Wall clock time and date at job start Tue Mar 31 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48496 * 109.46976 * 269.99539 * 3 2 1 5 5 H 1.48493 * 109.47124 * 29.99508 * 3 2 1 6 6 H 1.48501 * 109.47250 * 149.99750 * 3 2 1 7 7 C 1.39903 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99959 * 175.56143 * 7 2 1 9 9 C 1.41151 * 120.00315 * 355.55951 * 7 2 1 10 10 C 1.40866 * 120.16916 * 214.78129 * 9 7 2 11 11 C 1.36378 * 119.83077 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16737 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83532 * 179.97438 * 12 11 10 14 14 C 1.34784 * 119.99545 * 35.28960 * 13 12 11 15 15 O 1.21277 * 120.00028 * 355.70524 * 14 13 12 16 16 C 1.50697 * 119.99494 * 175.71179 * 14 13 12 17 17 S 1.81403 * 109.46921 * 180.02562 * 16 14 13 18 18 C 1.81396 * 103.00113 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47059 * 179.97438 * 18 17 16 20 20 C 1.38230 * 120.00945 * 89.99946 * 19 18 17 21 21 C 1.38224 * 120.01478 * 179.73996 * 20 19 18 22 22 C 1.38263 * 120.02687 * 0.25914 * 21 20 19 23 23 C 1.38190 * 120.00976 * 0.02562 * 22 21 20 24 24 C 1.38334 * 120.00701 * 270.26995 * 19 18 17 25 25 Cl 1.73599 * 120.01484 * 0.02562 * 24 19 18 26 26 C 1.39486 * 120.33224 * 0.25927 * 12 11 10 27 27 C 1.36373 * 120.16690 * 359.47649 * 26 12 11 28 28 H 0.97000 * 120.00296 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.08494 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.91544 * 179.97438 * 11 10 9 31 31 H 0.96990 * 120.00352 * 215.29117 * 13 12 11 32 32 H 1.09000 * 109.47590 * 60.00174 * 16 14 13 33 33 H 1.09002 * 109.46954 * 299.99466 * 16 14 13 34 34 H 1.09003 * 109.47542 * 59.99909 * 18 17 16 35 35 H 1.08996 * 109.47355 * 299.99724 * 18 17 16 36 36 H 1.07999 * 119.99222 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.98397 * 180.22779 * 21 20 19 38 38 H 1.07998 * 119.99198 * 179.97438 * 22 21 20 39 39 H 1.08008 * 120.00108 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.91223 * 179.74793 * 26 12 11 41 41 H 1.08004 * 120.08303 * 180.25704 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5402 1.4403 0.7001 7 6 2.0081 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3056 -2.4322 0.0957 10 6 1.8649 -3.5180 0.7976 11 6 1.1803 -4.6943 0.8848 12 6 -0.0707 -4.8236 0.2817 13 7 -0.7633 -6.0279 0.3746 14 6 -0.6807 -6.7678 1.4981 15 8 0.0572 -6.4246 2.3973 16 6 -1.5053 -8.0215 1.6369 17 16 -1.1755 -8.7868 3.2482 18 6 -2.2412 -10.2546 3.2286 19 6 -2.0780 -11.0111 4.5217 20 6 -2.8915 -10.7196 5.6006 21 6 -2.7456 -11.4171 6.7850 22 6 -1.7823 -12.4030 6.8931 23 6 -0.9645 -12.6913 5.8171 24 6 -1.1103 -11.9935 4.6311 25 17 -0.0831 -12.3550 3.2791 26 6 -0.6287 -3.7545 -0.4191 27 6 0.0415 -2.5703 -0.5103 28 1 -0.4850 0.8400 -0.0004 29 1 2.8332 -3.4192 1.2654 30 1 1.6080 -5.5277 1.4222 31 1 -1.3051 -6.3344 -0.3692 32 1 -1.2420 -8.7194 0.8421 33 1 -2.5634 -7.7703 1.5642 34 1 -1.9596 -10.8970 2.3943 35 1 -3.2808 -9.9473 3.1158 36 1 -3.6444 -9.9499 5.5166 37 1 -3.3839 -11.1915 7.6264 38 1 -1.6685 -12.9474 7.8189 39 1 -0.2123 -13.4618 5.9016 40 1 -1.5960 -3.8634 -0.8870 41 1 -0.3938 -1.7420 -1.0498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015029855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:27 Heat of formation + Delta-G solvation = -11.056577 kcal Electronic energy + Delta-G solvation = -24827.133158 eV Core-core repulsion = 21015.939311 eV Total energy + Delta-G solvation = -3811.193847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.20870 -40.33118 -39.06683 -37.40541 -36.19461 -34.76565 -33.91956 -31.85924 -31.68040 -31.44016 -30.10668 -28.09932 -26.63176 -23.68867 -23.53669 -22.82491 -22.50586 -21.30251 -19.29605 -18.69223 -18.04255 -17.89176 -17.14899 -16.96406 -16.86369 -16.54202 -16.31206 -15.73467 -15.28783 -15.20196 -14.96428 -14.78371 -14.49565 -14.25511 -14.17817 -14.00162 -13.74330 -13.54335 -13.45533 -13.20614 -12.85048 -12.77004 -12.60461 -12.49405 -12.44346 -12.27020 -11.81664 -11.72169 -11.41420 -11.23418 -11.02812 -10.88135 -10.64263 -9.85543 -9.62020 -9.48531 -8.77819 -8.65145 -8.51644 -6.34510 -0.16770 0.24508 0.72955 0.79966 1.12095 1.16724 1.39013 1.42936 1.52751 1.57658 1.72564 2.23123 2.31475 2.72761 2.79157 3.52315 3.64167 3.71329 3.77360 4.03752 4.08123 4.22228 4.24777 4.38469 4.38566 4.44073 4.51577 4.51921 4.73899 4.91857 4.95286 5.11741 5.13019 5.24782 5.31862 5.36661 5.41437 5.46531 5.68038 5.84758 5.88447 5.99928 6.11854 6.37629 6.63017 6.67653 6.95388 6.98023 7.32359 8.41031 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.001643 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.464614 B =17037.216890 C =17212.247660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.067 3.933 10 C -0.222 4.222 11 C -0.098 4.098 12 C 0.021 3.979 13 N -0.638 5.638 14 C 0.511 3.489 15 O -0.559 6.559 16 C -0.109 4.109 17 S -0.230 6.230 18 C -0.056 4.056 19 C -0.080 4.080 20 C -0.098 4.098 21 C -0.117 4.117 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.038 4.038 25 Cl -0.072 7.072 26 C -0.116 4.116 27 C -0.159 4.159 28 H 0.285 0.715 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.421 0.579 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.128 0.872 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 -24.999 7.356 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.065 3.935 10 C -0.242 4.242 11 C -0.118 4.118 12 C -0.073 4.073 13 N -0.284 5.284 14 C 0.299 3.701 15 O -0.437 6.437 16 C -0.260 4.260 17 S -0.001 6.001 18 C -0.203 4.203 19 C -0.083 4.083 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.066 4.066 25 Cl -0.043 7.043 26 C -0.136 4.136 27 C -0.179 4.179 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.259 0.741 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.165 0.835 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.196 -24.273 8.604 27.698 hybrid contribution -0.279 0.366 -1.422 1.495 sum -10.474 -23.907 7.181 27.071 Atomic orbital electron populations 1.69811 1.08529 1.30004 1.38433 1.26735 0.95847 1.04284 0.91570 0.85105 0.78643 0.75809 0.79521 1.18293 1.19329 1.18818 1.19720 0.94822 0.91368 1.46927 0.91028 1.18052 0.93477 0.92638 0.89378 1.20919 1.01608 0.95603 1.06066 1.20508 0.93888 0.97363 1.00013 1.17282 0.93351 0.87333 1.09312 1.42754 1.48681 1.19767 1.17187 1.20448 0.82801 0.85237 0.81663 1.90734 1.40292 1.71395 1.41286 1.23427 1.04939 0.97117 1.00479 1.88192 1.60665 1.28491 1.22791 1.22451 1.03046 0.96349 0.98443 1.19204 0.96894 0.96122 0.96044 1.21335 0.98952 0.99496 0.91996 1.21624 0.98518 0.95302 0.98089 1.21542 0.94241 0.97494 0.98867 1.21334 1.01038 1.00354 0.91399 1.21065 0.95182 0.99697 0.90701 1.98373 1.66771 1.93944 1.45195 1.20573 0.99385 0.91972 1.01683 1.21189 0.97389 0.96538 1.02753 0.90415 0.88847 0.87719 0.74127 0.84278 0.83943 0.88151 0.86554 0.83519 0.82661 0.82317 0.83648 0.85376 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.57 10.59 21.82 0.23 -44.34 16 2 C 0.03 1.43 5.42 85.24 0.46 1.89 16 3 Si 0.99 39.58 29.56 68.60 2.03 41.61 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.50 -27.77 9.02 23.39 0.21 -27.56 16 8 H 0.07 3.88 7.85 -2.91 -0.02 3.85 16 9 C 0.07 3.75 5.55 -21.28 -0.12 3.63 16 10 C -0.22 -11.87 9.74 22.48 0.22 -11.66 16 11 C -0.10 -4.83 8.61 22.14 0.19 -4.64 16 12 C 0.02 0.91 6.31 38.57 0.24 1.15 16 13 N -0.64 -20.45 5.30 -303.11 -1.61 -22.05 16 14 C 0.51 16.83 7.68 87.65 0.67 17.50 16 15 O -0.56 -24.60 13.28 -3.02 -0.04 -24.64 16 16 C -0.11 -2.27 6.43 71.23 0.46 -1.82 16 17 S -0.23 -5.83 20.86 -56.49 -1.18 -7.01 16 18 C -0.06 -0.92 5.67 71.24 0.40 -0.51 16 19 C -0.08 -1.40 5.14 -19.84 -0.10 -1.50 16 20 C -0.10 -1.39 9.70 22.26 0.22 -1.18 16 21 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16 22 C -0.10 -1.13 10.05 22.26 0.22 -0.91 16 23 C -0.12 -1.78 9.83 22.29 0.22 -1.56 16 24 C -0.04 -0.69 6.31 22.32 0.14 -0.55 16 25 Cl -0.07 -1.39 27.30 -2.72 -0.07 -1.46 16 26 C -0.12 -5.15 9.90 22.14 0.22 -4.94 16 27 C -0.16 -8.30 8.62 22.48 0.19 -8.11 16 28 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 29 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 30 H 0.10 5.21 6.22 -2.91 -0.02 5.19 16 31 H 0.42 9.35 8.82 -92.72 -0.82 8.54 16 32 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.10 1.53 6.91 -2.39 -0.02 1.51 16 35 H 0.12 1.35 8.09 -2.39 -0.02 1.33 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.12 6.52 6.13 -2.91 -0.02 6.51 16 Total: -1.00 -73.58 379.19 3.70 -69.89 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.26 Total: 29.86 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 4.08 Total: -41.85 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -1.38 Total: -66.40 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.04 Total: -24.64 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.18 Total: -7.01 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.07 Total: -1.46 kcal Total: -73.58 3.70 -69.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015029855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.829 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds