0.12 -1.82 16 27 C -0.10 -4.18 8.47 22.48 0.19 -3.99 16 28 C -0.13 -4.25 10.03 22.24 0.22 -4.02 16 29 C -0.10 -2.44 10.04 22.31 0.22 -2.22 16 30 C -0.12 -2.94 10.03 22.24 0.22 -2.71 16 31 C -0.09 -2.82 9.75 22.48 0.22 -2.60 16 32 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.02 1.15 7.11 -2.39 -0.02 1.14 16 35 H 0.41 13.22 9.06 -74.06 -0.67 12.54 16 36 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.13 6.17 4.85 -2.91 -0.01 6.15 16 41 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -75.17 382.96 2.13 -73.04 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.41 Total: 29.22 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 6.32 Total: -10.50 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.64 Total: -118.15 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -1.16 Total: -19.83 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -75.17 2.13 -73.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014607971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.780 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds