Wall clock time and date at job start Tue Mar 31 2020 07:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48496 * 109.46976 * 269.99539 * 3 2 1 5 5 H 1.48493 * 109.47124 * 29.99508 * 3 2 1 6 6 H 1.48501 * 109.47250 * 149.99750 * 3 2 1 7 7 C 1.39903 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99959 * 175.56143 * 7 2 1 9 9 C 1.41151 * 120.00315 * 355.55951 * 7 2 1 10 10 C 1.40866 * 120.16916 * 214.78129 * 9 7 2 11 11 C 1.36378 * 119.83077 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16737 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83532 * 179.97438 * 12 11 10 14 14 C 1.34784 * 119.99545 * 35.28960 * 13 12 11 15 15 O 1.21277 * 120.00028 * 355.70524 * 14 13 12 16 16 C 1.50697 * 119.99494 * 175.71179 * 14 13 12 17 17 S 1.81403 * 109.46921 * 180.02562 * 16 14 13 18 18 C 1.81396 * 103.00113 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47059 * 179.97438 * 18 17 16 20 20 C 1.38230 * 120.00945 * 89.99946 * 19 18 17 21 21 C 1.38224 * 120.01478 * 179.73996 * 20 19 18 22 22 C 1.38263 * 120.02687 * 0.25914 * 21 20 19 23 23 C 1.38190 * 120.00976 * 0.02562 * 22 21 20 24 24 C 1.38334 * 120.00701 * 270.26995 * 19 18 17 25 25 Cl 1.73599 * 120.01484 * 0.02562 * 24 19 18 26 26 C 1.39486 * 120.33224 * 0.25927 * 12 11 10 27 27 C 1.36373 * 120.16690 * 359.47649 * 26 12 11 28 28 H 0.97000 * 120.00296 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.08494 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.91544 * 179.97438 * 11 10 9 31 31 H 0.96990 * 120.00352 * 215.29117 * 13 12 11 32 32 H 1.09000 * 109.47590 * 60.00174 * 16 14 13 33 33 H 1.09002 * 109.46954 * 299.99466 * 16 14 13 34 34 H 1.09003 * 109.47542 * 59.99909 * 18 17 16 35 35 H 1.08996 * 109.47355 * 299.99724 * 18 17 16 36 36 H 1.07999 * 119.99222 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.98397 * 180.22779 * 21 20 19 38 38 H 1.07998 * 119.99198 * 179.97438 * 22 21 20 39 39 H 1.08008 * 120.00108 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.91223 * 179.74793 * 26 12 11 41 41 H 1.08004 * 120.08303 * 180.25704 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5402 1.4403 0.7001 7 6 2.0081 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3056 -2.4322 0.0957 10 6 1.8649 -3.5180 0.7976 11 6 1.1803 -4.6943 0.8848 12 6 -0.0707 -4.8236 0.2817 13 7 -0.7633 -6.0279 0.3746 14 6 -0.6807 -6.7678 1.4981 15 8 0.0572 -6.4246 2.3973 16 6 -1.5053 -8.0215 1.6369 17 16 -1.1755 -8.7868 3.2482 18 6 -2.2412 -10.2546 3.2286 19 6 -2.0780 -11.0111 4.5217 20 6 -2.8915 -10.7196 5.6006 21 6 -2.7456 -11.4171 6.7850 22 6 -1.7823 -12.4030 6.8931 23 6 -0.9645 -12.6913 5.8171 24 6 -1.1103 -11.9935 4.6311 25 17 -0.0831 -12.3550 3.2791 26 6 -0.6287 -3.7545 -0.4191 27 6 0.0415 -2.5703 -0.5103 28 1 -0.4850 0.8400 -0.0004 29 1 2.8332 -3.4192 1.2654 30 1 1.6080 -5.5277 1.4222 31 1 -1.3051 -6.3344 -0.3692 32 1 -1.2420 -8.7194 0.8421 33 1 -2.5634 -7.7703 1.5642 34 1 -1.9596 -10.8970 2.3943 35 1 -3.2808 -9.9473 3.1158 36 1 -3.6444 -9.9499 5.5166 37 1 -3.3839 -11.1915 7.6264 38 1 -1.6685 -12.9474 7.8189 39 1 -0.2123 -13.4618 5.9016 40 1 -1.5960 -3.8634 -0.8870 41 1 -0.3938 -1.7420 -1.0498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015029855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:28 Heat of formation + Delta-G solvation = 5.126965 kcal Electronic energy + Delta-G solvation = -24826.431387 eV Core-core repulsion = 21015.939311 eV Total energy + Delta-G solvation = -3810.492076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.78126 -39.63244 -37.25712 -36.72412 -34.47114 -33.31906 -32.97623 -31.11532 -30.45830 -29.55632 -28.46743 -27.42194 -24.80706 -23.11273 -22.11381 -21.68139 -20.85693 -19.72777 -17.64987 -17.35389 -16.99121 -16.47400 -16.18248 -16.03305 -15.71358 -15.36024 -15.16911 -14.47165 -14.19990 -13.97027 -13.79227 -13.57801 -13.50735 -13.12242 -12.93012 -12.63033 -12.47045 -12.11425 -11.98033 -11.81388 -11.73159 -11.68662 -11.36418 -11.15902 -11.05040 -10.99097 -10.73041 -10.17432 -10.05779 -9.51801 -9.46594 -9.25860 -9.17429 -8.99075 -8.90528 -7.69053 -7.55722 -6.88245 -6.62485 -4.34990 0.52880 0.82516 1.57270 1.83252 2.40450 2.50625 2.98743 3.08066 3.10005 3.14032 3.28732 3.31043 3.66552 3.97941 4.15239 4.29437 4.55110 4.68806 4.73657 4.91083 4.92289 4.94298 5.02538 5.09575 5.14838 5.31916 5.49661 5.64710 5.79943 5.92561 6.01046 6.17426 6.37169 6.43995 6.72316 6.89310 7.05792 7.18816 7.28451 7.63025 7.71110 7.84270 8.05257 8.21848 8.30587 8.59952 8.69012 8.92164 8.98646 10.28548 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.001643 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.464614 B =17037.216890 C =17212.247660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.002 3.998 13 N -0.647 5.647 14 C 0.514 3.486 15 O -0.509 6.509 16 C -0.131 4.131 17 S -0.154 6.154 18 C -0.080 4.080 19 C -0.060 4.060 20 C -0.090 4.090 21 C -0.115 4.115 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.021 4.021 25 Cl -0.059 7.059 26 C -0.119 4.119 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.396 0.604 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -23.657 7.082 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.090 4.090 13 N -0.290 5.290 14 C 0.299 3.701 15 O -0.384 6.384 16 C -0.282 4.282 17 S 0.074 5.926 18 C -0.227 4.227 19 C -0.062 4.062 20 C -0.110 4.110 21 C -0.133 4.133 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.049 4.049 25 Cl -0.030 7.030 26 C -0.140 4.140 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.230 0.770 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.109 0.891 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.049 -22.887 8.365 25.663 hybrid contribution -0.846 0.181 -1.449 1.687 sum -8.895 -22.706 6.916 25.348 Atomic orbital electron populations 1.69754 1.07296 1.28726 1.38093 1.25885 0.94952 1.01197 0.92550 0.86189 0.80266 0.80451 0.79035 1.19525 1.20296 1.18700 1.19506 0.94760 0.90207 1.44588 0.90576 1.17740 0.92294 0.92022 0.88197 1.20812 1.01269 0.94919 1.05476 1.20410 0.92732 0.97916 0.99378 1.17244 0.94225 0.85670 1.11890 1.42859 1.48963 1.21370 1.15841 1.19552 0.83454 0.84284 0.82845 1.90742 1.38150 1.69930 1.39599 1.23556 1.04343 0.99710 1.00608 1.87881 1.58224 1.25413 1.21034 1.22497 1.03201 0.98854 0.98155 1.19048 0.96125 0.95664 0.95379 1.21067 0.98877 0.99129 0.91904 1.21258 0.98437 0.95873 0.97774 1.21168 0.95136 0.97773 0.98339 1.21064 1.00398 1.00101 0.91485 1.20845 0.94879 0.98765 0.90424 1.98385 1.66314 1.93839 1.44458 1.20305 0.98337 0.93112 1.02218 1.21192 0.97298 0.95527 1.02144 0.91131 0.88529 0.87419 0.77044 0.87528 0.87442 0.88643 0.88798 0.84711 0.85106 0.84980 0.84749 0.89077 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.15 10.59 55.55 0.59 -20.57 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.10 29.56 -169.99 -5.03 14.07 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.33 9.02 -37.85 -0.34 -12.67 16 8 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 10 C -0.20 -5.25 9.74 -39.26 -0.38 -5.63 16 11 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 12 C 0.00 0.04 6.31 -83.57 -0.53 -0.48 16 13 N -0.65 -11.12 5.30 -9.74 -0.05 -11.17 16 14 C 0.51 8.91 7.68 -10.98 -0.08 8.82 16 15 O -0.51 -11.19 13.28 5.56 0.07 -11.11 16 16 C -0.13 -1.56 6.43 36.00 0.23 -1.33 16 17 S -0.15 -2.05 20.86 -107.50 -2.24 -4.29 16 18 C -0.08 -0.74 5.67 36.01 0.20 -0.53 16 19 C -0.06 -0.57 5.14 -104.59 -0.54 -1.11 16 20 C -0.09 -0.73 9.70 -39.59 -0.38 -1.11 16 21 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 22 C -0.11 -0.70 10.05 -39.59 -0.40 -1.10 16 23 C -0.11 -0.89 9.83 -39.55 -0.39 -1.28 16 24 C -0.02 -0.20 6.31 -39.50 -0.25 -0.45 16 25 Cl -0.06 -0.59 27.30 -51.86 -1.42 -2.00 16 26 C -0.12 -2.71 9.90 -39.79 -0.39 -3.10 16 27 C -0.14 -3.64 8.62 -39.26 -0.34 -3.98 16 28 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 29 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.11 2.60 6.22 -52.49 -0.33 2.27 16 31 H 0.40 5.14 8.82 -40.82 -0.36 4.78 16 32 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.11 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.10 0.83 6.91 -51.92 -0.36 0.47 16 35 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.13 3.49 6.13 -52.48 -0.32 3.17 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -32.01 379.19 -12.09 -44.10 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.72 Total: 9.02 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -5.02 Total: -23.76 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.54 Total: -31.74 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.24 Total: -4.29 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.42 Total: -2.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.01 -12.09 -44.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015029855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.229 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds