Wall clock time and date at job start Tue Mar 31 2020 07:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47434 * 269.99640 * 3 2 1 5 5 H 1.48497 * 109.47113 * 30.00162 * 3 2 1 6 6 H 1.48504 * 109.47003 * 149.99729 * 3 2 1 7 7 C 1.39909 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 175.56190 * 7 2 1 9 9 C 1.41146 * 120.00076 * 355.56780 * 7 2 1 10 10 C 1.40870 * 120.16497 * 214.78054 * 9 7 2 11 11 C 1.36370 * 119.83449 * 180.02562 * 10 9 7 12 12 C 1.39490 * 120.16565 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83143 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00135 * 35.29313 * 13 12 11 15 15 O 1.21283 * 120.00037 * 355.69827 * 14 13 12 16 16 C 1.50695 * 120.00404 * 175.70725 * 14 13 12 17 17 S 1.81395 * 109.47603 * 179.97438 * 16 14 13 18 18 C 1.81397 * 103.00232 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47277 * 179.97438 * 18 17 16 20 20 C 1.38241 * 119.99022 * 269.73310 * 19 18 17 21 21 C 1.38216 * 120.01292 * 179.72705 * 20 19 18 22 22 C 1.38360 * 119.98403 * 0.54289 * 21 20 19 23 23 Cl 1.73598 * 120.00967 * 179.70874 * 22 21 20 24 24 C 1.38344 * 119.97352 * 359.72697 * 22 21 20 25 25 C 1.38217 * 119.99001 * 0.02562 * 24 22 21 26 26 C 1.39482 * 120.32975 * 0.25256 * 12 11 10 27 27 C 1.36367 * 120.16979 * 359.48538 * 26 12 11 28 28 H 0.96999 * 120.00213 * 0.02562 * 1 2 3 29 29 H 1.08012 * 120.08535 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.92172 * 179.97438 * 11 10 9 31 31 H 0.96995 * 120.00208 * 215.28157 * 13 12 11 32 32 H 1.09000 * 109.47569 * 59.99358 * 16 14 13 33 33 H 1.09004 * 109.47022 * 299.99642 * 16 14 13 34 34 H 1.08997 * 109.47252 * 299.99993 * 18 17 16 35 35 H 1.09005 * 109.46842 * 60.00718 * 18 17 16 36 36 H 1.07997 * 119.99234 * 359.97438 * 20 19 18 37 37 H 1.07999 * 120.00805 * 180.27048 * 21 20 19 38 38 H 1.08001 * 120.00690 * 179.97438 * 24 22 21 39 39 H 1.07994 * 119.99246 * 179.97438 * 25 24 22 40 40 H 1.07999 * 119.90649 * 179.74741 * 26 12 11 41 41 H 1.08004 * 120.08563 * 180.25856 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0857 -1.2131 -0.0718 9 6 1.3056 -2.4321 0.0956 10 6 1.8648 -3.5180 0.7974 11 6 1.1803 -4.6943 0.8846 12 6 -0.0703 -4.8240 0.2804 13 7 -0.7628 -6.0283 0.3732 14 6 -0.6812 -6.7677 1.4971 15 8 0.0559 -6.4241 2.3969 16 6 -1.5057 -8.0214 1.6359 17 16 -1.1762 -8.7868 3.2471 18 6 -2.2420 -10.2545 3.2273 19 6 -2.0790 -11.0111 4.5204 20 6 -1.1193 -12.0005 4.6258 21 6 -0.9657 -12.6909 5.8133 22 6 -1.7802 -12.3992 6.8931 23 17 -1.5928 -13.2711 8.3825 24 6 -2.7441 -11.4128 6.7852 25 6 -2.8934 -10.7196 5.5988 26 6 -0.6278 -3.7551 -0.4212 27 6 0.0424 -2.5710 -0.5123 28 1 -0.4850 0.8400 -0.0004 29 1 2.8336 -3.4195 1.2647 30 1 1.6079 -5.5279 1.4220 31 1 -1.3041 -6.3352 -0.3708 32 1 -1.2418 -8.7197 0.8416 33 1 -2.5639 -7.7704 1.5621 34 1 -3.2816 -9.9472 3.1143 35 1 -1.9601 -10.8969 2.3930 36 1 -0.4869 -12.2314 3.7814 37 1 -0.2130 -13.4609 5.8970 38 1 -3.3805 -11.1849 7.6276 39 1 -3.6462 -9.9498 5.5144 40 1 -1.5947 -3.8644 -0.8898 41 1 -0.3925 -1.7429 -1.0524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015029805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:23 Heat of formation + Delta-G solvation = 2.788703 kcal Electronic energy + Delta-G solvation = -24477.739015 eV Core-core repulsion = 20667.145544 eV Total energy + Delta-G solvation = -3810.593471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.79201 -39.66332 -37.28248 -36.90124 -34.49751 -33.06313 -32.96901 -31.49438 -30.49666 -29.57849 -28.48794 -27.30346 -24.82841 -23.28052 -22.07053 -21.69142 -20.87857 -19.75805 -17.69644 -17.38403 -17.06764 -16.51266 -16.12218 -16.06813 -15.67758 -15.40697 -15.18429 -14.40696 -14.01622 -13.96802 -13.93988 -13.71109 -13.57222 -13.32384 -13.13427 -12.67386 -12.52925 -12.13721 -11.94119 -11.86034 -11.75514 -11.62971 -11.36968 -11.20598 -11.17080 -11.00979 -10.74621 -10.18637 -10.07913 -9.54033 -9.48964 -9.45774 -9.19843 -8.93210 -8.91997 -7.77998 -7.57861 -6.90441 -6.64190 -4.36773 0.45444 0.88526 1.48703 1.74033 2.33919 2.47812 2.96623 3.06358 3.09021 3.12931 3.26570 3.29287 3.62868 3.96725 4.19994 4.26622 4.47636 4.65138 4.67025 4.87105 4.87915 4.89103 5.07510 5.09347 5.10142 5.28676 5.52390 5.62731 5.75918 5.81030 6.06013 6.15270 6.34525 6.41479 6.69695 6.86757 7.03869 7.16661 7.26442 7.60960 7.68663 7.81819 8.03348 8.19251 8.28618 8.57502 8.66351 8.90422 8.96636 10.26912 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.001434 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.117756 B =19523.115689 C =20082.895844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.000 4.000 13 N -0.646 5.646 14 C 0.513 3.487 15 O -0.509 6.509 16 C -0.131 4.131 17 S -0.160 6.160 18 C -0.075 4.075 19 C -0.063 4.063 20 C -0.089 4.089 21 C -0.110 4.110 22 C -0.032 4.032 23 Cl -0.072 7.072 24 C -0.110 4.110 25 C -0.089 4.089 26 C -0.119 4.119 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.396 0.604 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 -23.431 6.103 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.092 4.092 13 N -0.290 5.290 14 C 0.298 3.702 15 O -0.385 6.385 16 C -0.282 4.282 17 S 0.068 5.932 18 C -0.222 4.222 19 C -0.065 4.065 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.059 4.059 23 Cl -0.043 7.043 24 C -0.128 4.128 25 C -0.109 4.109 26 C -0.139 4.139 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.230 0.770 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.109 0.891 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.905 -22.706 7.650 25.230 hybrid contribution -0.926 0.161 -1.185 1.513 sum -8.831 -22.546 6.465 25.062 Atomic orbital electron populations 1.69755 1.07306 1.28758 1.38017 1.25886 0.94949 1.01204 0.92518 0.86187 0.80269 0.80432 0.79049 1.19510 1.20282 1.18693 1.19511 0.94778 0.90217 1.44577 0.90558 1.17740 0.92285 0.92016 0.88157 1.20814 1.01270 0.94918 1.05495 1.20406 0.92732 0.97907 0.99354 1.17246 0.94276 0.85684 1.11985 1.42856 1.48960 1.21379 1.15783 1.19556 0.83483 0.84327 0.82864 1.90748 1.38223 1.69929 1.39566 1.23561 1.04411 0.99755 1.00469 1.87957 1.57790 1.26106 1.21310 1.22462 1.03142 0.98511 0.98132 1.19279 0.96664 0.96094 0.94451 1.21037 0.97174 0.95035 0.97646 1.21049 0.99244 1.00793 0.91779 1.20990 0.99421 0.97201 0.88332 1.98378 1.97035 1.75532 1.33387 1.21051 0.97876 0.95238 0.98680 1.21049 0.99252 0.98871 0.91687 1.20299 0.98325 0.93111 1.02179 1.21187 0.97313 0.95520 1.02132 0.91110 0.88522 0.87432 0.77041 0.87506 0.87409 0.88925 0.88952 0.84682 0.84691 0.84680 0.84654 0.89078 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.99 10.60 55.55 0.59 -20.40 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 18.95 29.56 -169.99 -5.03 13.92 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.24 9.02 -37.85 -0.34 -12.58 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 10 C -0.20 -5.19 9.74 -39.26 -0.38 -5.57 16 11 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 12 C 0.00 0.01 6.31 -83.57 -0.53 -0.52 16 13 N -0.65 -10.80 5.30 -9.74 -0.05 -10.85 16 14 C 0.51 8.58 7.68 -10.99 -0.08 8.50 16 15 O -0.51 -10.93 13.28 5.55 0.07 -10.86 16 16 C -0.13 -1.44 6.42 36.00 0.23 -1.21 16 17 S -0.16 -1.96 20.86 -107.50 -2.24 -4.21 16 18 C -0.07 -0.58 6.07 36.01 0.22 -0.36 16 19 C -0.06 -0.52 5.14 -104.62 -0.54 -1.06 16 20 C -0.09 -0.69 9.70 -39.59 -0.38 -1.08 16 21 C -0.11 -0.86 9.83 -39.54 -0.39 -1.25 16 22 C -0.03 -0.27 6.32 -39.50 -0.25 -0.52 16 23 Cl -0.07 -0.58 28.96 -51.86 -1.50 -2.08 16 24 C -0.11 -0.87 9.83 -39.55 -0.39 -1.26 16 25 C -0.09 -0.70 9.70 -39.59 -0.38 -1.09 16 26 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 27 C -0.14 -3.60 8.62 -39.26 -0.34 -3.93 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 29 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 30 H 0.11 2.55 6.22 -52.48 -0.33 2.22 16 31 H 0.40 4.93 8.82 -40.82 -0.36 4.57 16 32 H 0.11 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.11 0.94 8.14 -51.92 -0.42 0.51 16 34 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.09 0.56 8.08 -51.92 -0.42 0.14 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.13 3.46 6.14 -52.48 -0.32 3.14 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -31.52 381.86 -12.16 -43.68 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.78 Total: 8.64 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -4.98 Total: -23.58 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.54 Total: -31.25 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.24 Total: -4.21 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.52 -12.16 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015029805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.465 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds