Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 S 1.81002 * 109.47176 * 119.99947 * 2 1 3 5 5 C 1.76197 * 99.99683 * 294.99843 * 4 2 1 6 6 N 1.31048 * 125.08351 * 359.69400 * 5 4 2 7 7 C 1.35880 * 109.62551 * 179.82783 * 6 5 4 8 8 C 1.39722 * 133.37678 * 180.12642 * 7 6 5 9 9 C 1.37691 * 119.77678 * 180.35525 * 8 7 6 10 10 C 1.38695 * 120.49711 * 359.97438 * 9 8 7 11 11 C 1.37984 * 120.43262 * 359.97438 * 10 9 8 12 12 C 1.38652 * 119.85389 * 0.02562 * 11 10 9 13 13 N 1.36641 * 125.07686 * 180.02562 * 5 4 2 14 14 C 1.46498 * 126.38272 * 0.03460 * 13 5 4 15 15 C 1.50697 * 109.47388 * 89.97565 * 14 13 5 16 16 H 1.07999 * 119.99771 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00427 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99588 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47346 * 90.00530 * 19 17 15 21 21 H 1.48507 * 109.46782 * 210.00307 * 19 17 15 22 22 H 1.48496 * 109.47302 * 329.99751 * 19 17 15 23 23 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 24 24 O 1.21282 * 119.99824 * 265.00211 * 23 2 1 25 25 N 1.34774 * 120.00271 * 84.99866 * 23 2 1 26 26 C 1.47020 * 125.64681 * 359.69266 * 25 23 2 27 27 C 1.54315 * 107.27795 * 180.96725 * 26 25 23 28 28 C 1.55157 * 102.85926 * 22.52757 * 27 26 25 29 29 C 1.47418 * 125.64747 * 180.02562 * 25 23 2 30 30 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 32 32 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.10991 * 0.37201 * 8 7 6 34 34 H 1.07999 * 119.75246 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.78837 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.07144 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47044 * 209.98011 * 14 13 5 38 38 H 1.09001 * 109.46917 * 329.97220 * 14 13 5 39 39 H 0.96993 * 120.00133 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.88551 * 300.51372 * 26 25 23 41 41 H 1.09006 * 109.88223 * 61.67883 * 26 25 23 42 42 H 1.09007 * 110.92454 * 264.11672 * 27 26 25 43 43 H 1.08994 * 110.59489 * 140.78631 * 27 26 25 44 44 H 1.09001 * 111.00320 * 206.23282 * 28 27 26 45 45 H 1.08991 * 111.00656 * 82.37949 * 28 27 26 46 46 H 1.09003 * 110.36969 * 274.67058 * 29 25 23 47 47 H 1.08997 * 110.37281 * 36.88747 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8532 1.4779 5 6 1.5439 0.2423 2.7256 6 7 0.8707 1.3445 2.5035 7 6 0.5716 1.9428 3.6863 8 6 -0.1158 3.1115 4.0237 9 6 -0.2523 3.4667 5.3470 10 6 0.2871 2.6727 6.3481 11 6 0.9678 1.5150 6.0315 12 6 1.1149 1.1419 4.7042 13 7 1.7261 0.0730 4.0692 14 6 2.4351 -1.0330 4.7174 15 6 3.8917 -0.6769 4.8674 16 1 4.2531 0.2781 4.5154 17 6 4.7627 -1.5697 5.4548 18 7 4.3226 -2.7323 5.8839 19 14 6.5682 -1.1278 5.6413 20 1 6.7792 -0.4470 6.9441 21 1 7.3883 -2.3648 5.5906 22 1 6.9723 -0.2205 4.5374 23 6 2.0323 -0.7104 -1.2305 24 8 2.3207 -1.8872 -1.1760 25 7 2.1610 -0.0381 -2.3915 26 6 1.8429 1.3822 -2.5990 27 6 2.1222 1.7025 -4.0824 28 6 2.0341 0.3090 -4.7591 29 6 2.6376 -0.6068 -3.6653 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.5389 3.7340 3.2491 34 1 -0.7840 4.3700 5.6073 35 1 0.1729 2.9620 7.3823 36 1 1.3858 0.9013 6.8157 37 1 2.0024 -1.2151 5.7012 38 1 2.3417 -1.9316 4.1076 39 1 4.9355 -3.3605 6.2968 40 1 0.7929 1.5642 -2.3698 41 1 2.4759 2.0007 -1.9627 42 1 3.1171 2.1299 -4.2078 43 1 1.3603 2.3730 -4.4799 44 1 2.6333 0.2780 -5.6691 45 1 0.9984 0.0398 -4.9658 46 1 3.7265 -0.5817 -3.7083 47 1 2.2776 -1.6289 -3.7829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015981199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = 20.522800 kcal Electronic energy + Delta-G solvation = -29406.936226 eV Core-core repulsion = 25487.673017 eV Total energy + Delta-G solvation = -3919.263209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.83541 -41.25331 -38.49110 -38.11379 -36.07900 -34.71032 -34.09363 -32.28804 -31.33547 -30.28681 -29.90831 -29.11827 -26.24151 -25.37910 -24.59560 -24.02916 -22.94362 -22.09394 -21.61649 -20.51428 -18.97579 -18.77123 -18.31282 -18.06617 -17.51395 -17.36633 -16.62064 -16.54135 -16.27960 -16.00179 -15.55417 -15.04457 -14.92405 -14.87363 -14.51825 -14.42947 -14.27891 -14.20928 -13.86171 -13.82405 -13.36284 -13.27193 -13.16733 -13.05007 -12.87476 -12.74784 -12.69553 -12.48326 -12.20531 -12.17325 -12.14189 -12.03801 -11.59258 -11.38575 -11.16500 -11.08498 -10.99083 -10.77997 -10.04643 -9.80053 -9.02749 -8.50165 -8.39088 -6.57961 -0.07435 -0.01038 0.68516 0.85872 1.31791 1.33556 1.37384 1.44551 1.66119 1.84353 2.00997 2.30163 2.90750 2.98045 3.19481 3.45833 3.65042 3.70071 3.79039 3.92204 4.06005 4.07246 4.21255 4.24453 4.27431 4.44557 4.46078 4.56036 4.57023 4.66227 4.69966 4.76098 4.82139 4.84881 4.93445 4.93537 4.98621 5.11433 5.14558 5.22483 5.32831 5.37148 5.45271 5.60871 5.62992 5.70472 5.72134 5.99274 6.05369 6.23952 6.50655 6.72238 6.84863 7.13557 8.67261 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008421 B = 0.003504 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.302813 B = 7988.962134 C =10376.060293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 H 0.128 0.872 4 S 0.025 5.975 5 C 0.238 3.762 6 N -0.504 5.504 7 C 0.026 3.974 8 C -0.077 4.077 9 C -0.118 4.118 10 C -0.100 4.100 11 C -0.125 4.125 12 C 0.026 3.974 13 N -0.459 5.459 14 C 0.257 3.743 15 C -0.552 4.552 16 H 0.049 0.951 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.272 1.272 23 C 0.549 3.451 24 O -0.568 6.568 25 N -0.610 5.610 26 C 0.082 3.918 27 C -0.122 4.122 28 C -0.121 4.121 29 C 0.094 3.906 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.149 0.851 34 H 0.171 0.829 35 H 0.160 0.840 36 H 0.109 0.891 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.274 0.726 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 13.986 -16.764 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.224 4.224 3 H 0.146 0.854 4 S 0.256 5.744 5 C -0.135 4.135 6 N -0.231 5.231 7 C -0.096 4.096 8 C -0.097 4.097 9 C -0.138 4.138 10 C -0.120 4.120 11 C -0.146 4.146 12 C -0.086 4.086 13 N -0.147 5.147 14 C 0.137 3.863 15 C -0.590 4.590 16 H 0.068 0.932 17 C -0.176 4.176 18 N -0.553 5.553 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.197 1.197 23 C 0.335 3.665 24 O -0.448 6.448 25 N -0.344 5.344 26 C -0.040 4.040 27 C -0.159 4.159 28 C -0.159 4.159 29 C -0.028 4.028 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.188 0.812 35 H 0.178 0.822 36 H 0.127 0.873 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.306 12.280 -17.239 22.738 hybrid contribution 0.851 0.022 1.347 1.593 sum -7.455 12.302 -15.893 21.436 Atomic orbital electron populations 1.21932 0.88506 1.03258 1.05298 1.23396 1.03172 1.03749 0.92085 0.85448 1.86728 1.68513 1.26009 0.93136 1.25455 1.01524 0.98917 0.87606 1.70787 1.20069 1.06201 1.26015 1.19601 1.03622 0.98327 0.88017 1.20533 0.98224 0.93045 0.97930 1.21291 1.00652 1.01021 0.90840 1.21251 0.96762 0.92575 1.01400 1.20266 1.02909 0.99703 0.91704 1.19532 1.01397 0.91000 0.96679 1.45821 1.42977 1.21059 1.04875 1.19289 0.91565 0.82675 0.92725 1.21307 0.92850 1.03061 1.41823 0.93246 1.25730 1.03800 0.94251 0.93857 1.70001 1.37679 1.08231 1.39432 0.85402 0.78285 0.78213 0.78975 1.19015 1.19668 1.19666 1.19435 0.77414 0.85985 0.83620 1.90737 1.51850 1.17273 1.84914 1.48468 1.64304 1.12780 1.08844 1.22499 1.02177 0.79548 0.99735 1.22666 1.04379 0.97584 0.91319 1.22785 1.02433 0.93617 0.97069 1.22502 0.99428 0.98734 0.82141 0.89962 0.88518 0.92367 0.83294 0.81180 0.82232 0.87271 0.95051 0.94997 0.91669 0.89563 0.90932 0.89552 0.87390 0.87470 0.89934 0.91175 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.99 71.98 0.65 -2.92 16 2 C -0.09 -2.89 2.15 29.85 0.06 -2.82 16 3 H 0.13 3.73 7.30 -2.39 -0.02 3.71 16 4 S 0.02 1.06 20.30 -56.49 -1.15 -0.08 16 5 C 0.24 10.75 7.64 179.59 1.37 12.12 16 6 N -0.50 -20.48 8.65 -188.40 -1.63 -22.11 16 7 C 0.03 1.02 7.22 39.42 0.28 1.31 16 8 C -0.08 -2.26 10.10 22.50 0.23 -2.03 16 9 C -0.12 -2.84 10.01 22.25 0.22 -2.61 16 10 C -0.10 -2.76 10.03 22.32 0.22 -2.54 16 11 C -0.12 -4.75 10.04 22.31 0.22 -4.52 16 12 C 0.03 1.13 6.87 38.72 0.27 1.40 16 13 N -0.46 -22.64 2.82 -519.68 -1.46 -24.10 16 14 C 0.26 14.11 5.69 85.63 0.49 14.60 16 15 C -0.55 -31.86 9.39 25.60 0.24 -31.62 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.03 1.42 5.46 84.65 0.46 1.88 16 18 N -0.92 -53.49 13.29 21.45 0.28 -53.20 16 19 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.55 17.30 6.97 87.66 0.61 17.91 16 24 O -0.57 -22.77 16.39 -3.04 -0.05 -22.82 16 25 N -0.61 -13.77 3.33 -811.86 -2.70 -16.47 16 26 C 0.08 1.18 6.19 86.73 0.54 1.72 16 27 C -0.12 -0.97 6.95 31.78 0.22 -0.75 16 28 C -0.12 -1.11 7.08 31.98 0.23 -0.89 16 29 C 0.09 1.70 6.91 86.85 0.60 2.30 16 30 H 0.08 2.52 5.87 -2.39 -0.01 2.51 16 31 H 0.10 1.91 7.21 -2.39 -0.02 1.90 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.03 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.03 1.86 7.68 -2.39 -0.02 1.85 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.09 1.05 7.21 -2.39 -0.02 1.03 16 41 H 0.07 1.08 7.88 -2.38 -0.02 1.06 16 42 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.38 8.03 -2.39 -0.02 1.36 16 Total: -1.00 -76.15 399.84 3.21 -72.94 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.98 Total: 16.88 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 6.92 Total: 2.53 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -5.51 Total: -115.89 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -1.15 Total: -0.08 kcal Total: -76.15 3.21 -72.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015981199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.460 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds