Wall clock time and date at job start Tue Mar 31 2020 05:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 S 1.81002 * 109.47176 * 119.99947 * 2 1 3 5 5 C 1.76197 * 99.99683 * 294.99843 * 4 2 1 6 6 N 1.31048 * 125.08351 * 359.69400 * 5 4 2 7 7 C 1.35880 * 109.62551 * 179.82783 * 6 5 4 8 8 C 1.39722 * 133.37678 * 180.12642 * 7 6 5 9 9 C 1.37691 * 119.77678 * 180.35525 * 8 7 6 10 10 C 1.38695 * 120.49711 * 359.97438 * 9 8 7 11 11 C 1.37984 * 120.43262 * 359.97438 * 10 9 8 12 12 C 1.38652 * 119.85389 * 0.02562 * 11 10 9 13 13 N 1.36641 * 125.07686 * 180.02562 * 5 4 2 14 14 C 1.46498 * 126.38272 * 0.03460 * 13 5 4 15 15 C 1.50697 * 109.47388 * 89.97565 * 14 13 5 16 16 H 1.07999 * 119.99771 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00427 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99588 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47346 * 90.00530 * 19 17 15 21 21 H 1.48507 * 109.46782 * 210.00307 * 19 17 15 22 22 H 1.48496 * 109.47302 * 329.99751 * 19 17 15 23 23 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 24 24 O 1.21282 * 119.99824 * 265.00211 * 23 2 1 25 25 N 1.34774 * 120.00271 * 84.99866 * 23 2 1 26 26 C 1.47020 * 125.64681 * 359.69266 * 25 23 2 27 27 C 1.54315 * 107.27795 * 180.96725 * 26 25 23 28 28 C 1.55157 * 102.85926 * 22.52757 * 27 26 25 29 29 C 1.47418 * 125.64747 * 180.02562 * 25 23 2 30 30 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 32 32 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.10991 * 0.37201 * 8 7 6 34 34 H 1.07999 * 119.75246 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.78837 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.07144 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47044 * 209.98011 * 14 13 5 38 38 H 1.09001 * 109.46917 * 329.97220 * 14 13 5 39 39 H 0.96993 * 120.00133 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.88551 * 300.51372 * 26 25 23 41 41 H 1.09006 * 109.88223 * 61.67883 * 26 25 23 42 42 H 1.09007 * 110.92454 * 264.11672 * 27 26 25 43 43 H 1.08994 * 110.59489 * 140.78631 * 27 26 25 44 44 H 1.09001 * 111.00320 * 206.23282 * 28 27 26 45 45 H 1.08991 * 111.00656 * 82.37949 * 28 27 26 46 46 H 1.09003 * 110.36969 * 274.67058 * 29 25 23 47 47 H 1.08997 * 110.37281 * 36.88747 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8532 1.4779 5 6 1.5439 0.2423 2.7256 6 7 0.8707 1.3445 2.5035 7 6 0.5716 1.9428 3.6863 8 6 -0.1158 3.1115 4.0237 9 6 -0.2523 3.4667 5.3470 10 6 0.2871 2.6727 6.3481 11 6 0.9678 1.5150 6.0315 12 6 1.1149 1.1419 4.7042 13 7 1.7261 0.0730 4.0692 14 6 2.4351 -1.0330 4.7174 15 6 3.8917 -0.6769 4.8674 16 1 4.2531 0.2781 4.5154 17 6 4.7627 -1.5697 5.4548 18 7 4.3226 -2.7323 5.8839 19 14 6.5682 -1.1278 5.6413 20 1 6.7792 -0.4470 6.9441 21 1 7.3883 -2.3648 5.5906 22 1 6.9723 -0.2205 4.5374 23 6 2.0323 -0.7104 -1.2305 24 8 2.3207 -1.8872 -1.1760 25 7 2.1610 -0.0381 -2.3915 26 6 1.8429 1.3822 -2.5990 27 6 2.1222 1.7025 -4.0824 28 6 2.0341 0.3090 -4.7591 29 6 2.6376 -0.6068 -3.6653 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.5389 3.7340 3.2491 34 1 -0.7840 4.3700 5.6073 35 1 0.1729 2.9620 7.3823 36 1 1.3858 0.9013 6.8157 37 1 2.0024 -1.2151 5.7012 38 1 2.3417 -1.9316 4.1076 39 1 4.9355 -3.3605 6.2968 40 1 0.7929 1.5642 -2.3698 41 1 2.4759 2.0007 -1.9627 42 1 3.1171 2.1299 -4.2078 43 1 1.3603 2.3730 -4.4799 44 1 2.6333 0.2780 -5.6691 45 1 0.9984 0.0398 -4.9658 46 1 3.7265 -0.5817 -3.7083 47 1 2.2776 -1.6289 -3.7829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015981199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:04 Heat of formation + Delta-G solvation = 37.438761 kcal Electronic energy + Delta-G solvation = -29406.202695 eV Core-core repulsion = 25487.673017 eV Total energy + Delta-G solvation = -3918.529677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.30627 -40.22072 -37.55917 -36.73486 -34.27608 -33.37177 -32.31899 -31.44482 -29.86090 -29.29150 -28.81845 -27.21138 -25.18333 -23.41463 -23.28258 -22.97177 -21.57862 -21.45925 -20.10498 -19.46366 -17.57122 -17.07945 -16.85992 -16.63617 -16.46149 -15.98852 -15.44860 -14.86187 -14.68628 -14.55108 -14.48984 -13.95298 -13.70071 -13.50273 -13.45725 -13.33852 -13.25507 -12.89052 -12.54485 -12.23528 -12.08730 -11.94307 -11.83271 -11.67440 -11.55906 -11.54257 -11.46392 -11.22512 -11.10402 -10.91387 -10.87000 -10.33365 -10.21140 -9.98633 -9.89546 -9.46182 -9.33537 -8.86566 -8.69179 -8.57573 -7.52326 -6.98343 -6.30435 -4.39427 1.36795 1.40653 2.05622 2.26045 2.55601 2.85866 3.18728 3.19878 3.26612 3.31897 3.67267 4.07888 4.22892 4.26639 4.35751 4.53500 4.56522 4.90229 4.92320 4.93717 5.02243 5.04041 5.14257 5.31755 5.35817 5.37039 5.44475 5.48652 5.52830 5.59659 5.66848 5.77313 5.78988 5.86394 5.88538 5.94675 6.06450 6.11431 6.30271 6.39866 6.75264 6.87438 6.93120 7.03744 7.23728 7.24947 7.35821 7.57800 7.77722 7.79054 7.97937 8.27410 8.65556 9.28226 10.77262 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008421 B = 0.003504 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.302813 B = 7988.962134 C =10376.060293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 H 0.119 0.881 4 S 0.086 5.914 5 C 0.252 3.748 6 N -0.519 5.519 7 C 0.051 3.949 8 C -0.079 4.079 9 C -0.134 4.134 10 C -0.123 4.123 11 C -0.090 4.090 12 C 0.060 3.940 13 N -0.438 5.438 14 C 0.236 3.764 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.070 3.930 18 N -0.887 5.887 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.554 3.446 24 O -0.520 6.520 25 N -0.616 5.616 26 C 0.095 3.905 27 C -0.131 4.131 28 C -0.134 4.134 29 C 0.105 3.895 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.269 0.731 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 10.048 -15.589 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.247 4.247 3 H 0.137 0.863 4 S 0.317 5.683 5 C -0.122 4.122 6 N -0.246 5.246 7 C -0.071 4.071 8 C -0.100 4.100 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.111 4.111 12 C -0.053 4.053 13 N -0.124 5.124 14 C 0.118 3.882 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.195 1.195 23 C 0.340 3.660 24 O -0.396 6.396 25 N -0.352 5.352 26 C -0.028 4.028 27 C -0.169 4.169 28 C -0.172 4.172 29 C -0.017 4.017 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.301 8.273 -16.032 19.462 hybrid contribution 0.668 1.089 0.989 1.616 sum -6.633 9.362 -15.042 18.918 Atomic orbital electron populations 1.22021 0.89929 1.03499 1.04464 1.23418 1.02213 1.04407 0.94616 0.86334 1.86605 1.67361 1.24166 0.90159 1.25373 1.00522 0.98184 0.88104 1.70808 1.20924 1.06957 1.25886 1.19053 1.02383 0.96979 0.88726 1.20045 0.99508 0.94410 0.96018 1.20716 1.02357 1.00226 0.92189 1.20737 0.99818 0.94769 0.98991 1.20067 1.00485 0.97704 0.92883 1.18991 1.00348 0.90864 0.95104 1.45980 1.41740 1.20727 1.03989 1.19857 0.92081 0.82216 0.94075 1.21217 0.91641 1.03549 1.41528 0.91706 1.24903 0.99569 0.94484 0.94462 1.69910 1.36098 1.07420 1.39009 0.86370 0.83514 0.78191 0.78794 1.20294 1.20702 1.19506 1.19467 0.77342 0.86456 0.82701 1.90764 1.49401 1.15318 1.84078 1.48344 1.66154 1.11312 1.09425 1.22148 1.01387 0.81815 0.97463 1.22639 1.03051 0.97529 0.93699 1.22795 1.02030 0.94623 0.97718 1.22247 0.99112 0.98430 0.81932 0.88489 0.92050 0.91510 0.86272 0.86192 0.85996 0.85843 0.93146 0.92733 0.92116 0.90827 0.90902 0.90311 0.89812 0.89683 0.90492 0.91216 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.99 37.16 0.33 -1.57 16 2 C -0.11 -1.75 2.15 -27.88 -0.06 -1.81 16 3 H 0.12 1.72 7.30 -51.92 -0.38 1.34 16 4 S 0.09 1.69 20.30 -107.50 -2.18 -0.49 16 5 C 0.25 5.37 7.64 -88.44 -0.68 4.70 16 6 N -0.52 -10.36 8.65 -10.90 -0.09 -10.46 16 7 C 0.05 1.01 7.22 -84.68 -0.61 0.40 16 8 C -0.08 -1.29 10.10 -39.23 -0.40 -1.68 16 9 C -0.13 -1.93 10.01 -39.61 -0.40 -2.32 16 10 C -0.12 -1.88 10.03 -39.51 -0.40 -2.27 16 11 C -0.09 -1.70 10.04 -39.52 -0.40 -2.10 16 12 C 0.06 1.29 6.87 -83.84 -0.58 0.71 16 13 N -0.44 -10.12 2.82 -115.61 -0.33 -10.44 16 14 C 0.24 5.98 5.69 -5.20 -0.03 5.95 16 15 C -0.54 -14.76 9.39 -34.44 -0.32 -15.09 16 16 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 18 N -0.89 -24.94 13.29 55.43 0.74 -24.21 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 23 C 0.55 8.46 6.97 -10.98 -0.08 8.39 16 24 O -0.52 -9.81 16.39 5.56 0.09 -9.72 16 25 N -0.62 -7.13 3.33 -170.54 -0.57 -7.70 16 26 C 0.09 0.79 6.19 -3.07 -0.02 0.77 16 27 C -0.13 -0.75 6.95 -24.90 -0.17 -0.92 16 28 C -0.13 -0.80 7.08 -24.59 -0.17 -0.98 16 29 C 0.11 0.99 6.91 -2.54 -0.02 0.97 16 30 H 0.10 1.48 5.87 -51.93 -0.30 1.18 16 31 H 0.06 0.67 7.21 -51.93 -0.37 0.29 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 1.45 7.68 -51.93 -0.40 1.05 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.07 0.56 7.21 -51.93 -0.37 0.18 16 41 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 42 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.82 8.03 -51.93 -0.42 0.41 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -32.11 399.84 -12.28 -44.39 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.85 Total: 1.46 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -4.09 Total: -5.04 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.25 Total: -52.80 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.18 Total: -0.49 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.11 -12.28 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015981199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.826 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds