Wall clock time and date at job start Tue Mar 31 2020 07:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46615 * 2 1 4 4 S 1.81402 * 109.46858 * 240.00256 * 2 1 3 5 5 C 1.76202 * 102.99906 * 173.10441 * 4 2 1 6 6 C 1.38959 * 120.06645 * 353.24541 * 5 4 2 7 7 C 1.38084 * 119.93487 * 179.79094 * 6 5 4 8 8 C 1.38396 * 120.06433 * 0.48387 * 7 6 5 9 9 Cl 1.73603 * 119.93258 * 179.72108 * 8 7 6 10 10 C 1.38398 * 120.13730 * 359.75127 * 8 7 6 11 11 C 1.38088 * 120.06534 * 0.02562 * 10 8 7 12 12 C 1.50690 * 109.47493 * 120.00228 * 2 1 3 13 13 O 1.21280 * 120.00599 * 99.99759 * 12 2 1 14 14 N 1.34781 * 119.99956 * 279.99967 * 12 2 1 15 15 C 1.39234 * 120.00013 * 175.13104 * 14 12 2 16 16 C 1.39481 * 119.83201 * 147.18961 * 15 14 12 17 17 C 1.36378 * 120.16951 * 179.76015 * 16 15 14 18 18 C 1.40870 * 119.82787 * 0.51553 * 17 16 15 19 19 C 1.41153 * 120.16641 * 179.71300 * 18 17 16 20 20 H 1.07991 * 120.00259 * 205.76792 * 19 18 17 21 21 C 1.39908 * 119.99601 * 25.77152 * 19 18 17 22 22 N 1.30874 * 120.00084 * 15.70961 * 21 19 18 23 23 Si 1.86795 * 119.99925 * 195.71108 * 21 19 18 24 24 H 1.48497 * 109.46951 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47319 * 120.00122 * 23 21 19 26 26 H 1.48508 * 109.47114 * 239.99781 * 23 21 19 27 27 C 1.40874 * 119.67151 * 359.74117 * 18 17 16 28 28 C 1.36373 * 119.82585 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.47157 * 295.49538 * 1 2 3 30 30 H 1.08999 * 109.46622 * 175.50089 * 1 2 3 31 31 H 1.08995 * 109.47765 * 55.50201 * 1 2 3 32 32 H 1.08006 * 120.03390 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.97084 * 180.21146 * 7 6 5 34 34 H 1.07993 * 119.96998 * 179.97438 * 10 8 7 35 35 H 1.07998 * 120.03561 * 179.97438 * 11 10 8 36 36 H 0.97006 * 119.99820 * 355.13835 * 14 12 2 37 37 H 1.08002 * 119.91724 * 0.02885 * 16 15 14 38 38 H 1.08001 * 120.08864 * 180.25622 * 17 16 15 39 39 H 0.97003 * 120.00289 * 179.97438 * 22 21 19 40 40 H 1.08001 * 120.08722 * 179.97438 * 27 18 17 41 41 H 1.07998 * 119.91364 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 3.8737 -0.5794 -1.4159 6 6 4.4084 0.2692 -0.4542 7 6 5.7721 0.4800 -0.4027 8 6 6.6052 -0.1452 -1.3141 9 17 8.3184 0.1279 -1.2509 10 6 6.0752 -0.9871 -2.2762 11 6 4.7127 -1.2054 -2.3298 12 6 2.0324 -0.7104 1.2303 13 8 2.4065 -1.8616 1.1557 14 7 2.0660 -0.0664 2.4138 15 6 2.4336 -0.7514 3.5690 16 6 3.1182 -0.0830 4.5839 17 6 3.4772 -0.7460 5.7203 18 6 3.1645 -2.1121 5.8629 19 6 3.5381 -2.8068 7.0335 20 1 3.6899 -3.8755 7.0020 21 6 3.7115 -2.1107 8.2347 22 7 3.2413 -0.8958 8.3607 23 14 4.6141 -2.9153 9.6585 24 1 5.0429 -4.2812 9.2641 25 1 5.8068 -2.1038 10.0104 26 1 3.7095 -3.0008 10.8331 27 6 2.4776 -2.7817 4.8312 28 6 2.1210 -2.1041 3.7028 29 1 -0.3633 0.4424 0.9276 30 1 -0.3632 -1.0245 -0.0806 31 1 -0.3634 0.5820 -0.8469 32 1 3.7584 0.7605 0.2548 33 1 6.1887 1.1367 0.3466 34 1 6.7276 -1.4732 -2.9863 35 1 4.2996 -1.8622 -3.0810 36 1 1.8340 0.8743 2.4609 37 1 3.3607 0.9634 4.4714 38 1 4.0036 -0.2261 6.5071 39 1 3.3612 -0.4133 9.1937 40 1 2.2348 -3.8291 4.9334 41 1 1.5947 -2.6161 2.9108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015029723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:56 Heat of formation + Delta-G solvation = -9.437359 kcal Electronic energy + Delta-G solvation = -26214.456533 eV Core-core repulsion = 22403.332900 eV Total energy + Delta-G solvation = -3811.123633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.35648 -40.13062 -39.12414 -37.46347 -36.21916 -35.00414 -34.07368 -32.17557 -31.84678 -31.48358 -30.71377 -27.18013 -25.69840 -23.91884 -23.87167 -23.35599 -22.56383 -21.19624 -19.31007 -19.02929 -18.56324 -18.15579 -17.52988 -17.05282 -16.68571 -16.32618 -16.16377 -15.74116 -15.43198 -15.26507 -14.95867 -14.65124 -14.60190 -14.47208 -14.02022 -13.71777 -13.69391 -13.54295 -13.25702 -13.02029 -12.85640 -12.78668 -12.76748 -12.69321 -12.40197 -12.28993 -11.90136 -11.88215 -11.55921 -11.40145 -11.23728 -10.85873 -10.52316 -10.49834 -10.18672 -9.49157 -8.86659 -8.63822 -8.41632 -6.28901 -0.11653 0.17329 0.30904 0.75800 1.03801 1.12424 1.17433 1.38222 1.40938 1.53049 1.76512 2.20837 2.23298 2.44972 2.73246 3.53128 3.62881 3.71149 3.74398 3.77507 3.91775 4.14793 4.28495 4.37059 4.44007 4.47395 4.62631 4.70623 4.80112 4.90477 4.91918 5.07665 5.07874 5.10345 5.12275 5.13216 5.29136 5.40898 5.58769 5.64188 5.85735 6.00091 6.08080 6.35485 6.61680 6.66330 6.91873 6.96709 7.30696 8.32077 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.002738 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.900128 B =10224.964479 C =12302.966959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.142 0.858 4 S -0.051 6.051 5 C -0.094 4.094 6 C -0.129 4.129 7 C -0.097 4.097 8 C -0.053 4.053 9 Cl -0.068 7.068 10 C -0.090 4.090 11 C -0.097 4.097 12 C 0.496 3.504 13 O -0.548 6.548 14 N -0.636 5.636 15 C 0.013 3.987 16 C -0.110 4.110 17 C -0.170 4.170 18 C 0.076 3.924 19 C -0.497 4.497 20 H 0.070 0.930 21 C 0.037 3.963 22 N -0.822 5.822 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.262 1.262 26 H -0.264 1.264 27 C -0.235 4.235 28 C -0.086 4.086 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.417 0.583 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.289 0.711 40 H 0.091 0.909 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 8.492 -18.872 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.234 4.234 3 H 0.160 0.840 4 S 0.195 5.805 5 C -0.207 4.207 6 C -0.153 4.153 7 C -0.117 4.117 8 C -0.082 4.082 9 Cl -0.039 7.039 10 C -0.111 4.111 11 C -0.120 4.120 12 C 0.281 3.719 13 O -0.425 6.425 14 N -0.281 5.281 15 C -0.080 4.080 16 C -0.131 4.131 17 C -0.190 4.190 18 C 0.074 3.926 19 C -0.527 4.527 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.448 5.448 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.186 1.186 26 H -0.189 1.189 27 C -0.255 4.255 28 C -0.106 4.106 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.254 0.746 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.433 7.307 -19.590 20.913 hybrid contribution 1.197 0.558 1.998 2.395 sum 0.764 7.866 -17.592 19.286 Atomic orbital electron populations 1.21623 0.86926 1.04155 1.05872 1.23902 1.03697 1.03773 0.92020 0.83981 1.85237 0.97114 1.71145 1.27006 1.22110 0.98738 1.00202 0.99641 1.21177 0.95648 0.99598 0.98842 1.21117 0.92671 0.99714 0.98231 1.21044 0.85200 1.02134 0.99811 1.98366 1.11868 1.95548 1.98090 1.21237 0.95141 0.96857 0.97820 1.20972 0.92228 0.99653 0.99183 1.20955 0.78447 0.87488 0.85031 1.90765 1.47396 1.18945 1.85439 1.42806 1.66475 1.13998 1.04847 1.17134 1.09124 0.92596 0.89194 1.20476 0.99197 0.99405 0.93976 1.20916 1.04928 0.95509 0.97610 1.17974 0.89156 0.93046 0.92452 1.19795 1.42961 0.95785 0.94125 0.91156 1.26687 0.93542 0.95187 1.02339 1.69856 1.34334 1.12458 1.28119 0.85175 0.78614 0.79315 0.76722 1.18674 1.18626 1.18889 1.20798 1.07941 0.99373 0.97357 1.20359 0.99895 0.94023 0.96354 0.88785 0.92189 0.87431 0.85160 0.83879 0.82188 0.82853 0.74563 0.85744 0.87160 0.89991 0.89117 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.18 71.98 0.66 -1.26 16 2 C -0.10 -2.04 2.43 29.85 0.07 -1.97 16 3 H 0.14 1.99 7.01 -2.39 -0.02 1.98 16 4 S -0.05 -1.17 20.58 -56.49 -1.16 -2.33 16 5 C -0.09 -2.31 6.02 22.62 0.14 -2.17 16 6 C -0.13 -3.19 8.78 22.41 0.20 -2.99 16 7 C -0.10 -2.33 9.82 22.27 0.22 -2.12 16 8 C -0.05 -1.20 6.32 22.35 0.14 -1.06 16 9 Cl -0.07 -1.43 28.95 -2.72 -0.08 -1.51 16 10 C -0.09 -1.85 9.82 22.27 0.22 -1.63 16 11 C -0.10 -2.10 9.79 22.41 0.22 -1.88 16 12 C 0.50 15.05 5.03 87.65 0.44 15.49 16 13 O -0.55 -22.17 13.62 -3.03 -0.04 -22.21 16 14 N -0.64 -19.33 5.31 -303.12 -1.61 -20.94 16 15 C 0.01 0.55 6.31 38.57 0.24 0.79 16 16 C -0.11 -4.79 9.89 22.14 0.22 -4.57 16 17 C -0.17 -8.70 8.63 22.48 0.19 -8.50 16 18 C 0.08 4.19 5.57 -21.27 -0.12 4.07 16 19 C -0.50 -27.29 9.04 23.39 0.21 -27.08 16 20 H 0.07 3.80 7.89 -2.92 -0.02 3.78 16 21 C 0.04 1.88 5.17 85.24 0.44 2.32 16 22 N -0.82 -41.93 10.91 21.82 0.24 -41.69 16 23 Si 0.98 38.22 29.59 68.60 2.03 40.25 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 C -0.23 -12.28 9.74 22.48 0.22 -12.06 16 28 C -0.09 -4.11 8.58 22.13 0.19 -3.92 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.13 2.96 5.12 -2.91 -0.01 2.95 16 33 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.42 9.03 8.81 -92.70 -0.82 8.22 16 37 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.11 5.84 6.16 -2.91 -0.02 5.83 16 39 H 0.29 13.21 8.30 -92.71 -0.77 12.45 16 40 H 0.09 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.10 4.85 6.31 -2.91 -0.02 4.84 16 Total: -1.00 -67.67 374.72 3.55 -64.13 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.27 Total: 32.87 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 3.90 Total: -48.56 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -1.37 Total: -62.64 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.04 Total: -22.21 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -1.16 Total: -2.33 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -67.67 3.55 -64.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015029723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.688 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds