Wall clock time and date at job start Tue Mar 31 2020 07:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46615 * 2 1 4 4 S 1.81402 * 109.46858 * 240.00256 * 2 1 3 5 5 C 1.76202 * 102.99906 * 173.10441 * 4 2 1 6 6 C 1.38959 * 120.06645 * 353.24541 * 5 4 2 7 7 C 1.38084 * 119.93487 * 179.79094 * 6 5 4 8 8 C 1.38396 * 120.06433 * 0.48387 * 7 6 5 9 9 Cl 1.73603 * 119.93258 * 179.72108 * 8 7 6 10 10 C 1.38398 * 120.13730 * 359.75127 * 8 7 6 11 11 C 1.38088 * 120.06534 * 0.02562 * 10 8 7 12 12 C 1.50690 * 109.47493 * 120.00228 * 2 1 3 13 13 O 1.21280 * 120.00599 * 99.99759 * 12 2 1 14 14 N 1.34781 * 119.99956 * 279.99967 * 12 2 1 15 15 C 1.39234 * 120.00013 * 175.13104 * 14 12 2 16 16 C 1.39481 * 119.83201 * 147.18961 * 15 14 12 17 17 C 1.36378 * 120.16951 * 179.76015 * 16 15 14 18 18 C 1.40870 * 119.82787 * 0.51553 * 17 16 15 19 19 C 1.41153 * 120.16641 * 179.71300 * 18 17 16 20 20 H 1.07991 * 120.00259 * 205.76792 * 19 18 17 21 21 C 1.39908 * 119.99601 * 25.77152 * 19 18 17 22 22 N 1.30874 * 120.00084 * 15.70961 * 21 19 18 23 23 Si 1.86795 * 119.99925 * 195.71108 * 21 19 18 24 24 H 1.48497 * 109.46951 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47319 * 120.00122 * 23 21 19 26 26 H 1.48508 * 109.47114 * 239.99781 * 23 21 19 27 27 C 1.40874 * 119.67151 * 359.74117 * 18 17 16 28 28 C 1.36373 * 119.82585 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.47157 * 295.49538 * 1 2 3 30 30 H 1.08999 * 109.46622 * 175.50089 * 1 2 3 31 31 H 1.08995 * 109.47765 * 55.50201 * 1 2 3 32 32 H 1.08006 * 120.03390 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.97084 * 180.21146 * 7 6 5 34 34 H 1.07993 * 119.96998 * 179.97438 * 10 8 7 35 35 H 1.07998 * 120.03561 * 179.97438 * 11 10 8 36 36 H 0.97006 * 119.99820 * 355.13835 * 14 12 2 37 37 H 1.08002 * 119.91724 * 0.02885 * 16 15 14 38 38 H 1.08001 * 120.08864 * 180.25622 * 17 16 15 39 39 H 0.97003 * 120.00289 * 179.97438 * 22 21 19 40 40 H 1.08001 * 120.08722 * 179.97438 * 27 18 17 41 41 H 1.07998 * 119.91364 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 3.8737 -0.5794 -1.4159 6 6 4.4084 0.2692 -0.4542 7 6 5.7721 0.4800 -0.4027 8 6 6.6052 -0.1452 -1.3141 9 17 8.3184 0.1279 -1.2509 10 6 6.0752 -0.9871 -2.2762 11 6 4.7127 -1.2054 -2.3298 12 6 2.0324 -0.7104 1.2303 13 8 2.4065 -1.8616 1.1557 14 7 2.0660 -0.0664 2.4138 15 6 2.4336 -0.7514 3.5690 16 6 3.1182 -0.0830 4.5839 17 6 3.4772 -0.7460 5.7203 18 6 3.1645 -2.1121 5.8629 19 6 3.5381 -2.8068 7.0335 20 1 3.6899 -3.8755 7.0020 21 6 3.7115 -2.1107 8.2347 22 7 3.2413 -0.8958 8.3607 23 14 4.6141 -2.9153 9.6585 24 1 5.0429 -4.2812 9.2641 25 1 5.8068 -2.1038 10.0104 26 1 3.7095 -3.0008 10.8331 27 6 2.4776 -2.7817 4.8312 28 6 2.1210 -2.1041 3.7028 29 1 -0.3633 0.4424 0.9276 30 1 -0.3632 -1.0245 -0.0806 31 1 -0.3634 0.5820 -0.8469 32 1 3.7584 0.7605 0.2548 33 1 6.1887 1.1367 0.3466 34 1 6.7276 -1.4732 -2.9863 35 1 4.2996 -1.8622 -3.0810 36 1 1.8340 0.8743 2.4609 37 1 3.3607 0.9634 4.4714 38 1 4.0036 -0.2261 6.5071 39 1 3.3612 -0.4133 9.1937 40 1 2.2348 -3.8291 4.9334 41 1 1.5947 -2.6161 2.9108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015029723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:57 Heat of formation + Delta-G solvation = 4.921287 kcal Electronic energy + Delta-G solvation = -26213.833895 eV Core-core repulsion = 22403.332900 eV Total energy + Delta-G solvation = -3810.500995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.92301 -39.20288 -37.37217 -36.56596 -34.54536 -33.63109 -32.70909 -31.27719 -30.93634 -29.62795 -28.92412 -25.69155 -24.43180 -22.96154 -22.84043 -21.72501 -20.83879 -19.71826 -18.06799 -17.46070 -17.22116 -16.94137 -16.35892 -15.68051 -15.34330 -15.13993 -15.02888 -14.39949 -14.07432 -13.98020 -13.74430 -13.67316 -13.20100 -12.87152 -12.75821 -12.52131 -12.25517 -12.12689 -11.96353 -11.89684 -11.78810 -11.50469 -11.44524 -11.17634 -11.00714 -10.96798 -10.60938 -10.45496 -10.15402 -9.79600 -9.60541 -9.50931 -9.27714 -9.24629 -8.79831 -7.60678 -7.48053 -7.04717 -6.80884 -4.35032 0.81917 1.08534 1.23798 1.96033 2.11454 2.43094 2.91483 3.03645 3.05824 3.10966 3.29085 3.36802 3.50853 3.89837 4.47519 4.53855 4.59739 4.63714 4.67620 4.87636 5.02864 5.17568 5.30975 5.32665 5.39668 5.65132 5.67899 5.77946 5.84103 5.98690 6.02897 6.12207 6.35515 6.47763 6.67583 6.83112 6.98619 7.11744 7.21889 7.53906 7.62701 7.80004 7.98336 8.17784 8.22347 8.52378 8.62298 8.83612 8.92963 10.12815 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.002738 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.900128 B =10224.964479 C =12302.966959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 H 0.110 0.890 4 S -0.047 6.047 5 C -0.075 4.075 6 C -0.114 4.114 7 C -0.084 4.084 8 C -0.043 4.043 9 Cl -0.073 7.073 10 C -0.092 4.092 11 C -0.091 4.091 12 C 0.493 3.507 13 O -0.503 6.503 14 N -0.643 5.643 15 C -0.009 4.009 16 C -0.112 4.112 17 C -0.152 4.152 18 C 0.107 3.893 19 C -0.456 4.456 20 H 0.079 0.921 21 C 0.074 3.926 22 N -0.794 5.794 23 Si 0.909 3.091 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.215 4.215 28 C -0.075 4.075 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.394 0.606 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.280 0.720 40 H 0.095 0.905 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 6.941 -17.726 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.245 4.245 3 H 0.128 0.872 4 S 0.199 5.801 5 C -0.188 4.188 6 C -0.138 4.138 7 C -0.105 4.105 8 C -0.072 4.072 9 Cl -0.044 7.044 10 C -0.112 4.112 11 C -0.115 4.115 12 C 0.275 3.725 13 O -0.378 6.378 14 N -0.286 5.286 15 C -0.101 4.101 16 C -0.132 4.132 17 C -0.172 4.172 18 C 0.104 3.896 19 C -0.486 4.486 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.420 5.420 23 Si 0.733 3.267 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.235 4.235 28 C -0.095 4.095 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.228 0.772 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.317 5.711 -18.409 19.277 hybrid contribution 1.197 1.001 1.839 2.412 sum 0.881 6.712 -16.570 17.900 Atomic orbital electron populations 1.21532 0.89015 1.04301 1.03859 1.23868 1.02273 1.03115 0.95194 0.87215 1.85221 0.97327 1.70457 1.27088 1.21874 0.98127 0.99735 0.99089 1.21053 0.95299 0.99064 0.98411 1.20937 0.92532 0.99272 0.97736 1.20873 0.84859 1.01897 0.99564 1.98367 1.12361 1.95558 1.98093 1.20937 0.94936 0.97454 0.97873 1.20665 0.92000 0.99720 0.99084 1.20154 0.80148 0.88024 0.84173 1.90773 1.45772 1.16665 1.84565 1.42905 1.66578 1.13024 1.06091 1.17117 1.11692 0.93254 0.88062 1.20201 1.00209 0.97827 0.94994 1.20914 1.03951 0.95725 0.96576 1.17680 0.88072 0.92004 0.91800 1.19618 1.40318 0.95823 0.92793 0.90291 1.25926 0.93409 0.94645 1.00335 1.69832 1.33871 1.11390 1.26912 0.86246 0.79716 0.80592 0.80120 1.18345 1.19680 1.19962 1.20680 1.07106 0.99198 0.96541 1.20258 0.99501 0.92802 0.96919 0.90019 0.90739 0.90407 0.85569 0.84593 0.84498 0.84575 0.77245 0.89253 0.85995 0.90906 0.88674 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.11 -1.28 2.43 -27.89 -0.07 -1.35 16 3 H 0.11 0.99 7.01 -51.92 -0.36 0.63 16 4 S -0.05 -0.58 20.58 -107.50 -2.21 -2.79 16 5 C -0.07 -0.98 6.02 -39.05 -0.24 -1.21 16 6 C -0.11 -1.50 8.78 -39.37 -0.35 -1.84 16 7 C -0.08 -1.06 9.82 -39.58 -0.39 -1.45 16 8 C -0.04 -0.51 6.32 -39.46 -0.25 -0.76 16 9 Cl -0.07 -0.81 28.95 -51.86 -1.50 -2.31 16 10 C -0.09 -1.01 9.82 -39.58 -0.39 -1.40 16 11 C -0.09 -1.05 9.79 -39.37 -0.39 -1.44 16 12 C 0.49 7.92 5.03 -10.99 -0.06 7.87 16 13 O -0.50 -10.32 13.62 5.56 0.08 -10.25 16 14 N -0.64 -10.50 5.31 -9.74 -0.05 -10.56 16 15 C -0.01 -0.19 6.31 -83.57 -0.53 -0.72 16 16 C -0.11 -2.48 9.89 -39.79 -0.39 -2.87 16 17 C -0.15 -3.82 8.63 -39.26 -0.34 -4.16 16 18 C 0.11 2.83 5.57 -106.80 -0.59 2.24 16 19 C -0.46 -12.00 9.04 -37.85 -0.34 -12.34 16 20 H 0.08 2.02 7.89 -52.49 -0.41 1.61 16 21 C 0.07 1.83 5.17 -17.34 -0.09 1.74 16 22 N -0.79 -19.97 10.91 55.55 0.61 -19.36 16 23 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 C -0.22 -5.41 9.74 -39.26 -0.38 -5.79 16 28 C -0.07 -1.76 8.58 -39.79 -0.34 -2.10 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 1.57 5.12 -52.48 -0.27 1.30 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.39 4.96 8.81 -40.82 -0.36 4.60 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 39 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 40 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 41 H 0.10 2.39 6.31 -52.49 -0.33 2.06 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -30.08 374.72 -11.83 -41.91 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.58 Total: 10.76 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -4.78 Total: -26.44 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: 0.55 Total: -29.92 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -2.21 Total: -2.79 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.08 -11.83 -41.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015029723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.827 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds